MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-6-g5726371bbb1a) initialized Starting run at 06:32:59 UTC on 2022-01-06. Successfully read inputs file ... Castro git describe: 21.12-22-gc735d2ef9 AMReX git describe: 22.01-6-g5726371bb Microphysics git describe: 22.01-13-gb4d04fb4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014139284 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351181678 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.360287144 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.370437699 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332586953 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353615192 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.323828365 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312518262 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311640008 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312069802 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31088317 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010427514 seconds Ending run at 06:33:02 UTC on 2022-01-06. Run time = 3.534644604 Run time without initialization = 3.353791475 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.534 ... 3.534 ... 3.535 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2619 2.3595 2.4102 68.19% Gravity::make_radial_gravity() 21 0.3373 0.3423 0.35 9.90% MultiFab::min() 10 0.04462 0.09647 0.1977 5.59% Castro::initData() 1 0.04298 0.0822 0.1195 3.38% Castro::estTimeStep() 21 0.01687 0.05791 0.1008 2.85% FabArray::setVal() 139 0.06849 0.0728 0.07835 2.22% Castro::reset_internal_energy() 63 0.04824 0.04959 0.05071 1.43% FabArray::ParallelCopy_finish() 41 0.03372 0.03984 0.04919 1.39% StateData::FillBoundary(geom) 41 0.04027 0.04338 0.04547 1.29% Castro::normalize_species() 62 0.04318 0.04413 0.0454 1.28% FabArray::ParallelCopy_nowait() 41 0.03936 0.0424 0.04385 1.24% FillPatchIterator::Initialize 41 0.0266 0.03243 0.03509 0.99% Gravity::interpolate_monopole_grav() 21 0.02796 0.02844 0.02891 0.82% Castro::construct_new_gravity_source() 10 0.02168 0.02342 0.02561 0.72% Castro::do_advance_ctu() 10 0.01971 0.02122 0.024 0.68% Castro::expand_state() 10 0.01539 0.01879 0.02061 0.58% Castro::computeTemp() 63 0.01735 0.01776 0.01816 0.51% Castro::initialize_do_advance() 10 0.01398 0.01627 0.01805 0.51% VisMF::Write(FabArray) 2 0.01275 0.01322 0.01533 0.43% MultiFab::Saxpy() 20 0.01435 0.01469 0.01507 0.43% Castro::initialize_advance() 10 0.01007 0.01177 0.01362 0.39% Gravity::get_new_grav_vector() 11 0.0111 0.01159 0.01274 0.36% FabArray::setDomainBndry() 41 0.007972 0.01059 0.01244 0.35% Amr::writePlotFile() 2 0.009433 0.01172 0.01228 0.35% MultiFab::contains_nan() 20 0.01061 0.01087 0.01146 0.32% Castro::construct_old_gravity_source() 10 0.01006 0.0109 0.01119 0.32% Gravity::get_old_grav_vector() 10 0.008498 0.009498 0.01014 0.29% Castro::enforce_min_density() 62 0.006568 0.006908 0.007224 0.20% Amr::defBaseLevel() 1 0.006946 0.006978 0.007002 0.20% Castro::construct_new_source() 50 0.006603 0.006669 0.006788 0.19% StateData::define() 4 0.00453 0.004555 0.004609 0.13% main() 1 0.003354 0.00385 0.004343 0.12% Castro::swap_state_time_levels() 10 0.002807 0.0037 0.003866 0.11% Castro::finalize_do_advance() 10 0.001029 0.001131 0.001233 0.03% Amr::coarseTimeStep() 10 0.0005504 0.0007407 0.001152 0.03% Castro::clean_state() 62 0.001029 0.001065 0.001108 0.03% Amr::timeStep() 10 0.0002611 0.0003277 0.0005613 0.02% FabArray::ParallelCopy() 41 0.0004339 0.0004478 0.000467 0.01% FillPatchSingleLevel 41 0.0004146 0.0004274 0.0004445 0.01% Castro::do_new_sources() 10 0.0003463 0.0003593 0.00039 0.01% StateDataPhysBCFunct::() 41 0.0003301 0.0003596 0.0003885 0.01% Castro::do_old_sources() 10 0.0003521 0.0003591 0.0003691 0.01% Castro::construct_old_source() 50 0.0002648 0.0002799 0.0003021 0.01% Amr::InitAmr() 1 0.0001791 0.0001987 0.0002994 0.01% FabArrayBase::getCPC() 41 0.0001616 0.0001901 0.0002229 0.01% Castro::enforce_speed_limit() 62 0.0002044 0.0002085 0.0002172 0.01% Castro::apply_source_to_state() 20 0.0001587 0.0001674 0.0001987 0.01% Castro::advance() 10 0.000172 0.0001798 0.0001923 0.01% Castro::construct_old_gravity() 10 0.0001442 0.0001549 0.0001797 0.01% Castro::finalize_advance() 10 0.0001482 0.0001565 0.0001663 0.00% Castro::check_for_nan() 20 0.0001388 0.000148 0.0001588 0.00% Castro::construct_new_gravity() 10 0.0001256 0.0001386 0.000157 0.00% Castro::subcycle_advance_ctu() 10 0.0001235 0.0001284 0.0001423 0.00% DistributionMapping::LeastUsedCPUs() 1 8.5e-06 0.0001081 0.0001366 0.00% Castro::enforce_consistent_e() 1 7.763e-05 8.849e-05 0.000107 0.00% Amr::FinalizeInit() 1 2.3e-05 3.373e-05 9.904e-05 0.00% Castro::computeNewDt() 9 6.008e-05 6.279e-05 7.504e-05 0.00% Castro::post_timestep() 10 6.7e-05 6.938e-05 7.146e-05 0.00% FabArrayBase::CPC::define() 2 2.567e-05 3.324e-05 5.592e-05 0.00% Gravity::set_mass_offset() 10 3.25e-05 3.653e-05 4.613e-05 0.00% Castro::create_source_corrector() 10 4.121e-05 4.196e-05 4.304e-05 0.00% Gravity::swapTimeLevels() 10 3.546e-05 3.892e-05 4.196e-05 0.00% Castro::retry_advance_ctu() 10 3.484e-05 3.573e-05 3.675e-05 0.00% Castro::FluxRegFineAdd() 10 3.471e-05 3.517e-05 3.558e-05 0.00% Amr::writeSmallPlotFile() 1 1.667e-05 2.569e-05 3.317e-05 0.00% Castro::post_init() 1 1.171e-05 1.82e-05 3.046e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.929e-05 2.11e-05 2.479e-05 0.00% Castro::computeInitialDt() 2 1.362e-05 1.427e-05 1.567e-05 0.00% Amr::initialInit() 1 1e-05 1.097e-05 1.546e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 8.585e-06 1.068e-05 1.4e-05 0.00% Amr::InitializeInit() 1 6.583e-06 7.714e-06 1.138e-05 0.00% Amr::init() 1 9.833e-06 1.051e-05 1.104e-05 0.00% Castro::post_regrid() 1 7.958e-06 8.349e-06 8.75e-06 0.00% Amr::initSubcycle() 1 5.042e-06 6.995e-06 7.834e-06 0.00% DistributionMapping::Distribute() 1 3.083e-06 3.427e-06 4.083e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.534 3.534 3.535 100.00% Amr::coarseTimeStep() 10 3.339 3.339 3.339 94.47% Amr::timeStep() 10 3.33 3.331 3.331 94.24% Castro::advance() 10 3.314 3.314 3.314 93.76% Castro::subcycle_advance_ctu() 10 3.236 3.239 3.242 91.72% Castro::do_advance_ctu() 10 3.235 3.239 3.242 91.72% Castro::construct_ctu_hydro_source() 10 2.262 2.359 2.41 68.19% Gravity::make_radial_gravity() 21 0.3373 0.3423 0.35 9.90% Gravity::get_new_grav_vector() 11 0.2232 0.225 0.2262 6.40% Castro::construct_old_gravity() 10 0.2019 0.2057 0.2122 6.00% Gravity::get_old_grav_vector() 10 0.201 0.2048 0.2113 5.98% Castro::construct_new_gravity() 10 0.1993 0.2006 0.2015 5.70% MultiFab::min() 10 0.04462 0.09647 0.1977 5.59% Amr::init() 1 0.1804 0.1805 0.1805 5.11% FillPatchIterator::Initialize 41 0.1637 0.1701 0.1759 4.98% Castro::initialize_do_advance() 10 0.1495 0.1597 0.1665 4.71% Amr::initialInit() 1 0.1659 0.1661 0.1662 4.70% Amr::InitializeInit() 1 0.06186 0.1011 0.1383 3.91% Amr::defBaseLevel() 1 0.06185 0.1011 0.1383 3.91% FillPatchSingleLevel 41 0.1206 0.1271 0.1303 3.69% Castro::initData() 1 0.04708 0.08638 0.1236 3.50% Castro::clean_state() 62 0.1165 0.1187 0.1206 3.41% Castro::expand_state() 10 0.1045 0.1125 0.1196 3.38% Amr::FinalizeInit() 1 0.02783 0.06495 0.1041 2.94% Castro::estTimeStep() 21 0.01687 0.05791 0.1008 2.85% FabArray::ParallelCopy() 41 0.07721 0.08291 0.08924 2.52% FabArray::setVal() 139 0.06849 0.0728 0.07835 2.22% Castro::initialize_advance() 10 0.07154 0.07427 0.0782 2.21% Castro::computeInitialDt() 2 0.001605 0.03881 0.07808 2.21% Castro::do_new_sources() 10 0.06115 0.06467 0.06902 1.95% Castro::computeTemp() 63 0.06616 0.06735 0.06887 1.95% Castro::reset_internal_energy() 63 0.04824 0.04959 0.05071 1.43% FabArray::ParallelCopy_finish() 41 0.03372 0.03984 0.04919 1.39% Castro::do_old_sources() 10 0.04599 0.04729 0.04805 1.36% StateDataPhysBCFunct::() 41 0.04065 0.04374 0.04582 1.30% StateData::FillBoundary(geom) 41 0.04027 0.04338 0.04547 1.29% Castro::normalize_species() 62 0.04318 0.04413 0.0454 1.28% FabArray::ParallelCopy_nowait() 41 0.03961 0.04262 0.04405 1.25% Castro::construct_new_source() 50 0.02832 0.03009 0.0324 0.92% Gravity::interpolate_monopole_grav() 21 0.02796 0.02844 0.02891 0.82% Castro::construct_new_gravity_source() 10 0.02168 0.02342 0.02561 0.72% Castro::post_init() 1 0.02529 0.02549 0.02559 0.72% Amr::writePlotFile() 2 0.02476 0.02494 0.0251 0.71% Castro::post_timestep() 10 0.01606 0.01628 0.01655 0.47% VisMF::Write(FabArray) 2 0.01275 0.01322 0.01533 0.43% Castro::apply_source_to_state() 20 0.01454 0.01486 0.01525 0.43% MultiFab::Saxpy() 20 0.01435 0.01469 0.01507 0.43% FabArray::setDomainBndry() 41 0.007972 0.01059 0.01244 0.35% Castro::check_for_nan() 20 0.01077 0.01102 0.01162 0.33% Castro::construct_old_source() 50 0.01033 0.01118 0.01148 0.32% MultiFab::contains_nan() 20 0.01061 0.01087 0.01146 0.32% Castro::construct_old_gravity_source() 10 0.01006 0.0109 0.01119 0.32% Castro::enforce_min_density() 62 0.006568 0.006908 0.007224 0.20% Castro::computeNewDt() 9 0.006293 0.006771 0.007186 0.20% AmrLevel::AmrLevel(dm) 1 0.00455 0.004576 0.00463 0.13% StateData::define() 4 0.00453 0.004555 0.004609 0.13% Castro::swap_state_time_levels() 10 0.002807 0.0037 0.003866 0.11% Castro::post_regrid() 1 0.001443 0.00148 0.001523 0.04% Castro::finalize_do_advance() 10 0.001029 0.001131 0.001233 0.03% Amr::InitAmr() 1 0.0001856 0.0002057 0.0003065 0.01% FabArrayBase::getCPC() 41 0.0001902 0.0002233 0.0002561 0.01% Castro::enforce_speed_limit() 62 0.0002044 0.0002085 0.0002172 0.01% Castro::finalize_advance() 10 0.0001835 0.0001917 0.0002013 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 2.329e-05 0.0001222 0.0001523 0.00% DistributionMapping::LeastUsedCPUs() 1 8.5e-06 0.0001081 0.0001366 0.00% Castro::enforce_consistent_e() 1 7.763e-05 8.849e-05 0.000107 0.00% FabArrayBase::CPC::define() 2 2.567e-05 3.324e-05 5.592e-05 0.00% Gravity::set_mass_offset() 10 3.25e-05 3.653e-05 4.613e-05 0.00% Castro::create_source_corrector() 10 4.121e-05 4.196e-05 4.304e-05 0.00% Gravity::swapTimeLevels() 10 3.546e-05 3.892e-05 4.196e-05 0.00% Castro::retry_advance_ctu() 10 3.484e-05 3.573e-05 3.675e-05 0.00% Castro::FluxRegFineAdd() 10 3.471e-05 3.517e-05 3.558e-05 0.00% Amr::writeSmallPlotFile() 1 1.667e-05 2.569e-05 3.317e-05 0.00% Amr::initSubcycle() 1 5.042e-06 6.995e-06 7.834e-06 0.00% DistributionMapping::Distribute() 1 3.083e-06 3.427e-06 4.083e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-6-g5726371bbb1a) finalized