MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-12-g1404c4a9acc6) initialized Starting run at 06:33:02 UTC on 2022-01-07. Successfully read inputs file ... Castro git describe: 21.12-23-g727e39bb6 AMReX git describe: 22.01-12-g1404c4a9a Microphysics git describe: 22.01-14-geeef682d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015309541 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365904942 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.381542234 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338278667 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.373081939 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.355262228 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.319053604 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311363981 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311075104 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311635608 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311290647 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010661722 seconds Ending run at 06:33:06 UTC on 2022-01-07. Run time = 3.57170105 Run time without initialization = 3.3927145 Average number of zones advanced per microsecond: 0.773 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.571 ... 3.572 ... 3.572 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3071 2.3644 2.4372 68.24% Gravity::make_radial_gravity() 21 0.3434 0.3536 0.364 10.19% MultiFab::min() 10 0.0519 0.127 0.1845 5.17% Castro::initData() 1 0.04208 0.08051 0.1163 3.26% Castro::estTimeStep() 21 0.0175 0.06241 0.1059 2.96% FabArray::setVal() 139 0.06095 0.06551 0.07368 2.06% FabArray::ParallelCopy_finish() 41 0.03559 0.04499 0.06856 1.92% Castro::reset_internal_energy() 63 0.04716 0.04919 0.05154 1.44% Castro::normalize_species() 62 0.04306 0.04422 0.04528 1.27% StateData::FillBoundary(geom) 41 0.04126 0.04345 0.04525 1.27% FabArray::ParallelCopy_nowait() 41 0.03591 0.04097 0.04255 1.19% FillPatchIterator::Initialize 41 0.02758 0.03153 0.03346 0.94% Gravity::interpolate_monopole_grav() 21 0.0282 0.02852 0.02946 0.82% Castro::construct_new_gravity_source() 10 0.02094 0.02317 0.02709 0.76% Castro::do_advance_ctu() 10 0.01731 0.02046 0.02332 0.65% Castro::computeTemp() 63 0.01765 0.018 0.01887 0.53% Castro::expand_state() 10 0.0121 0.0171 0.01872 0.52% Castro::initialize_do_advance() 10 0.0123 0.01615 0.01761 0.49% VisMF::Write(FabArray) 2 0.01334 0.01391 0.01611 0.45% MultiFab::Saxpy() 20 0.01214 0.01342 0.01408 0.39% Amr::writePlotFile() 2 0.01008 0.01201 0.01281 0.36% Castro::initialize_advance() 10 0.004943 0.009767 0.0125 0.35% MultiFab::contains_nan() 20 0.00999 0.01099 0.01233 0.35% Gravity::get_new_grav_vector() 11 0.009143 0.01078 0.01219 0.34% Castro::construct_old_gravity_source() 10 0.007419 0.01015 0.01105 0.31% FabArray::setDomainBndry() 41 0.006725 0.009786 0.01086 0.30% Gravity::get_old_grav_vector() 10 0.007333 0.008817 0.009636 0.27% Amr::defBaseLevel() 1 0.006996 0.007172 0.008212 0.23% Castro::enforce_min_density() 62 0.006483 0.006884 0.007176 0.20% Castro::construct_new_source() 50 0.006277 0.006415 0.006582 0.18% StateData::define() 4 0.004517 0.004607 0.004964 0.14% main() 1 0.003724 0.003992 0.00422 0.12% Castro::swap_state_time_levels() 10 0.0026 0.003465 0.003712 0.10% Amr::coarseTimeStep() 10 0.0006095 0.0009229 0.001695 0.05% Castro::finalize_do_advance() 10 0.0005527 0.001145 0.001362 0.04% Castro::clean_state() 62 0.001038 0.001072 0.001107 0.03% Amr::timeStep() 10 0.0002758 0.0003235 0.0006064 0.02% FabArray::ParallelCopy() 41 0.0004294 0.0004385 0.0004543 0.01% FillPatchSingleLevel 41 0.0004169 0.00043 0.000444 0.01% Amr::InitAmr() 1 0.0001787 0.0002112 0.000391 0.01% StateDataPhysBCFunct::() 41 0.0003429 0.0003581 0.0003895 0.01% Castro::do_old_sources() 10 0.0003276 0.0003559 0.0003783 0.01% Castro::do_new_sources() 10 0.0003336 0.000355 0.0003707 0.01% Castro::construct_old_source() 50 0.0002388 0.0002659 0.0002848 0.01% DistributionMapping::LeastUsedCPUs() 1 1.921e-05 0.0002295 0.0002603 0.01% Castro::enforce_speed_limit() 62 0.000206 0.0002151 0.0002261 0.01% Castro::advance() 10 0.0001793 0.0001848 0.0001912 0.01% FabArrayBase::getCPC() 41 0.0001628 0.0001769 0.0001864 0.01% Castro::apply_source_to_state() 20 0.0001552 0.0001656 0.0001771 0.00% Castro::finalize_advance() 10 0.0001466 0.0001569 0.0001687 0.00% Castro::check_for_nan() 20 0.0001368 0.0001419 0.0001568 0.00% Castro::construct_old_gravity() 10 0.0001329 0.0001437 0.0001559 0.00% Castro::subcycle_advance_ctu() 10 0.0001203 0.0001336 0.0001525 0.00% Castro::construct_new_gravity() 10 0.0001226 0.0001388 0.0001455 0.00% Amr::FinalizeInit() 1 2.525e-05 3.918e-05 0.0001221 0.00% Castro::enforce_consistent_e() 1 7.883e-05 8.638e-05 9.613e-05 0.00% Castro::post_timestep() 10 6.667e-05 6.861e-05 7.292e-05 0.00% Castro::computeNewDt() 9 5.988e-05 6.158e-05 6.384e-05 0.00% Castro::create_source_corrector() 10 4.262e-05 4.551e-05 5.529e-05 0.00% Gravity::set_mass_offset() 10 3.358e-05 3.633e-05 4.879e-05 0.00% FabArrayBase::CPC::define() 2 2.55e-05 3.225e-05 4.525e-05 0.00% Gravity::swapTimeLevels() 10 3.362e-05 3.764e-05 4.283e-05 0.00% Amr::writeSmallPlotFile() 1 1.883e-05 2.134e-05 3.887e-05 0.00% Castro::retry_advance_ctu() 10 3.462e-05 3.665e-05 3.8e-05 0.00% Castro::FluxRegFineAdd() 10 3.571e-05 3.625e-05 3.738e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.942e-05 2.26e-05 2.458e-05 0.00% Amr::initialInit() 1 9.834e-06 1.153e-05 2.133e-05 0.00% Amr::init() 1 1.017e-05 1.182e-05 1.608e-05 0.00% Castro::post_init() 1 1.2e-05 1.443e-05 1.554e-05 0.00% Castro::computeInitialDt() 2 1.35e-05 1.418e-05 1.533e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 9.708e-06 1.189e-05 1.354e-05 0.00% Amr::InitializeInit() 1 6.5e-06 7.964e-06 1.083e-05 0.00% Castro::post_regrid() 1 5.5e-06 8.177e-06 9.876e-06 0.00% Amr::initSubcycle() 1 7.459e-06 7.953e-06 8.583e-06 0.00% DistributionMapping::Distribute() 1 4e-06 4.198e-06 5.084e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.571 3.572 3.572 100.00% Amr::coarseTimeStep() 10 3.378 3.378 3.378 94.57% Amr::timeStep() 10 3.368 3.368 3.369 94.32% Castro::advance() 10 3.351 3.352 3.352 93.84% Castro::subcycle_advance_ctu() 10 3.277 3.284 3.29 92.12% Castro::do_advance_ctu() 10 3.277 3.284 3.29 92.11% Castro::construct_ctu_hydro_source() 10 2.307 2.364 2.437 68.24% Gravity::make_radial_gravity() 21 0.3434 0.3536 0.364 10.19% Gravity::get_new_grav_vector() 11 0.2328 0.2346 0.2358 6.60% Castro::construct_old_gravity() 10 0.199 0.2064 0.2156 6.04% Gravity::get_old_grav_vector() 10 0.1981 0.2056 0.2147 6.01% Castro::construct_new_gravity() 10 0.2086 0.2095 0.2106 5.90% MultiFab::min() 10 0.0519 0.127 0.1845 5.17% FillPatchIterator::Initialize 41 0.1636 0.1722 0.184 5.15% Amr::init() 1 0.1784 0.1786 0.1786 5.00% Amr::initialInit() 1 0.1629 0.1634 0.1639 4.59% Castro::initialize_do_advance() 10 0.1542 0.1593 0.1634 4.57% FillPatchSingleLevel 41 0.1202 0.1308 0.1497 4.19% Amr::InitializeInit() 1 0.06095 0.09946 0.1351 3.78% Amr::defBaseLevel() 1 0.06094 0.09945 0.1351 3.78% Castro::clean_state() 62 0.1153 0.1186 0.1231 3.45% Castro::initData() 1 0.04614 0.08459 0.1204 3.37% Castro::expand_state() 10 0.1068 0.1128 0.1165 3.26% Castro::estTimeStep() 21 0.0175 0.06241 0.1059 2.96% FabArray::ParallelCopy() 41 0.07735 0.08661 0.1051 2.94% Amr::FinalizeInit() 1 0.02803 0.06395 0.1027 2.88% Castro::computeInitialDt() 2 0.001653 0.03723 0.07578 2.12% Castro::initialize_advance() 10 0.06045 0.06724 0.07377 2.07% FabArray::setVal() 139 0.06095 0.06551 0.07368 2.06% Castro::do_new_sources() 10 0.05828 0.06269 0.07069 1.98% Castro::computeTemp() 63 0.06482 0.06718 0.07041 1.97% FabArray::ParallelCopy_finish() 41 0.03559 0.04499 0.06856 1.92% Castro::reset_internal_energy() 63 0.04716 0.04919 0.05154 1.44% Castro::do_old_sources() 10 0.04076 0.04526 0.04631 1.30% StateDataPhysBCFunct::() 41 0.04162 0.04381 0.04559 1.28% Castro::normalize_species() 62 0.04306 0.04422 0.04528 1.27% StateData::FillBoundary(geom) 41 0.04126 0.04345 0.04525 1.27% FabArray::ParallelCopy_nowait() 41 0.03613 0.04118 0.04276 1.20% Castro::construct_new_source() 50 0.02722 0.02958 0.03367 0.94% Gravity::interpolate_monopole_grav() 21 0.0282 0.02852 0.02946 0.82% Castro::construct_new_gravity_source() 10 0.02094 0.02317 0.02709 0.76% Castro::post_init() 1 0.02582 0.02622 0.02669 0.75% Amr::writePlotFile() 2 0.02544 0.02592 0.02628 0.74% Castro::post_timestep() 10 0.01628 0.01654 0.01701 0.48% VisMF::Write(FabArray) 2 0.01334 0.01391 0.01611 0.45% Castro::apply_source_to_state() 20 0.0123 0.01359 0.01425 0.40% MultiFab::Saxpy() 20 0.01214 0.01342 0.01408 0.39% Castro::check_for_nan() 20 0.01013 0.01114 0.01247 0.35% MultiFab::contains_nan() 20 0.00999 0.01099 0.01233 0.35% Castro::construct_old_source() 50 0.007658 0.01042 0.01133 0.32% Castro::construct_old_gravity_source() 10 0.007419 0.01015 0.01105 0.31% FabArray::setDomainBndry() 41 0.006725 0.009786 0.01086 0.30% Castro::computeNewDt() 9 0.006543 0.007609 0.008177 0.23% Castro::enforce_min_density() 62 0.006483 0.006884 0.007176 0.20% AmrLevel::AmrLevel(dm) 1 0.004541 0.00463 0.004988 0.14% StateData::define() 4 0.004517 0.004607 0.004964 0.14% Castro::swap_state_time_levels() 10 0.0026 0.003465 0.003712 0.10% Castro::post_regrid() 1 0.001389 0.001431 0.001481 0.04% Castro::finalize_do_advance() 10 0.0005527 0.001145 0.001362 0.04% Amr::InitAmr() 1 0.0001869 0.0002192 0.0003991 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 3.783e-05 0.0002456 0.000277 0.01% DistributionMapping::LeastUsedCPUs() 1 1.921e-05 0.0002295 0.0002603 0.01% Castro::enforce_speed_limit() 62 0.000206 0.0002151 0.0002261 0.01% FabArrayBase::getCPC() 41 0.0001909 0.0002092 0.0002224 0.01% Castro::finalize_advance() 10 0.000184 0.0001931 0.000205 0.01% Castro::enforce_consistent_e() 1 7.883e-05 8.638e-05 9.613e-05 0.00% Castro::create_source_corrector() 10 4.262e-05 4.551e-05 5.529e-05 0.00% Gravity::set_mass_offset() 10 3.358e-05 3.633e-05 4.879e-05 0.00% FabArrayBase::CPC::define() 2 2.55e-05 3.225e-05 4.525e-05 0.00% Gravity::swapTimeLevels() 10 3.362e-05 3.764e-05 4.283e-05 0.00% Amr::writeSmallPlotFile() 1 1.883e-05 2.134e-05 3.887e-05 0.00% Castro::retry_advance_ctu() 10 3.462e-05 3.665e-05 3.8e-05 0.00% Castro::FluxRegFineAdd() 10 3.571e-05 3.625e-05 3.738e-05 0.00% Amr::initSubcycle() 1 7.459e-06 7.953e-06 8.583e-06 0.00% DistributionMapping::Distribute() 1 4e-06 4.198e-06 5.084e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-12-g1404c4a9acc6) finalized