MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-18-g405b490356e5) initialized Starting run at 06:33:13 UTC on 2022-01-12. Successfully read inputs file ... Castro git describe: 21.12-23-g727e39bb6 AMReX git describe: 22.01-18-g405b49035 Microphysics git describe: 22.01-14-geeef682d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014852952 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363965622 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344418313 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336900733 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332959837 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353786361 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.326469804 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309944052 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.307319539 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.306821703 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.307148497 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010207927 seconds Ending run at 06:33:17 UTC on 2022-01-12. Run time = 3.483499289 Run time without initialization = 3.304025173 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.483 ... 3.483 ... 3.484 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3135 2.3353 2.3607 67.77% Gravity::make_radial_gravity() 21 0.3441 0.3582 0.3665 10.52% Castro::initData() 1 0.04132 0.0815 0.1158 3.32% Castro::estTimeStep() 21 0.01809 0.0576 0.1053 3.02% FabArray::setVal() 139 0.06741 0.07331 0.08149 2.34% MultiFab::min() 10 0.02457 0.04854 0.06906 1.98% Castro::reset_internal_energy() 63 0.04702 0.04953 0.05146 1.48% FabArray::ParallelCopy_finish() 41 0.03517 0.04255 0.04856 1.39% StateData::FillBoundary(geom) 41 0.04097 0.04344 0.04646 1.33% Castro::normalize_species() 62 0.04238 0.04396 0.04578 1.31% FabArray::ParallelCopy_nowait() 41 0.03978 0.04253 0.04453 1.28% FillPatchIterator::Initialize 41 0.02712 0.03264 0.03493 1.00% Gravity::interpolate_monopole_grav() 21 0.02777 0.02837 0.02924 0.84% Castro::construct_new_gravity_source() 10 0.0213 0.02387 0.02643 0.76% Castro::do_advance_ctu() 10 0.01821 0.02069 0.02403 0.69% Castro::expand_state() 10 0.0143 0.01879 0.02128 0.61% Castro::computeTemp() 63 0.01737 0.01804 0.01949 0.56% Castro::initialize_do_advance() 10 0.0157 0.0175 0.01878 0.54% MultiFab::Saxpy() 20 0.01394 0.01494 0.01567 0.45% VisMF::Write(FabArray) 2 0.01238 0.01301 0.01542 0.44% Gravity::get_new_grav_vector() 11 0.01001 0.01161 0.01424 0.41% Castro::initialize_advance() 10 0.01001 0.01191 0.01383 0.40% Amr::writePlotFile() 2 0.009878 0.01212 0.01283 0.37% MultiFab::contains_nan() 20 0.0106 0.01124 0.01234 0.35% Castro::construct_old_gravity_source() 10 0.01071 0.01115 0.01164 0.33% FabArray::setDomainBndry() 41 0.007508 0.0102 0.01156 0.33% Gravity::get_old_grav_vector() 10 0.008498 0.009174 0.009979 0.29% Amr::defBaseLevel() 1 0.006933 0.007271 0.009321 0.27% Castro::enforce_min_density() 62 0.00682 0.00701 0.007347 0.21% Castro::construct_new_source() 50 0.006501 0.006673 0.006832 0.20% StateData::define() 4 0.004398 0.004584 0.005458 0.16% main() 1 0.003868 0.004101 0.004257 0.12% Castro::swap_state_time_levels() 10 0.002718 0.00367 0.004093 0.12% Castro::finalize_do_advance() 10 0.001292 0.001507 0.001632 0.05% Amr::coarseTimeStep() 10 0.0004791 0.0008329 0.001573 0.05% Castro::clean_state() 62 0.001022 0.001053 0.001101 0.03% Amr::timeStep() 10 0.0002755 0.000319 0.0005293 0.02% FabArray::ParallelCopy() 41 0.0004279 0.0004463 0.0004885 0.01% FillPatchSingleLevel 41 0.0004173 0.0004325 0.0004544 0.01% StateDataPhysBCFunct::() 41 0.0003513 0.000363 0.0003858 0.01% Castro::do_old_sources() 10 0.0003293 0.0003548 0.000383 0.01% Castro::do_new_sources() 10 0.000331 0.0003467 0.0003699 0.01% Amr::InitAmr() 1 0.0001965 0.0002148 0.0003133 0.01% Castro::construct_old_source() 50 0.0002388 0.0002711 0.0002979 0.01% Castro::enforce_speed_limit() 62 0.0002036 0.0002067 0.0002105 0.01% Castro::finalize_advance() 10 0.0001413 0.0001691 0.0001979 0.01% FabArrayBase::getCPC() 41 0.0001766 0.0001817 0.0001934 0.01% Castro::advance() 10 0.0001668 0.0001771 0.0001905 0.01% Castro::apply_source_to_state() 20 0.0001575 0.0001643 0.0001748 0.01% Castro::construct_old_gravity() 10 0.0001361 0.0001411 0.0001473 0.00% Castro::construct_new_gravity() 10 0.0001218 0.0001335 0.0001473 0.00% Castro::check_for_nan() 20 0.0001355 0.0001387 0.0001433 0.00% Amr::FinalizeInit() 1 2.579e-05 4.056e-05 0.0001326 0.00% Castro::subcycle_advance_ctu() 10 0.0001182 0.000124 0.0001309 0.00% DistributionMapping::LeastUsedCPUs() 1 9.166e-06 0.0001013 0.0001171 0.00% Castro::enforce_consistent_e() 1 7.658e-05 8.551e-05 9.258e-05 0.00% Castro::computeNewDt() 9 5.821e-05 6.139e-05 7.383e-05 0.00% Castro::post_timestep() 10 6.413e-05 6.759e-05 7.021e-05 0.00% Castro::FluxRegFineAdd() 10 3.546e-05 4.006e-05 5.279e-05 0.00% Castro::create_source_corrector() 10 4.112e-05 4.326e-05 4.746e-05 0.00% FabArrayBase::CPC::define() 2 2.796e-05 3.364e-05 4.483e-05 0.00% Gravity::swapTimeLevels() 10 3.467e-05 3.8e-05 4.125e-05 0.00% Gravity::set_mass_offset() 10 3.383e-05 3.518e-05 3.717e-05 0.00% Castro::retry_advance_ctu() 10 3.492e-05 3.601e-05 3.709e-05 0.00% Amr::writeSmallPlotFile() 1 1.542e-05 2.388e-05 3.233e-05 0.00% Castro::post_regrid() 1 6.458e-06 1.207e-05 2.738e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.858e-05 2.126e-05 2.492e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 9.166e-06 1.356e-05 1.608e-05 0.00% Castro::post_init() 1 1.342e-05 1.445e-05 1.596e-05 0.00% Castro::computeInitialDt() 2 1.458e-05 1.477e-05 1.492e-05 0.00% Amr::init() 1 9.875e-06 1.113e-05 1.179e-05 0.00% Amr::InitializeInit() 1 8.208e-06 8.672e-06 1.117e-05 0.00% Amr::initialInit() 1 9.749e-06 1.027e-05 1.108e-05 0.00% Amr::initSubcycle() 1 7.25e-06 8.355e-06 8.833e-06 0.00% DistributionMapping::Distribute() 1 2.334e-06 2.745e-06 4e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.483 3.483 3.484 100.00% Amr::coarseTimeStep() 10 3.29 3.29 3.29 94.43% Amr::timeStep() 10 3.28 3.281 3.281 94.19% Castro::advance() 10 3.264 3.264 3.264 93.71% Castro::subcycle_advance_ctu() 10 3.184 3.189 3.193 91.67% Castro::do_advance_ctu() 10 3.184 3.189 3.193 91.66% Castro::construct_ctu_hydro_source() 10 2.313 2.335 2.361 67.77% Gravity::make_radial_gravity() 21 0.3441 0.3582 0.3665 10.52% Gravity::get_new_grav_vector() 11 0.2323 0.2339 0.2356 6.76% Castro::construct_old_gravity() 10 0.2033 0.2129 0.2201 6.32% Gravity::get_old_grav_vector() 10 0.2024 0.212 0.2192 6.29% Castro::construct_new_gravity() 10 0.2062 0.2071 0.2083 5.98% FillPatchIterator::Initialize 41 0.163 0.1728 0.1801 5.17% Amr::init() 1 0.179 0.1791 0.1791 5.14% Castro::initialize_do_advance() 10 0.1531 0.1627 0.1685 4.84% Amr::initialInit() 1 0.164 0.1643 0.1645 4.72% Amr::InitializeInit() 1 0.05976 0.1002 0.1342 3.85% Amr::defBaseLevel() 1 0.05976 0.1002 0.1341 3.85% FillPatchSingleLevel 41 0.1234 0.13 0.134 3.85% Castro::clean_state() 62 0.1141 0.1189 0.1236 3.55% Castro::expand_state() 10 0.1037 0.114 0.1209 3.47% Castro::initData() 1 0.04538 0.08556 0.1199 3.44% Castro::estTimeStep() 21 0.01809 0.0576 0.1053 3.02% Amr::FinalizeInit() 1 0.03007 0.0641 0.1046 3.00% FabArray::ParallelCopy() 41 0.07824 0.08574 0.09137 2.62% FabArray::setVal() 139 0.06741 0.07331 0.08149 2.34% Castro::initialize_advance() 10 0.07058 0.0748 0.07983 2.29% Castro::computeInitialDt() 2 0.001706 0.03568 0.0761 2.18% Castro::do_new_sources() 10 0.05972 0.06592 0.07213 2.07% Castro::computeTemp() 63 0.06443 0.06757 0.07095 2.04% MultiFab::min() 10 0.02457 0.04854 0.06906 1.98% Castro::reset_internal_energy() 63 0.04702 0.04953 0.05146 1.48% FabArray::ParallelCopy_finish() 41 0.03517 0.04255 0.04856 1.39% Castro::do_old_sources() 10 0.04716 0.04772 0.04827 1.39% StateDataPhysBCFunct::() 41 0.04133 0.0438 0.04682 1.34% StateData::FillBoundary(geom) 41 0.04097 0.04344 0.04646 1.33% Castro::normalize_species() 62 0.04238 0.04396 0.04578 1.31% FabArray::ParallelCopy_nowait() 41 0.03999 0.04274 0.04475 1.28% Castro::construct_new_source() 50 0.02781 0.03054 0.03316 0.95% Gravity::interpolate_monopole_grav() 21 0.02777 0.02837 0.02924 0.84% Castro::post_init() 1 0.02756 0.02782 0.02799 0.80% Castro::construct_new_gravity_source() 10 0.0213 0.02387 0.02643 0.76% Amr::writePlotFile() 2 0.02485 0.02513 0.0253 0.73% Castro::post_timestep() 10 0.01558 0.01614 0.01661 0.48% Castro::apply_source_to_state() 20 0.0141 0.0151 0.01584 0.45% MultiFab::Saxpy() 20 0.01394 0.01494 0.01567 0.45% VisMF::Write(FabArray) 2 0.01238 0.01301 0.01542 0.44% Castro::check_for_nan() 20 0.01074 0.01138 0.01248 0.36% MultiFab::contains_nan() 20 0.0106 0.01124 0.01234 0.35% Castro::construct_old_source() 50 0.01095 0.01142 0.01192 0.34% Castro::construct_old_gravity_source() 10 0.01071 0.01115 0.01164 0.33% FabArray::setDomainBndry() 41 0.007508 0.0102 0.01156 0.33% Castro::computeNewDt() 9 0.006373 0.007026 0.007805 0.22% Castro::enforce_min_density() 62 0.00682 0.00701 0.007347 0.21% AmrLevel::AmrLevel(dm) 1 0.00442 0.004605 0.005483 0.16% StateData::define() 4 0.004398 0.004584 0.005458 0.16% Castro::swap_state_time_levels() 10 0.002718 0.00367 0.004093 0.12% Castro::post_regrid() 1 0.001444 0.001521 0.001734 0.05% Castro::finalize_do_advance() 10 0.001292 0.001507 0.001632 0.05% Amr::InitAmr() 1 0.000205 0.0002232 0.0003206 0.01% Castro::finalize_advance() 10 0.0001922 0.0002091 0.0002333 0.01% FabArrayBase::getCPC() 41 0.0002055 0.0002153 0.0002231 0.01% Castro::enforce_speed_limit() 62 0.0002036 0.0002067 0.0002105 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 2.546e-05 0.0001176 0.0001355 0.00% DistributionMapping::LeastUsedCPUs() 1 9.166e-06 0.0001013 0.0001171 0.00% Castro::enforce_consistent_e() 1 7.658e-05 8.551e-05 9.258e-05 0.00% Castro::FluxRegFineAdd() 10 3.546e-05 4.006e-05 5.279e-05 0.00% Castro::create_source_corrector() 10 4.112e-05 4.326e-05 4.746e-05 0.00% FabArrayBase::CPC::define() 2 2.796e-05 3.364e-05 4.483e-05 0.00% Gravity::swapTimeLevels() 10 3.467e-05 3.8e-05 4.125e-05 0.00% Gravity::set_mass_offset() 10 3.383e-05 3.518e-05 3.717e-05 0.00% Castro::retry_advance_ctu() 10 3.492e-05 3.601e-05 3.709e-05 0.00% Amr::writeSmallPlotFile() 1 1.542e-05 2.388e-05 3.233e-05 0.00% Amr::initSubcycle() 1 7.25e-06 8.355e-06 8.833e-06 0.00% DistributionMapping::Distribute() 1 2.334e-06 2.745e-06 4e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-18-g405b490356e5) finalized