MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-16-g7314e78fecda) initialized Starting run at 06:33:08 UTC on 2022-01-11. Successfully read inputs file ... Castro git describe: 21.12-23-g727e39bb6 AMReX git describe: 22.01-16-g7314e78fe Microphysics git describe: 22.01-14-geeef682d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014340743 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359624414 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.363447101 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.32903571 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329730172 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354592388 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.325351274 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311702618 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.309746023 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311122239 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311954369 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010150721 seconds Ending run at 06:33:12 UTC on 2022-01-11. Run time = 3.512128592 Run time without initialization = 3.320732355 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.512 ... 3.512 ... 3.512 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2865 2.3376 2.4136 68.72% Gravity::make_radial_gravity() 21 0.3353 0.3462 0.361 10.28% MultiFab::min() 10 0.01687 0.09593 0.149 4.24% Castro::initData() 1 0.0413 0.08308 0.1269 3.61% Castro::estTimeStep() 21 0.02638 0.07076 0.1175 3.35% FabArray::ParallelCopy_finish() 41 0.03052 0.04318 0.0754 2.15% FabArray::setVal() 139 0.05747 0.06676 0.07478 2.13% Castro::reset_internal_energy() 63 0.04682 0.04921 0.05141 1.46% StateData::FillBoundary(geom) 41 0.04072 0.0429 0.04607 1.31% Castro::normalize_species() 62 0.04239 0.04387 0.0448 1.28% FabArray::ParallelCopy_nowait() 41 0.03521 0.04014 0.04236 1.21% FillPatchIterator::Initialize 41 0.02575 0.02983 0.03255 0.93% Gravity::interpolate_monopole_grav() 21 0.02792 0.02818 0.02856 0.81% Castro::construct_new_gravity_source() 10 0.02096 0.02288 0.02584 0.74% Castro::do_advance_ctu() 10 0.01715 0.01994 0.02295 0.65% Castro::expand_state() 10 0.01226 0.01755 0.02024 0.58% Castro::computeTemp() 63 0.01741 0.01798 0.01872 0.53% Castro::initialize_do_advance() 10 0.01096 0.01559 0.01669 0.48% VisMF::Write(FabArray) 2 0.01223 0.01322 0.01541 0.44% MultiFab::Saxpy() 20 0.0122 0.01373 0.01466 0.42% Amr::writePlotFile() 2 0.009275 0.01154 0.01271 0.36% Castro::initialize_advance() 10 0.004435 0.01005 0.01265 0.36% Gravity::get_new_grav_vector() 11 0.009035 0.01058 0.01237 0.35% FabArray::setDomainBndry() 41 0.006865 0.009581 0.01196 0.34% MultiFab::contains_nan() 20 0.01014 0.01097 0.01176 0.33% Castro::construct_old_gravity_source() 10 0.007575 0.01032 0.01108 0.32% Amr::defBaseLevel() 1 0.00683 0.007832 0.01018 0.29% Gravity::get_old_grav_vector() 10 0.007141 0.008577 0.009496 0.27% Castro::enforce_min_density() 62 0.006668 0.006952 0.007192 0.20% Castro::construct_new_source() 50 0.005998 0.006495 0.006817 0.19% StateData::define() 4 0.004372 0.004986 0.006339 0.18% main() 1 0.003817 0.004096 0.004299 0.12% Castro::swap_state_time_levels() 10 0.002399 0.003372 0.003714 0.11% Amr::coarseTimeStep() 10 0.0005533 0.0008449 0.001482 0.04% Castro::finalize_do_advance() 10 0.000521 0.001279 0.001478 0.04% Castro::clean_state() 62 0.001042 0.001069 0.001095 0.03% Amr::timeStep() 10 0.0002425 0.0003182 0.0005406 0.02% FabArray::ParallelCopy() 41 0.0004262 0.0004505 0.0004713 0.01% FillPatchSingleLevel 41 0.0004223 0.0004341 0.0004475 0.01% StateDataPhysBCFunct::() 41 0.0003478 0.0003614 0.0003866 0.01% Castro::do_new_sources() 10 0.0003419 0.0003551 0.0003776 0.01% Castro::do_old_sources() 10 0.0003446 0.0003546 0.000368 0.01% Amr::InitAmr() 1 0.0001782 0.0002243 0.000318 0.01% Castro::construct_old_source() 50 0.0002511 0.0002716 0.0002901 0.01% FabArrayBase::getCPC() 41 0.0001715 0.0001918 0.0002294 0.01% Castro::enforce_speed_limit() 62 0.0002052 0.0002101 0.0002218 0.01% Castro::advance() 10 0.0001767 0.0001839 0.0002007 0.01% Castro::apply_source_to_state() 20 0.0001588 0.0001663 0.0001741 0.00% Castro::construct_old_gravity() 10 0.0001443 0.0001552 0.000173 0.00% Castro::finalize_advance() 10 0.000146 0.0001549 0.0001659 0.00% Castro::construct_new_gravity() 10 0.0001227 0.0001407 0.0001555 0.00% Castro::check_for_nan() 20 0.0001366 0.0001428 0.0001526 0.00% Castro::subcycle_advance_ctu() 10 0.0001265 0.0001328 0.0001384 0.00% DistributionMapping::LeastUsedCPUs() 1 7.625e-06 9.088e-05 0.0001345 0.00% Castro::enforce_consistent_e() 1 7.742e-05 8.485e-05 0.0001051 0.00% Amr::FinalizeInit() 1 2.004e-05 3.402e-05 0.0001035 0.00% Castro::computeNewDt() 9 5.691e-05 6.812e-05 8.921e-05 0.00% Castro::post_timestep() 10 6.846e-05 7.154e-05 8.541e-05 0.00% Gravity::swapTimeLevels() 10 3.654e-05 4.307e-05 5.588e-05 0.00% Gravity::set_mass_offset() 10 3.341e-05 3.699e-05 5.196e-05 0.00% Castro::create_source_corrector() 10 3.862e-05 4.327e-05 4.637e-05 0.00% FabArrayBase::CPC::define() 2 2.542e-05 3.21e-05 3.933e-05 0.00% Castro::FluxRegFineAdd() 10 3.675e-05 3.728e-05 3.808e-05 0.00% Castro::retry_advance_ctu() 10 3.438e-05 3.652e-05 3.712e-05 0.00% Amr::writeSmallPlotFile() 1 1.583e-05 2.467e-05 3.35e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.946e-05 2.21e-05 2.787e-05 0.00% Castro::post_init() 1 1.496e-05 1.68e-05 2.258e-05 0.00% Castro::computeInitialDt() 2 1.387e-05 1.476e-05 1.596e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 1.046e-05 1.249e-05 1.413e-05 0.00% Amr::init() 1 1.104e-05 1.161e-05 1.275e-05 0.00% Amr::initialInit() 1 9.167e-06 1.006e-05 1.133e-05 0.00% Amr::InitializeInit() 1 8.25e-06 8.901e-06 1.104e-05 0.00% Amr::initSubcycle() 1 7.542e-06 8.725e-06 1.046e-05 0.00% Castro::post_regrid() 1 6.459e-06 8.146e-06 9.668e-06 0.00% DistributionMapping::Distribute() 1 2.75e-06 3.146e-06 3.833e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.512 3.512 3.512 100.00% Amr::coarseTimeStep() 10 3.306 3.306 3.306 94.14% Amr::timeStep() 10 3.297 3.298 3.298 93.90% Castro::advance() 10 3.28 3.281 3.281 93.43% Castro::subcycle_advance_ctu() 10 3.206 3.212 3.224 91.80% Castro::do_advance_ctu() 10 3.206 3.212 3.224 91.80% Castro::construct_ctu_hydro_source() 10 2.287 2.338 2.414 68.72% Gravity::make_radial_gravity() 21 0.3353 0.3462 0.361 10.28% Gravity::get_new_grav_vector() 11 0.2245 0.2269 0.2288 6.51% Castro::construct_old_gravity() 10 0.1971 0.2048 0.2172 6.18% Gravity::get_old_grav_vector() 10 0.1962 0.2039 0.2163 6.16% Castro::construct_new_gravity() 10 0.2006 0.2025 0.2037 5.80% Amr::init() 1 0.191 0.191 0.1911 5.44% FillPatchIterator::Initialize 41 0.1563 0.1671 0.1854 5.28% Amr::initialInit() 1 0.1763 0.1765 0.1767 5.03% Castro::initialize_do_advance() 10 0.1505 0.1569 0.1631 4.64% FillPatchSingleLevel 41 0.1204 0.1277 0.1528 4.35% MultiFab::min() 10 0.01687 0.09593 0.149 4.24% Amr::InitializeInit() 1 0.05907 0.102 0.1487 4.23% Amr::defBaseLevel() 1 0.05906 0.102 0.1487 4.23% Castro::initData() 1 0.04525 0.08693 0.1304 3.71% Castro::clean_state() 62 0.1141 0.1183 0.1222 3.48% Castro::expand_state() 10 0.1037 0.1108 0.1179 3.36% Amr::FinalizeInit() 1 0.02758 0.0745 0.1176 3.35% Castro::estTimeStep() 21 0.02638 0.07076 0.1175 3.35% FabArray::ParallelCopy() 41 0.07353 0.08399 0.1113 3.17% Castro::computeInitialDt() 2 0.001575 0.04831 0.09129 2.60% FabArray::ParallelCopy_finish() 41 0.03052 0.04318 0.0754 2.15% Castro::initialize_advance() 10 0.05573 0.06902 0.07496 2.13% FabArray::setVal() 139 0.05747 0.06676 0.07478 2.13% Castro::do_new_sources() 10 0.05866 0.06298 0.07091 2.02% Castro::computeTemp() 63 0.06422 0.06719 0.06999 1.99% Castro::reset_internal_energy() 63 0.04682 0.04921 0.05141 1.46% Castro::do_old_sources() 10 0.04095 0.04558 0.04731 1.35% StateDataPhysBCFunct::() 41 0.04108 0.04327 0.04642 1.32% StateData::FillBoundary(geom) 41 0.04072 0.0429 0.04607 1.31% Castro::normalize_species() 62 0.04239 0.04387 0.0448 1.28% FabArray::ParallelCopy_nowait() 41 0.03544 0.04036 0.04257 1.21% Castro::construct_new_source() 50 0.02745 0.02938 0.0326 0.93% Gravity::interpolate_monopole_grav() 21 0.02792 0.02818 0.02856 0.81% Castro::construct_new_gravity_source() 10 0.02096 0.02288 0.02584 0.74% Castro::post_init() 1 0.02549 0.02561 0.02578 0.73% Amr::writePlotFile() 2 0.02462 0.02476 0.02494 0.71% Castro::post_timestep() 10 0.01616 0.01636 0.01669 0.48% VisMF::Write(FabArray) 2 0.01223 0.01322 0.01541 0.44% Castro::apply_source_to_state() 20 0.01236 0.0139 0.01483 0.42% MultiFab::Saxpy() 20 0.0122 0.01373 0.01466 0.42% FabArray::setDomainBndry() 41 0.006865 0.009581 0.01196 0.34% Castro::check_for_nan() 20 0.01028 0.01112 0.0119 0.34% MultiFab::contains_nan() 20 0.01014 0.01097 0.01176 0.33% Castro::construct_old_source() 50 0.007826 0.01059 0.01136 0.32% Castro::construct_old_gravity_source() 10 0.007575 0.01032 0.01108 0.32% Castro::enforce_min_density() 62 0.006668 0.006952 0.007192 0.20% Castro::computeNewDt() 9 0.006338 0.006765 0.007078 0.20% AmrLevel::AmrLevel(dm) 1 0.004394 0.005008 0.006363 0.18% StateData::define() 4 0.004372 0.004986 0.006339 0.18% Castro::swap_state_time_levels() 10 0.002399 0.003372 0.003714 0.11% Castro::finalize_do_advance() 10 0.000521 0.001279 0.001478 0.04% Castro::post_regrid() 1 0.001399 0.001436 0.001459 0.04% Amr::InitAmr() 1 0.0001864 0.000233 0.0003255 0.01% FabArrayBase::getCPC() 41 0.0002038 0.0002239 0.0002645 0.01% Castro::enforce_speed_limit() 62 0.0002052 0.0002101 0.0002218 0.01% Castro::finalize_advance() 10 0.0001834 0.0001922 0.0002035 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 2.192e-05 0.0001065 0.0001513 0.00% DistributionMapping::LeastUsedCPUs() 1 7.625e-06 9.088e-05 0.0001345 0.00% Castro::enforce_consistent_e() 1 7.742e-05 8.485e-05 0.0001051 0.00% Gravity::swapTimeLevels() 10 3.654e-05 4.307e-05 5.588e-05 0.00% Gravity::set_mass_offset() 10 3.341e-05 3.699e-05 5.196e-05 0.00% Castro::create_source_corrector() 10 3.862e-05 4.327e-05 4.637e-05 0.00% FabArrayBase::CPC::define() 2 2.542e-05 3.21e-05 3.933e-05 0.00% Castro::FluxRegFineAdd() 10 3.675e-05 3.728e-05 3.808e-05 0.00% Castro::retry_advance_ctu() 10 3.438e-05 3.652e-05 3.712e-05 0.00% Amr::writeSmallPlotFile() 1 1.583e-05 2.467e-05 3.35e-05 0.00% Amr::initSubcycle() 1 7.542e-06 8.725e-06 1.046e-05 0.00% DistributionMapping::Distribute() 1 2.75e-06 3.146e-06 3.833e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-16-g7314e78fecda) finalized