==============================================================================
 Castro Job Information
==============================================================================
job name: Castro

inputs file: inputs-collision.testsuite

number of MPI processes: 4
number of threads:       4

hydro tile size:         (1024)

CPU time used since start of simulation (CPU-hours): 0.0649791

==============================================================================
 Plotfile Information
==============================================================================
output date / time: Thu Dec 17 01:05:51 2020
output dir:         /raid/testing/castro-gfortran/Castro-SBU-tests/2020-12-17/Detonation-collision-retry-SDC
I/O time (s):       0.00336051


==============================================================================
 Build Information
==============================================================================
build date:    2020-12-17 01:05:18.975522
build machine: Linux groot.astro.sunysb.edu 5.7.11-100.fc31.x86_64 #1 SMP Wed Jul 29 18:17:53 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
build dir:     /raid/testing/castro-gfortran/Castro/Exec/science/Detonation
AMReX dir:     /raid/testing/castro-gfortran/amrex/

COMP:          gnu
COMP version:  9.3.1

C++ compiler:  mpicxx
C++ flags:      -Werror=return-type -g -O3 -std=c++14  -fopenmp -pthread   -DAMREX_TINY_PROFILING -DAMREX_TESTING -DBL_USE_MPI -DAMREX_USE_MPI -DBL_USE_OMP -DAMREX_USE_OMP -DGPU_COMPATIBLE_PROBLEM -DAMREX_GIT_VERSION="20.12-20-g88236accbcc2-dirty" -DAMREX_LAUNCH= -DAMREX_DEVICE= -DAMREX_CUDA_FORT_GLOBAL= -DAMREX_CUDA_FORT_DEVICE= -DAMREX_CUDA_FORT_HOST= -DAMREX_CUDA_FORT_HOST_DEVICE= -DBL_SPACEDIM=1 -DAMREX_SPACEDIM=1 -DBL_FORT_USE_UNDERSCORE -DAMREX_FORT_USE_UNDERSCORE -DBL_Linux -DAMREX_Linux -DAMREX_DIMENSION_AGNOSTIC -DNDEBUG -DCRSEGRNDOMP -DSPONGE -DREACTIONS -DEXTRA_THERMO -DCXX_REACTIONS -DSIMPLIFIED_SDC -DPRIM_SPECIES_HAVE_SOURCES -DSDC_EVOLVE_ENERGY -DMICROPHYSICS_FORT_EOS -DCXX_REACTIONS -DNETWORK_HAS_CXX_IMPLEMENTATION -DNAUX_NET=0 -DINTEGRATOR=0 -DINTEGRATOR_HAS_FORTRAN_IMPLEMENTATION -DVODE -DNUMSCREEN=33 -Itmp_build_dir/s/1d.gnu.TEST.TPROF.MPI.OMP.SMPLSDC.EXE -I. -I/raid/testing/castro-gfortran/amrex//Src/Base -I/raid/testing/castro-gfortran/amrex//Src/AmrCore -I/raid/testing/castro-gfortran/amrex//Src/Amr -I/raid/testing/castro-gfortran/amrex//Src/Boundary -I/raid/testing/castro-gfortran/Microphysics//util -I/raid/testing/castro-gfortran/Microphysics//integration/VODE -I/raid/testing/castro-gfortran/Microphysics//integration/VODE/cuVODE/source/ -I/raid/testing/castro-gfortran/Microphysics//integration/utils -I/raid/testing/castro-gfortran/Microphysics//integration -I/raid/testing/castro-gfortran/Microphysics//rates -I/raid/testing/castro-gfortran/Microphysics//screening -I/raid/testing/castro-gfortran/Microphysics//neutrinos -I. -I/raid/testing/castro-gfortran/Castro//Source/driver -I/raid/testing/castro-gfortran/Castro//Source/hydro -I/raid/testing/castro-gfortran/Castro//Source/problems -I/raid/testing/castro-gfortran/Castro//Source/sources -I/raid/testing/castro-gfortran/Castro//Util/model_parser -I/raid/testing/castro-gfortran/Castro//Source/hydro -I/raid/testing/castro-gfortran/Castro//Source/reactions -I/raid/testing/castro-gfortran/Microphysics//EOS -I/raid/testing/castro-gfortran/Microphysics//EOS/helmholtz -I/raid/testing/castro-gfortran/Microphysics//networks/aprox19 -I/raid/testing/castro-gfortran/Microphysics//EOS -I/raid/testing/castro-gfortran/Microphysics//networks -I/raid/testing/castro-gfortran/Microphysics//interfaces -I/raid/testing/castro-gfortran/Microphysics//constants -Itmp_build_dir/castro_sources/1d.gnu.TEST.TPROF.MPI.OMP.SMPLSDC.EXE -I/raid/testing/castro-gfortran/amrex//Tools/C_scripts

Fortran comp:  mpif90
Fortran flags:  -g -O3 -ffree-line-length-none -fno-range-check -fno-second-underscore -fimplicit-none  -fopenmp 

Link flags:    -L. -L/usr/lib/gcc/x86_64-redhat-linux/9/
Libraries:      -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -I/usr/include/mpich-x86_64 -I/usr/lib64/gfortran/modules/mpich -L/usr/lib64/mpich/lib -lmpifort -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -lmpi -lmpicxx -lmpi -lgfortran -lquadmath

EOS: /raid/testing/castro-gfortran/Microphysics//EOS/helmholtz
NETWORK: /raid/testing/castro-gfortran/Microphysics//networks/aprox19

Castro       git describe: 20.12-56-g26e30a199
AMReX        git describe: 20.12-20-g88236accb-dirty
Microphysics git describe: 20.12-23-g187b580e


==============================================================================
 Grid Information
==============================================================================
 level: 0
   number of boxes = 4
   maximum zones   = 256 

 level: 1
   number of boxes = 16
   maximum zones   = 1024 

 Boundary conditions
   -x: outflow
   +x: outflow


 Domain geometry info
     center: 0 , 0 , 0

     geometry.is_periodic: 0 
     geometry.coord_sys:   0
     geometry.prob_lo:     -1.6384e+09 
     geometry.prob_hi:     1.6384e+09 
     amr.n_cell:           256 
     amr.max_level:        1
     amr.ref_ratio:        4 


==============================================================================
 Species Information
==============================================================================
 index                         name              A              Z
------------------------------------------------------------------------------
     0                           H1              1              1
     1                          He3              3              2
     2                          He4              4              2
     3                          C12             12              6
     4                          N14             14              7
     5                          O16             16              8
     6                         Ne20             20             10
     7                         Mg24             24             12
     8                         Si28             28             14
     9                          S32             32             16
    10                         Ar36             36             18
    11                         Ca40             40             20
    12                         Ti44             44             22
    13                         Cr48             48             24
    14                         Fe52             52             26
    15                         Fe54             54             26
    16                         Ni56             56             28
    17                            n              1              0
    18                            p              1              1


==============================================================================
 Inputs File Parameters
==============================================================================
    castro.state_interp_order = 1
    castro.lin_limit_state_interp = 0
    castro.state_nghost = 0
    castro.do_reflux = 1
    castro.update_sources_after_reflux = 1
    castro.apply_sources_consecutively = 0
    castro.difmag = 0.1
[*] castro.small_dens = 1e-12
[*] castro.small_temp = 100000
[*] castro.small_pres = 1e-200
[*] castro.small_ener = 1e-200
[*] castro.do_hydro = 1
[*] castro.time_integration_method = 3
    castro.limit_fourth_order = 1
    castro.initialization_is_cell_average = 0
    castro.use_reconstructed_gamma1 = 0
[*] castro.add_ext_src = 1
    castro.hybrid_hydro = 0
    castro.ppm_type = 1
    castro.mhd_limit_characteristic = 1
    castro.ppm_temp_fix = 0
    castro.plm_iorder = 2
    castro.plm_limiter = 2
    castro.hybrid_riemann = 0
    castro.riemann_solver = 0
    castro.cg_maxiter = 12
    castro.cg_tol = 1e-05
    castro.cg_blend = 2
    castro.use_eos_in_riemann = 0
    castro.use_flattening = 1
    castro.transverse_use_eos = 0
    castro.transverse_reset_density = 1
    castro.transverse_reset_rhoe = 0
    castro.dual_energy_eta1 = 1
    castro.dual_energy_eta2 = 0.0001
    castro.use_pslope = 1
    castro.pslope_cutoff_density = -1e+20
    castro.limit_fluxes_on_small_dens = 0
    castro.limit_fluxes_on_large_vel = 0
    castro.speed_limit = 0
    castro.do_sponge = 0
    castro.sponge_implicit = 1
    castro.ext_src_implicit = 0
    castro.source_term_predictor = 0
    castro.first_order_hydro = 0
    castro.xl_ext_bc_type = -1
    castro.xr_ext_bc_type = -1
    castro.yl_ext_bc_type = -1
    castro.yr_ext_bc_type = -1
    castro.zl_ext_bc_type = -1
    castro.zr_ext_bc_type = -1
    castro.hse_zero_vels = 0
    castro.hse_interp_temp = 0
    castro.hse_reflect_vels = 0
[*] castro.fill_ambient_bc = 1
    castro.ambient_fill_dir = -1
    castro.ambient_outflow_vel = 0
    castro.clamp_ambient_temp = 0
    castro.ambient_safety_factor = 1.1
    castro.sdc_order = 2
    castro.sdc_quadrature = 0
    castro.sdc_extra = 0
    castro.sdc_solver = 1
    castro.sdc_solver_tol_dens = 1e-06
    castro.sdc_solver_tol_spec = 1e-06
    castro.sdc_solver_tol_ener = 1e-06
    castro.sdc_solver_atol = 1e-10
    castro.sdc_solver_relax_factor = 1
    castro.sdc_solve_for_rhoe = 1
    castro.sdc_use_analytic_jac = 1
    castro.fixed_dt = -1
    castro.initial_dt = -1
    castro.dt_cutoff = 1e-12
    castro.max_dt = 1e+200
[*] castro.cfl = 0.5
[*] castro.init_shrink = 0.1
[*] castro.change_max = 1.25
[*] castro.plot_per_is_exact = 1
[*] castro.small_plot_per_is_exact = 1
    castro.use_retry = 1
    castro.retry_subcycle_factor = 0.5
    castro.retry_small_density_cutoff = -1e+200
[*] castro.use_post_step_regrid = 1
[*] castro.max_subcycles = 128
    castro.sdc_iters = 2
    castro.dtnuc_e = 1e+200
    castro.dtnuc_T = 1e+200
    castro.dtnuc_X = 1e+200
    castro.dtnuc_X_threshold = 0.001
[*] castro.do_react = 1
    castro.react_T_min = 0
    castro.react_T_max = 1e+200
    castro.react_rho_min = 0
    castro.react_rho_max = 1e+200
    castro.disable_shock_burning = 0
    castro.T_guess = 1e+08
[*] castro.reactions_max_solve_level = 0
    castro.do_grav = -1
    castro.moving_center = 0
    castro.grav_source_type = 4
    castro.do_rotation = -1
    castro.do_acc = -1
    castro.bndry_func_thread_safe = 1
    castro.grown_factor = 1
    castro.star_at_center = -1
    castro.do_scf_initial_model = 0
    castro.scf_maximum_density = -1e+06
    castro.scf_equatorial_radius = -1e+09
    castro.scf_polar_radius = -1e+09
    castro.scf_relax_tol = 0.001
    castro.scf_max_iterations = 30
    castro.do_special_tagging = 0
    castro.spherical_star = 0
[*] castro.verbose = 1
    castro.dump_old = 0
    castro.domain_is_plane_parallel = 0
    castro.print_update_diagnostics = 0
[*] castro.sum_interval = 0
    castro.sum_per = -1
    castro.show_center_of_mass = 0
    castro.job_name = Castro
    castro.output_at_completion = 1
    castro.reset_checkpoint_time = -1e+200
    castro.reset_checkpoint_step = -1
                       use_eos_coulomb = T
                 eos_input_is_constant = T
                              eos_ttol =     0.1000000000E-07
                              eos_dtol =     0.1000000000E-07
                    prad_limiter_rho_c =     -1.000000000    
                prad_limiter_delta_rho =     -1.000000000    
                               rho_nse =      300000000.0    
                                 T_nse =      3000000000.    
                                 C_nse =     0.9999999776E-02
                             He_Fe_nse =     0.8799999952    
                                   eta =      1.000000000    
 [*]                           small_x =     0.1000000000E-11
 [*]                        use_tables = T
                    use_c12ag_deboer17 = F
                   sdc_burn_tol_factor =      1.000000000    
 [*]           do_constant_volume_burn = T
 [*]                   call_eos_in_rhs = T
                               dT_crit =     0.1000000000E+21
                 integrate_temperature = T
                      integrate_energy = T
                              jacobian =          1
                     centered_diff_jac = F
                        burner_verbose = F
 [*]                         rtol_spec =     0.1000000000E-05
                             rtol_temp =     0.1000000000E-05
                             rtol_enuc =     0.1000000000E-05
 [*]                         atol_spec =     0.1000000000E-05
                             atol_temp =     0.1000000000E-05
                             atol_enuc =     0.1000000000E-05
                            retry_burn = F
                     retry_burn_factor =      1.250000000    
                 retry_burn_max_change =      100.0000000    
 [*]                  abort_on_failure = F
 [*]            renormalize_abundances = T
                          SMALL_X_SAFE =     0.1000000000E-29
 [*]                          MAX_TEMP =     0.1000000000E+11
                           react_boost =     -1.000000000    
               reactions_density_scale =      1.000000000    
           reactions_temperature_scale =      1.000000000    
                reactions_energy_scale =      1.000000000    
                         ode_max_steps =     150000
                  use_jacobian_caching = T
                              nonaka_i =          0
                              nonaka_j =          0
                              nonaka_k =          0
                           nonaka_file = nonaka_plot.dat
  
 fortin parameters:
 [*]                               T_l =      10000000.00    
 [*]                               T_r =      10000000.00    
 [*]                              dens =      5000000.000    
                                 cfrac =     0.5000000000    
 [*]                             ofrac =     0.4500000000    
 [*]                               w_T =     0.1000000000E-11
 [*]                          center_T =     0.5000000000    
                                smallx =     0.1000000000E-11
 [*]                               vel =      200000000.0    
 [*]                 grav_acceleration =      110000000.0    
                                  idir =          1
 [*]                use_early_stopping =          1
                     ts_te_stop_cutoff =     0.1000000000+201
 [*]                     T_stop_cutoff =      4000000000.    
