MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-9-gaa079d4dc93b) initialized Starting run at 17:56:28 UTC on 2022-01-06. Successfully read inputs file ... Castro git describe: 21.12-24-ga0d4c0dd6 AMReX git describe: 22.01-9-gaa079d4dc Microphysics git describe: 22.01-8-gef649336 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014152699 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351582523 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335376562 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331587125 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332608839 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.338441704 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.331282082 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.321094528 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.322442994 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.345440324 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.320015981 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01106735 seconds Ending run at 17:56:32 UTC on 2022-01-06. Run time = 3.535119057 Run time without initialization = 3.346098185 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.534 ... 3.535 ... 3.535 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2298 2.3443 2.4147 68.31% Gravity::make_radial_gravity() 21 0.3421 0.3494 0.3627 10.26% MultiFab::min() 10 0.01946 0.09287 0.2131 6.03% Castro::initData() 1 0.042 0.08215 0.1248 3.53% Castro::estTimeStep() 21 0.02487 0.07009 0.1124 3.18% FabArray::setVal() 139 0.07012 0.0716 0.0724 2.05% FabArray::ParallelCopy_finish() 41 0.03858 0.04915 0.06871 1.94% Castro::reset_internal_energy() 63 0.04763 0.04886 0.04964 1.40% StateData::FillBoundary(geom) 41 0.03951 0.04185 0.04489 1.27% FabArray::ParallelCopy_nowait() 41 0.03594 0.04159 0.04471 1.26% Castro::normalize_species() 62 0.04306 0.04352 0.04464 1.26% FillPatchIterator::Initialize 41 0.02361 0.03067 0.03472 0.98% Gravity::interpolate_monopole_grav() 21 0.02748 0.02845 0.02911 0.82% Castro::construct_new_gravity_source() 10 0.02241 0.02327 0.02427 0.69% Castro::do_advance_ctu() 10 0.01844 0.0208 0.02177 0.62% Castro::expand_state() 10 0.01237 0.01793 0.02071 0.59% Castro::computeTemp() 63 0.01729 0.01781 0.01817 0.51% Castro::initialize_do_advance() 10 0.01066 0.0154 0.01758 0.50% MultiFab::Saxpy() 20 0.01326 0.01425 0.01529 0.43% VisMF::Write(FabArray) 2 0.01184 0.0125 0.0151 0.43% Amr::writePlotFile() 2 0.0103 0.01309 0.01387 0.39% Castro::initialize_advance() 10 0.01081 0.01153 0.01267 0.36% MultiFab::contains_nan() 20 0.01071 0.01133 0.01182 0.33% Gravity::get_new_grav_vector() 11 0.01067 0.01116 0.0118 0.33% FabArray::setDomainBndry() 41 0.006088 0.009473 0.01169 0.33% Castro::construct_old_gravity_source() 10 0.007679 0.01047 0.01149 0.33% Gravity::get_old_grav_vector() 10 0.007321 0.009079 0.01052 0.30% Amr::defBaseLevel() 1 0.006663 0.007634 0.01005 0.28% Castro::construct_new_source() 50 0.006036 0.006652 0.006989 0.20% Castro::enforce_min_density() 62 0.006152 0.006298 0.006625 0.19% StateData::define() 4 0.004324 0.00495 0.006275 0.18% main() 1 0.003624 0.004593 0.005202 0.15% Castro::swap_state_time_levels() 10 0.002794 0.00367 0.003822 0.11% Castro::finalize_do_advance() 10 0.00125 0.001403 0.001497 0.04% Castro::clean_state() 62 0.00105 0.001068 0.001106 0.03% Amr::coarseTimeStep() 10 0.0005156 0.0006446 0.0007783 0.02% Amr::timeStep() 10 0.000263 0.0003228 0.0005443 0.02% FabArray::ParallelCopy() 41 0.0004316 0.0004503 0.0004672 0.01% FillPatchSingleLevel 41 0.0004115 0.0004308 0.0004463 0.01% Castro::do_new_sources() 10 0.0003405 0.0003608 0.0003912 0.01% StateDataPhysBCFunct::() 41 0.0003499 0.0003683 0.0003894 0.01% Castro::do_old_sources() 10 0.0003305 0.0003521 0.0003803 0.01% Amr::InitAmr() 1 0.0001972 0.0002384 0.0003244 0.01% Castro::construct_old_source() 50 0.0002524 0.0002755 0.0002985 0.01% Castro::enforce_speed_limit() 62 0.0002053 0.0002108 0.0002175 0.01% Castro::advance() 10 0.0001768 0.0001876 0.000201 0.01% FabArrayBase::getCPC() 41 0.0001725 0.00018 0.0001984 0.01% Castro::apply_source_to_state() 20 0.0001564 0.0001723 0.0001969 0.01% Castro::finalize_advance() 10 0.0001601 0.000167 0.0001796 0.01% Castro::construct_new_gravity() 10 0.0001255 0.0001404 0.0001689 0.00% Castro::construct_old_gravity() 10 0.000137 0.0001523 0.0001628 0.00% Castro::subcycle_advance_ctu() 10 0.0001299 0.000138 0.0001498 0.00% Castro::check_for_nan() 20 0.0001346 0.0001397 0.0001444 0.00% DistributionMapping::LeastUsedCPUs() 1 7.75e-06 8.549e-05 0.0001298 0.00% Amr::FinalizeInit() 1 1.304e-05 2.766e-05 0.0001099 0.00% Castro::enforce_consistent_e() 1 7.946e-05 8.294e-05 8.821e-05 0.00% Castro::post_timestep() 10 6.729e-05 6.881e-05 7.034e-05 0.00% Castro::computeNewDt() 9 6.154e-05 6.364e-05 6.604e-05 0.00% FabArrayBase::CPC::define() 2 2.571e-05 3.273e-05 4.971e-05 0.00% Castro::create_source_corrector() 10 4.125e-05 4.34e-05 4.575e-05 0.00% Gravity::swapTimeLevels() 10 3.358e-05 3.745e-05 4.467e-05 0.00% Castro::FluxRegFineAdd() 10 3.629e-05 3.701e-05 3.779e-05 0.00% Castro::retry_advance_ctu() 10 3.608e-05 3.674e-05 3.741e-05 0.00% Gravity::set_mass_offset() 10 3.358e-05 3.499e-05 3.588e-05 0.00% Amr::writeSmallPlotFile() 1 1.6e-05 2.294e-05 3.304e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.063e-05 2.323e-05 2.875e-05 0.00% Amr::initialInit() 1 9.959e-06 1.185e-05 2.129e-05 0.00% Castro::post_init() 1 1.375e-05 1.545e-05 1.992e-05 0.00% Castro::computeInitialDt() 2 1.367e-05 1.43e-05 1.458e-05 0.00% Amr::init() 1 1.058e-05 1.173e-05 1.333e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 9.458e-06 1.085e-05 1.225e-05 0.00% Amr::InitializeInit() 1 6.749e-06 8.234e-06 1.15e-05 0.00% Amr::initSubcycle() 1 6.792e-06 8.032e-06 1.096e-05 0.00% Castro::post_regrid() 1 5.667e-06 8.104e-06 1.004e-05 0.00% DistributionMapping::Distribute() 1 2.417e-06 3.839e-06 4.666e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.534 3.535 3.535 100.00% Amr::coarseTimeStep() 10 3.33 3.33 3.33 94.19% Amr::timeStep() 10 3.321 3.322 3.322 93.97% Castro::advance() 10 3.305 3.305 3.306 93.50% Castro::subcycle_advance_ctu() 10 3.23 3.231 3.233 91.45% Castro::do_advance_ctu() 10 3.23 3.231 3.233 91.45% Castro::construct_ctu_hydro_source() 10 2.23 2.344 2.415 68.31% Gravity::make_radial_gravity() 21 0.3421 0.3494 0.3627 10.26% Gravity::get_new_grav_vector() 11 0.2277 0.23 0.2324 6.58% Castro::construct_old_gravity() 10 0.2009 0.2085 0.2193 6.20% Gravity::get_old_grav_vector() 10 0.1999 0.2076 0.2185 6.18% MultiFab::min() 10 0.01946 0.09287 0.2131 6.03% Castro::construct_new_gravity() 10 0.2038 0.2055 0.2076 5.87% Amr::init() 1 0.1885 0.1886 0.1887 5.34% FillPatchIterator::Initialize 41 0.1713 0.1742 0.1795 5.08% Amr::initialInit() 1 0.1739 0.1741 0.1743 4.93% Castro::initialize_do_advance() 10 0.1479 0.1585 0.1653 4.68% Amr::InitializeInit() 1 0.05972 0.1008 0.1464 4.14% Amr::defBaseLevel() 1 0.05971 0.1008 0.1464 4.14% FillPatchSingleLevel 41 0.1258 0.134 0.1462 4.14% Castro::initData() 1 0.04582 0.08597 0.1284 3.63% Castro::clean_state() 62 0.1157 0.1169 0.119 3.37% Castro::expand_state() 10 0.1073 0.1131 0.1187 3.36% Amr::FinalizeInit() 1 0.02776 0.07333 0.1145 3.24% Castro::estTimeStep() 21 0.02487 0.07009 0.1124 3.18% FabArray::ParallelCopy() 41 0.0829 0.0914 0.1053 2.98% Castro::computeInitialDt() 2 0.001608 0.04723 0.08824 2.50% Castro::initialize_advance() 10 0.07213 0.07354 0.07469 2.11% FabArray::setVal() 139 0.07012 0.0716 0.0724 2.05% FabArray::ParallelCopy_finish() 41 0.03858 0.04915 0.06871 1.94% Castro::do_new_sources() 10 0.06278 0.06462 0.06793 1.92% Castro::computeTemp() 63 0.06552 0.06668 0.0676 1.91% Castro::reset_internal_energy() 63 0.04763 0.04886 0.04964 1.40% Castro::do_old_sources() 10 0.04226 0.04657 0.04886 1.38% StateDataPhysBCFunct::() 41 0.03987 0.04222 0.04526 1.28% FabArray::ParallelCopy_nowait() 41 0.03616 0.0418 0.04494 1.27% StateData::FillBoundary(geom) 41 0.03951 0.04185 0.04489 1.27% Castro::normalize_species() 62 0.04306 0.04352 0.04464 1.26% Castro::construct_new_source() 50 0.02844 0.02993 0.03077 0.87% Gravity::interpolate_monopole_grav() 21 0.02748 0.02845 0.02911 0.82% Amr::writePlotFile() 2 0.0254 0.0256 0.02575 0.73% Castro::post_init() 1 0.02537 0.02552 0.02561 0.72% Castro::construct_new_gravity_source() 10 0.02241 0.02327 0.02427 0.69% Castro::post_timestep() 10 0.01587 0.016 0.01626 0.46% Castro::apply_source_to_state() 20 0.01346 0.01442 0.01549 0.44% MultiFab::Saxpy() 20 0.01326 0.01425 0.01529 0.43% VisMF::Write(FabArray) 2 0.01184 0.0125 0.0151 0.43% Castro::check_for_nan() 20 0.01085 0.01147 0.01197 0.34% MultiFab::contains_nan() 20 0.01071 0.01133 0.01182 0.33% Castro::construct_old_source() 50 0.007941 0.01074 0.01178 0.33% FabArray::setDomainBndry() 41 0.006088 0.009473 0.01169 0.33% Castro::construct_old_gravity_source() 10 0.007679 0.01047 0.01149 0.33% Castro::computeNewDt() 9 0.006339 0.006674 0.007012 0.20% Castro::enforce_min_density() 62 0.006152 0.006298 0.006625 0.19% AmrLevel::AmrLevel(dm) 1 0.004346 0.004973 0.006304 0.18% StateData::define() 4 0.004324 0.00495 0.006275 0.18% Castro::swap_state_time_levels() 10 0.002794 0.00367 0.003822 0.11% Castro::finalize_do_advance() 10 0.00125 0.001403 0.001497 0.04% Castro::post_regrid() 1 0.001388 0.001426 0.001469 0.04% Amr::InitAmr() 1 0.000204 0.0002464 0.0003318 0.01% FabArrayBase::getCPC() 41 0.0001984 0.0002127 0.0002331 0.01% Castro::enforce_speed_limit() 62 0.0002053 0.0002108 0.0002175 0.01% Castro::finalize_advance() 10 0.000197 0.000204 0.0002174 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 2.258e-05 0.0001002 0.0001445 0.00% DistributionMapping::LeastUsedCPUs() 1 7.75e-06 8.549e-05 0.0001298 0.00% Castro::enforce_consistent_e() 1 7.946e-05 8.294e-05 8.821e-05 0.00% FabArrayBase::CPC::define() 2 2.571e-05 3.273e-05 4.971e-05 0.00% Castro::create_source_corrector() 10 4.125e-05 4.34e-05 4.575e-05 0.00% Gravity::swapTimeLevels() 10 3.358e-05 3.745e-05 4.467e-05 0.00% Castro::FluxRegFineAdd() 10 3.629e-05 3.701e-05 3.779e-05 0.00% Castro::retry_advance_ctu() 10 3.608e-05 3.674e-05 3.741e-05 0.00% Gravity::set_mass_offset() 10 3.358e-05 3.499e-05 3.588e-05 0.00% Amr::writeSmallPlotFile() 1 1.6e-05 2.294e-05 3.304e-05 0.00% Amr::initSubcycle() 1 6.792e-06 8.032e-06 1.096e-05 0.00% DistributionMapping::Distribute() 1 2.417e-06 3.839e-06 4.666e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-9-gaa079d4dc93b) finalized