MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-5-gdfee5b74765e) initialized Starting run at 14:44:58 UTC on 2022-01-05. Successfully read inputs file ... Castro git describe: 21.12-20-gf1430c2db AMReX git describe: 22.01-5-gdfee5b747 Microphysics git describe: 22.01-13-gb4d04fb4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015058415 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368785825 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.333635511 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331213373 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.324647878 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.345209906 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.320459522 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.30775962 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.308233498 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.307874162 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.306807699 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010255514 seconds Ending run at 14:45:01 UTC on 2022-01-05. Run time = 3.497982264 Run time without initialization = 3.26918602 Average number of zones advanced per microsecond: 0.802 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.497 ... 3.498 ... 3.498 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2737 2.3205 2.3437 67.00% Gravity::make_radial_gravity() 21 0.3476 0.3526 0.3622 10.36% Castro::initData() 1 0.04168 0.09295 0.1605 4.59% Castro::estTimeStep() 21 0.02825 0.09519 0.1403 4.01% MultiFab::min() 10 0.03722 0.0632 0.1116 3.19% FabArray::ParallelCopy_finish() 41 0.03365 0.04312 0.07526 2.15% FabArray::setVal() 139 0.05581 0.06612 0.07382 2.11% Castro::reset_internal_energy() 63 0.04787 0.04912 0.04984 1.42% Castro::normalize_species() 62 0.04304 0.04388 0.04461 1.28% StateData::FillBoundary(geom) 41 0.03812 0.04065 0.0425 1.21% FabArray::ParallelCopy_nowait() 41 0.03479 0.0398 0.0415 1.19% FillPatchIterator::Initialize 41 0.02534 0.02976 0.03216 0.92% Gravity::interpolate_monopole_grav() 21 0.02796 0.02856 0.02911 0.83% Castro::construct_new_gravity_source() 10 0.02103 0.02263 0.02533 0.72% Castro::do_advance_ctu() 10 0.0174 0.01974 0.02228 0.64% Castro::expand_state() 10 0.01257 0.01686 0.01878 0.54% Castro::computeTemp() 63 0.01737 0.01782 0.01848 0.53% Castro::initialize_do_advance() 10 0.01125 0.01541 0.01693 0.48% VisMF::Write(FabArray) 2 0.01298 0.01381 0.01613 0.46% MultiFab::Saxpy() 20 0.01232 0.0137 0.0144 0.41% Castro::initialize_advance() 10 0.004506 0.009929 0.01261 0.36% Amr::writePlotFile() 2 0.009384 0.01168 0.01249 0.36% Gravity::get_new_grav_vector() 11 0.008771 0.01039 0.01169 0.33% MultiFab::contains_nan() 20 0.01022 0.01084 0.01155 0.33% Castro::construct_old_gravity_source() 10 0.00761 0.01029 0.01093 0.31% FabArray::setDomainBndry() 41 0.00642 0.009183 0.01079 0.31% Amr::defBaseLevel() 1 0.006956 0.007977 0.01022 0.29% Gravity::get_old_grav_vector() 10 0.007332 0.008413 0.009258 0.26% Castro::construct_new_source() 50 0.005739 0.006353 0.006631 0.19% Castro::enforce_min_density() 62 0.005917 0.006175 0.006523 0.19% StateData::define() 4 0.00439 0.005015 0.006326 0.18% main() 1 0.00386 0.004453 0.00478 0.14% Castro::swap_state_time_levels() 10 0.002564 0.003431 0.003914 0.11% Amr::coarseTimeStep() 10 0.0005528 0.0009061 0.001886 0.05% Castro::finalize_do_advance() 10 0.0004875 0.00123 0.001433 0.04% Castro::clean_state() 62 0.001028 0.001062 0.001101 0.03% Amr::timeStep() 10 0.0002625 0.0003089 0.0005108 0.01% Amr::InitAmr() 1 0.0001793 0.0002294 0.0004612 0.01% FabArray::ParallelCopy() 41 0.0004176 0.0004363 0.0004558 0.01% FillPatchSingleLevel 41 0.0004081 0.0004306 0.0004445 0.01% StateDataPhysBCFunct::() 41 0.0003477 0.0003632 0.0003914 0.01% Castro::do_old_sources() 10 0.000331 0.0003524 0.0003699 0.01% Castro::do_new_sources() 10 0.0003266 0.000346 0.0003654 0.01% DistributionMapping::LeastUsedCPUs() 1 1.296e-05 0.0002764 0.0003336 0.01% Castro::construct_old_source() 50 0.000237 0.0002666 0.000284 0.01% Castro::enforce_speed_limit() 62 0.0002022 0.0002119 0.0002273 0.01% FabArrayBase::getCPC() 41 0.0001658 0.000175 0.0001957 0.01% Castro::advance() 10 0.0001717 0.0001788 0.0001837 0.01% Castro::apply_source_to_state() 20 0.000151 0.000161 0.0001765 0.01% Castro::finalize_advance() 10 0.0001446 0.0001563 0.00017 0.00% Castro::construct_new_gravity() 10 0.0001189 0.0001344 0.0001534 0.00% Castro::subcycle_advance_ctu() 10 0.0001196 0.0001272 0.0001507 0.00% Castro::check_for_nan() 20 0.0001343 0.0001394 0.0001503 0.00% Castro::construct_old_gravity() 10 0.000129 0.0001417 0.0001502 0.00% Castro::enforce_consistent_e() 1 8.179e-05 9.43e-05 0.0001227 0.00% Amr::FinalizeInit() 1 1.504e-05 2.848e-05 0.0001159 0.00% Castro::computeNewDt() 9 5.946e-05 6.271e-05 7.504e-05 0.00% Castro::post_timestep() 10 6.562e-05 6.821e-05 6.954e-05 0.00% Gravity::swapTimeLevels() 10 3.542e-05 3.836e-05 4.808e-05 0.00% Castro::create_source_corrector() 10 3.975e-05 4.342e-05 4.717e-05 0.00% FabArrayBase::CPC::define() 2 2.65e-05 3.096e-05 4.375e-05 0.00% Castro::FluxRegFineAdd() 10 3.575e-05 3.654e-05 3.746e-05 0.00% Gravity::set_mass_offset() 10 3.388e-05 3.524e-05 3.65e-05 0.00% Castro::retry_advance_ctu() 10 3.404e-05 3.498e-05 3.571e-05 0.00% Amr::writeSmallPlotFile() 1 1.533e-05 2.44e-05 3.279e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.992e-05 2.426e-05 3.042e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 1.146e-05 1.359e-05 2.45e-05 0.00% Castro::post_init() 1 1.208e-05 1.544e-05 1.75e-05 0.00% Castro::computeInitialDt() 2 1.537e-05 1.603e-05 1.7e-05 0.00% Amr::InitializeInit() 1 6.667e-06 8.495e-06 1.308e-05 0.00% Amr::init() 1 1.1e-05 1.149e-05 1.213e-05 0.00% Amr::initialInit() 1 1.025e-05 1.065e-05 1.121e-05 0.00% Amr::initSubcycle() 1 5.333e-06 8.073e-06 1.075e-05 0.00% Castro::post_regrid() 1 8.291e-06 9.006e-06 9.543e-06 0.00% DistributionMapping::Distribute() 1 3.041e-06 4.088e-06 4.5e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.497 3.498 3.498 100.00% Amr::coarseTimeStep() 10 3.254 3.254 3.254 93.03% Amr::timeStep() 10 3.245 3.245 3.246 92.79% Castro::advance() 10 3.228 3.229 3.229 92.31% Castro::subcycle_advance_ctu() 10 3.155 3.16 3.171 90.65% Castro::do_advance_ctu() 10 3.155 3.16 3.171 90.64% Castro::construct_ctu_hydro_source() 10 2.274 2.32 2.344 67.00% Gravity::make_radial_gravity() 21 0.3476 0.3526 0.3622 10.36% Gravity::get_new_grav_vector() 11 0.2268 0.2288 0.2304 6.59% Amr::init() 1 0.2281 0.2284 0.2285 6.53% Castro::construct_old_gravity() 10 0.2041 0.2092 0.2175 6.22% Gravity::get_old_grav_vector() 10 0.2033 0.2084 0.2167 6.20% Amr::initialInit() 1 0.2129 0.2132 0.2135 6.10% Castro::construct_new_gravity() 10 0.2008 0.2023 0.2037 5.82% Amr::InitializeInit() 1 0.05968 0.1125 0.1834 5.24% Amr::defBaseLevel() 1 0.05967 0.1125 0.1834 5.24% FillPatchIterator::Initialize 41 0.1493 0.164 0.1813 5.18% Castro::initData() 1 0.0457 0.09715 0.1649 4.72% Castro::initialize_do_advance() 10 0.1411 0.1532 0.1593 4.55% Amr::FinalizeInit() 1 0.02977 0.1007 0.1533 4.38% FillPatchSingleLevel 41 0.1153 0.125 0.1496 4.28% Castro::estTimeStep() 21 0.02825 0.09519 0.1403 4.01% Castro::computeInitialDt() 2 0.001716 0.07264 0.1256 3.59% Castro::clean_state() 62 0.1151 0.1172 0.1193 3.41% Castro::expand_state() 10 0.09503 0.1077 0.1155 3.30% MultiFab::min() 10 0.03722 0.0632 0.1116 3.19% FabArray::ParallelCopy() 41 0.07452 0.08356 0.1107 3.16% FabArray::ParallelCopy_finish() 41 0.03365 0.04312 0.07526 2.15% FabArray::setVal() 139 0.05581 0.06612 0.07382 2.11% Castro::initialize_advance() 10 0.05693 0.06863 0.07345 2.10% Castro::do_new_sources() 10 0.05779 0.06203 0.06916 1.98% Castro::computeTemp() 63 0.06525 0.06694 0.06797 1.94% Castro::reset_internal_energy() 63 0.04787 0.04912 0.04984 1.42% Castro::do_old_sources() 10 0.0413 0.0456 0.04725 1.35% Castro::normalize_species() 62 0.04304 0.04388 0.04461 1.28% StateDataPhysBCFunct::() 41 0.03849 0.04102 0.04286 1.23% StateData::FillBoundary(geom) 41 0.03812 0.04065 0.0425 1.21% FabArray::ParallelCopy_nowait() 41 0.03501 0.04001 0.04169 1.19% Castro::construct_new_source() 50 0.02743 0.02898 0.03187 0.91% Gravity::interpolate_monopole_grav() 21 0.02796 0.02856 0.02911 0.83% Castro::post_init() 1 0.02718 0.02743 0.02761 0.79% Amr::writePlotFile() 2 0.02526 0.02549 0.02578 0.74% Castro::construct_new_gravity_source() 10 0.02103 0.02263 0.02533 0.72% Castro::post_timestep() 10 0.01581 0.01609 0.01654 0.47% VisMF::Write(FabArray) 2 0.01298 0.01381 0.01613 0.46% Castro::apply_source_to_state() 20 0.01248 0.01386 0.01457 0.42% MultiFab::Saxpy() 20 0.01232 0.0137 0.0144 0.41% Castro::check_for_nan() 20 0.01036 0.01098 0.01168 0.33% MultiFab::contains_nan() 20 0.01022 0.01084 0.01155 0.33% Castro::construct_old_source() 50 0.007847 0.01056 0.0112 0.32% Castro::construct_old_gravity_source() 10 0.00761 0.01029 0.01093 0.31% FabArray::setDomainBndry() 41 0.00642 0.009183 0.01079 0.31% Castro::computeNewDt() 9 0.006381 0.007121 0.007709 0.22% Castro::enforce_min_density() 62 0.005917 0.006175 0.006523 0.19% AmrLevel::AmrLevel(dm) 1 0.004418 0.005039 0.006357 0.18% StateData::define() 4 0.00439 0.005015 0.006326 0.18% Castro::swap_state_time_levels() 10 0.002564 0.003431 0.003914 0.11% Castro::post_regrid() 1 0.001384 0.001471 0.001651 0.05% Castro::finalize_do_advance() 10 0.0004875 0.00123 0.001433 0.04% Amr::InitAmr() 1 0.0001847 0.0002374 0.0004718 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 4.05e-05 0.0002941 0.0003495 0.01% DistributionMapping::LeastUsedCPUs() 1 1.296e-05 0.0002764 0.0003336 0.01% Castro::enforce_speed_limit() 62 0.0002022 0.0002119 0.0002273 0.01% FabArrayBase::getCPC() 41 0.0001939 0.000206 0.0002243 0.01% Castro::finalize_advance() 10 0.0001816 0.0001928 0.0002068 0.01% Castro::enforce_consistent_e() 1 8.179e-05 9.43e-05 0.0001227 0.00% Gravity::swapTimeLevels() 10 3.542e-05 3.836e-05 4.808e-05 0.00% Castro::create_source_corrector() 10 3.975e-05 4.342e-05 4.717e-05 0.00% FabArrayBase::CPC::define() 2 2.65e-05 3.096e-05 4.375e-05 0.00% Castro::FluxRegFineAdd() 10 3.575e-05 3.654e-05 3.746e-05 0.00% Gravity::set_mass_offset() 10 3.388e-05 3.524e-05 3.65e-05 0.00% Castro::retry_advance_ctu() 10 3.404e-05 3.498e-05 3.571e-05 0.00% Amr::writeSmallPlotFile() 1 1.533e-05 2.44e-05 3.279e-05 0.00% Amr::initSubcycle() 1 5.333e-06 8.073e-06 1.075e-05 0.00% DistributionMapping::Distribute() 1 3.041e-06 4.088e-06 4.5e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-5-gdfee5b74765e) finalized