MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-13-g0278677bbc8c) initialized Starting run at 06:33:18 UTC on 2022-01-10. Successfully read inputs file ... Castro git describe: 21.12-23-g727e39bb6 AMReX git describe: 22.01-13-g0278677bb Microphysics git describe: 22.01-14-geeef682d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014257034 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359772621 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.340928354 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333821232 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332982311 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354464342 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.327293698 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310874861 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309630979 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311284738 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310592651 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010245137 seconds Ending run at 06:33:21 UTC on 2022-01-10. Run time = 3.483169079 Run time without initialization = 3.30607152 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.483 ... 3.483 ... 3.483 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3169 2.3400 2.3677 67.97% Gravity::make_radial_gravity() 21 0.3409 0.3521 0.3681 10.57% Castro::initData() 1 0.04157 0.08041 0.1159 3.33% Castro::estTimeStep() 21 0.01688 0.0589 0.09178 2.63% FabArray::setVal() 139 0.06637 0.07417 0.08224 2.36% MultiFab::min() 10 0.01367 0.04536 0.07166 2.06% Castro::reset_internal_energy() 63 0.04802 0.04954 0.05133 1.47% FabArray::ParallelCopy_finish() 41 0.03812 0.04534 0.0502 1.44% StateData::FillBoundary(geom) 41 0.04153 0.04351 0.04731 1.36% Castro::normalize_species() 62 0.04292 0.04378 0.04489 1.29% FabArray::ParallelCopy_nowait() 41 0.04066 0.04239 0.04475 1.28% FillPatchIterator::Initialize 41 0.02718 0.03271 0.03516 1.01% Gravity::interpolate_monopole_grav() 21 0.02804 0.02837 0.02882 0.83% Castro::construct_new_gravity_source() 10 0.02152 0.02402 0.02709 0.78% Castro::do_advance_ctu() 10 0.01766 0.02109 0.02451 0.70% Castro::expand_state() 10 0.01572 0.01906 0.02097 0.60% Castro::initialize_do_advance() 10 0.01559 0.01773 0.01933 0.56% Castro::computeTemp() 63 0.01753 0.01804 0.0186 0.53% MultiFab::Saxpy() 20 0.01389 0.01474 0.01531 0.44% VisMF::Write(FabArray) 2 0.01233 0.01296 0.01514 0.43% Gravity::get_new_grav_vector() 11 0.01032 0.01178 0.01428 0.41% Castro::initialize_advance() 10 0.009888 0.01185 0.0138 0.40% FabArray::setDomainBndry() 41 0.00834 0.01084 0.01307 0.38% Amr::writePlotFile() 2 0.009571 0.01179 0.01255 0.36% MultiFab::contains_nan() 20 0.01009 0.01123 0.01216 0.35% Castro::construct_old_gravity_source() 10 0.01043 0.01091 0.01126 0.32% Gravity::get_old_grav_vector() 10 0.008477 0.009162 0.009726 0.28% Amr::defBaseLevel() 1 0.006954 0.007163 0.008232 0.24% Castro::enforce_min_density() 62 0.006724 0.007004 0.007409 0.21% Castro::construct_new_source() 50 0.006527 0.006696 0.006871 0.20% StateData::define() 4 0.004418 0.004585 0.004987 0.14% main() 1 0.003882 0.004091 0.004212 0.12% Castro::swap_state_time_levels() 10 0.0028 0.003714 0.003881 0.11% Castro::finalize_do_advance() 10 0.001243 0.001346 0.001434 0.04% Castro::clean_state() 62 0.00103 0.001055 0.001077 0.03% Amr::coarseTimeStep() 10 0.0004365 0.0007122 0.001034 0.03% Amr::timeStep() 10 0.0002623 0.0003134 0.0005101 0.01% FillPatchSingleLevel 41 0.0004226 0.0004393 0.0004775 0.01% FabArray::ParallelCopy() 41 0.0004248 0.0004374 0.0004541 0.01% StateDataPhysBCFunct::() 41 0.0003479 0.0003603 0.0003772 0.01% Castro::do_new_sources() 10 0.000336 0.0003565 0.0003734 0.01% Castro::do_old_sources() 10 0.0003346 0.0003545 0.0003688 0.01% Amr::InitAmr() 1 0.0001775 0.0002063 0.00032 0.01% Castro::construct_old_source() 50 0.0002539 0.0002711 0.0002963 0.01% Castro::enforce_speed_limit() 62 0.0002058 0.0002088 0.000215 0.01% Castro::advance() 10 0.0001728 0.0001803 0.0001936 0.01% FabArrayBase::getCPC() 41 0.0001708 0.0001803 0.000191 0.01% Castro::finalize_advance() 10 0.0001643 0.000171 0.0001842 0.01% Castro::apply_source_to_state() 20 0.0001586 0.0001635 0.0001715 0.00% Castro::check_for_nan() 20 0.0001351 0.0001405 0.0001575 0.00% Castro::subcycle_advance_ctu() 10 0.0001189 0.0001307 0.0001575 0.00% Castro::construct_old_gravity() 10 0.0001388 0.0001467 0.0001564 0.00% DistributionMapping::LeastUsedCPUs() 1 7.042e-06 0.0001276 0.0001548 0.00% Castro::construct_new_gravity() 10 0.0001204 0.0001305 0.0001474 0.00% Amr::FinalizeInit() 1 2.433e-05 3.925e-05 0.0001346 0.00% Castro::enforce_consistent_e() 1 7.521e-05 8.286e-05 8.783e-05 0.00% Castro::post_timestep() 10 6.242e-05 6.977e-05 8.125e-05 0.00% Castro::computeNewDt() 9 5.742e-05 5.986e-05 6.213e-05 0.00% Castro::create_source_corrector() 10 4.033e-05 4.481e-05 5.8e-05 0.00% Castro::FluxRegFineAdd() 10 3.667e-05 3.951e-05 5.359e-05 0.00% Gravity::swapTimeLevels() 10 3.462e-05 3.754e-05 3.942e-05 0.00% Castro::retry_advance_ctu() 10 3.496e-05 3.672e-05 3.767e-05 0.00% Gravity::set_mass_offset() 10 3.258e-05 3.436e-05 3.663e-05 0.00% FabArrayBase::CPC::define() 2 2.837e-05 3.046e-05 3.617e-05 0.00% Amr::writeSmallPlotFile() 1 1.592e-05 2.423e-05 3.383e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.938e-05 2.168e-05 2.633e-05 0.00% Castro::post_init() 1 1.213e-05 1.558e-05 1.771e-05 0.00% Castro::computeInitialDt() 2 1.283e-05 1.336e-05 1.387e-05 0.00% Amr::init() 1 9.918e-06 1.104e-05 1.213e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 8.832e-06 1.071e-05 1.192e-05 0.00% Amr::InitializeInit() 1 6.208e-06 7.474e-06 1.175e-05 0.00% Amr::initialInit() 1 8.583e-06 9.89e-06 1.092e-05 0.00% Castro::post_regrid() 1 8.167e-06 8.771e-06 9.75e-06 0.00% Amr::initSubcycle() 1 7.167e-06 7.552e-06 8.583e-06 0.00% DistributionMapping::Distribute() 1 2.583e-06 3.187e-06 4.25e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.483 3.483 3.483 100.00% Amr::coarseTimeStep() 10 3.292 3.292 3.292 94.50% Amr::timeStep() 10 3.283 3.284 3.284 94.28% Castro::advance() 10 3.267 3.267 3.267 93.80% Castro::subcycle_advance_ctu() 10 3.184 3.192 3.196 91.76% Castro::do_advance_ctu() 10 3.184 3.191 3.196 91.76% Castro::construct_ctu_hydro_source() 10 2.317 2.34 2.368 67.97% Gravity::make_radial_gravity() 21 0.3409 0.3521 0.3681 10.57% Gravity::get_new_grav_vector() 11 0.2285 0.2311 0.2329 6.69% Castro::construct_old_gravity() 10 0.2024 0.2102 0.2236 6.42% Gravity::get_old_grav_vector() 10 0.2015 0.2092 0.2228 6.40% Castro::construct_new_gravity() 10 0.2049 0.207 0.2083 5.98% FillPatchIterator::Initialize 41 0.1699 0.1762 0.1859 5.34% Amr::init() 1 0.1766 0.1767 0.1768 5.07% Castro::initialize_do_advance() 10 0.1576 0.1665 0.1749 5.02% Amr::initialInit() 1 0.1621 0.1623 0.1624 4.66% FillPatchSingleLevel 41 0.1254 0.1327 0.1393 4.00% Amr::InitializeInit() 1 0.06013 0.09917 0.1349 3.87% Amr::defBaseLevel() 1 0.06012 0.09916 0.1349 3.87% Castro::expand_state() 10 0.1104 0.1176 0.1268 3.64% Castro::clean_state() 62 0.1158 0.1187 0.1214 3.49% Castro::initData() 1 0.04566 0.08445 0.12 3.44% Amr::FinalizeInit() 1 0.02719 0.06311 0.1022 2.93% FabArray::ParallelCopy() 41 0.08149 0.08838 0.09387 2.69% Castro::estTimeStep() 21 0.01688 0.0589 0.09178 2.63% Castro::initialize_advance() 10 0.07047 0.07523 0.08263 2.37% FabArray::setVal() 139 0.06637 0.07417 0.08224 2.36% Castro::computeInitialDt() 2 0.001536 0.03733 0.0764 2.19% Castro::do_new_sources() 10 0.06032 0.06612 0.07232 2.08% MultiFab::min() 10 0.01367 0.04536 0.07166 2.06% Castro::computeTemp() 63 0.06565 0.06759 0.06994 2.01% Castro::reset_internal_energy() 63 0.04802 0.04954 0.05133 1.47% FabArray::ParallelCopy_finish() 41 0.03812 0.04534 0.0502 1.44% Castro::do_old_sources() 10 0.0471 0.04739 0.04781 1.37% StateDataPhysBCFunct::() 41 0.04191 0.04387 0.04766 1.37% StateData::FillBoundary(geom) 41 0.04153 0.04351 0.04731 1.36% FabArray::ParallelCopy_nowait() 41 0.04088 0.0426 0.04496 1.29% Castro::normalize_species() 62 0.04292 0.04378 0.04489 1.29% Castro::construct_new_source() 50 0.02812 0.03071 0.03396 0.97% Gravity::interpolate_monopole_grav() 21 0.02804 0.02837 0.02882 0.83% Castro::construct_new_gravity_source() 10 0.02152 0.02402 0.02709 0.78% Castro::post_init() 1 0.02506 0.02515 0.02531 0.73% Amr::writePlotFile() 2 0.02465 0.02475 0.02488 0.71% Castro::post_timestep() 10 0.01589 0.01608 0.01646 0.47% Castro::apply_source_to_state() 20 0.01405 0.0149 0.01548 0.44% MultiFab::Saxpy() 20 0.01389 0.01474 0.01531 0.44% VisMF::Write(FabArray) 2 0.01233 0.01296 0.01514 0.43% FabArray::setDomainBndry() 41 0.00834 0.01084 0.01307 0.38% Castro::check_for_nan() 20 0.01023 0.01137 0.0123 0.35% MultiFab::contains_nan() 20 0.01009 0.01123 0.01216 0.35% Castro::construct_old_source() 50 0.01069 0.01118 0.01155 0.33% Castro::construct_old_gravity_source() 10 0.01043 0.01091 0.01126 0.32% Castro::enforce_min_density() 62 0.006724 0.007004 0.007409 0.21% Castro::computeNewDt() 9 0.006099 0.006485 0.006857 0.20% AmrLevel::AmrLevel(dm) 1 0.004439 0.004606 0.005008 0.14% StateData::define() 4 0.004418 0.004585 0.004987 0.14% Castro::swap_state_time_levels() 10 0.0028 0.003714 0.003881 0.11% Castro::post_regrid() 1 0.001408 0.001446 0.001474 0.04% Castro::finalize_do_advance() 10 0.001243 0.001346 0.001434 0.04% Amr::InitAmr() 1 0.0001847 0.0002139 0.0003274 0.01% FabArrayBase::getCPC() 41 0.0001999 0.0002108 0.0002232 0.01% Castro::finalize_advance() 10 0.0002013 0.0002105 0.0002216 0.01% Castro::enforce_speed_limit() 62 0.0002058 0.0002088 0.000215 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 2.225e-05 0.0001415 0.0001688 0.00% DistributionMapping::LeastUsedCPUs() 1 7.042e-06 0.0001276 0.0001548 0.00% Castro::enforce_consistent_e() 1 7.521e-05 8.286e-05 8.783e-05 0.00% Castro::create_source_corrector() 10 4.033e-05 4.481e-05 5.8e-05 0.00% Castro::FluxRegFineAdd() 10 3.667e-05 3.951e-05 5.359e-05 0.00% Gravity::swapTimeLevels() 10 3.462e-05 3.754e-05 3.942e-05 0.00% Castro::retry_advance_ctu() 10 3.496e-05 3.672e-05 3.767e-05 0.00% Gravity::set_mass_offset() 10 3.258e-05 3.436e-05 3.663e-05 0.00% FabArrayBase::CPC::define() 2 2.837e-05 3.046e-05 3.617e-05 0.00% Amr::writeSmallPlotFile() 1 1.592e-05 2.423e-05 3.383e-05 0.00% Amr::initSubcycle() 1 7.167e-06 7.552e-06 8.583e-06 0.00% DistributionMapping::Distribute() 1 2.583e-06 3.187e-06 4.25e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-13-g0278677bbc8c) finalized