MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-26-g65f906216a5e) initialized Starting run at 00:22:18 UTC on 2022-01-14. Successfully read inputs file ... Castro git describe: 21.12-26-g2f2eb254c AMReX git describe: 22.01-26-g65f906216 Microphysics git describe: 22.01-14-geeef682d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013757612 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.345222787 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342895109 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332336972 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332222763 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.352500158 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.329765668 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310368736 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310810697 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310300736 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309308356 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010488844 seconds Ending run at 00:22:21 UTC on 2022-01-14. Run time = 3.494401217 Run time without initialization = 3.2901752 Average number of zones advanced per microsecond: 0.797 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.494 ... 3.494 ... 3.494 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2653 2.3295 2.3786 68.07% Gravity::make_radial_gravity() 21 0.3351 0.3497 0.3625 10.37% Castro::initData() 1 0.04126 0.09174 0.1421 4.07% Castro::estTimeStep() 21 0.02954 0.07773 0.1334 3.82% MultiFab::min() 10 0.005533 0.05893 0.1268 3.63% FabArray::ParallelCopy_finish() 41 0.03183 0.04655 0.08475 2.43% FabArray::setVal() 139 0.05769 0.06732 0.07953 2.28% Castro::reset_internal_energy() 63 0.04701 0.04957 0.05177 1.48% StateData::FillBoundary(geom) 41 0.04124 0.04326 0.04649 1.33% Castro::normalize_species() 62 0.04298 0.04395 0.04549 1.30% FabArray::ParallelCopy_nowait() 41 0.03549 0.0413 0.04312 1.23% FillPatchIterator::Initialize 41 0.02474 0.03074 0.03282 0.94% Gravity::interpolate_monopole_grav() 21 0.02799 0.02839 0.0287 0.82% Castro::construct_new_gravity_source() 10 0.02064 0.02325 0.02677 0.77% Castro::do_advance_ctu() 10 0.01725 0.01989 0.02385 0.68% Castro::expand_state() 10 0.01287 0.01816 0.02009 0.57% Castro::computeTemp() 63 0.01722 0.01777 0.01871 0.54% Castro::initialize_do_advance() 10 0.01075 0.01637 0.01817 0.52% VisMF::Write(FabArray) 2 0.01274 0.01335 0.01544 0.44% MultiFab::Saxpy() 20 0.01222 0.01366 0.01461 0.42% Gravity::get_new_grav_vector() 11 0.008741 0.0111 0.01392 0.40% Castro::initialize_advance() 10 0.004497 0.009851 0.01234 0.35% Amr::writePlotFile() 2 0.009007 0.01123 0.01209 0.35% MultiFab::contains_nan() 20 0.01003 0.01077 0.01183 0.34% Castro::construct_old_gravity_source() 10 0.007591 0.01048 0.01118 0.32% FabArray::setDomainBndry() 41 0.006945 0.009735 0.01077 0.31% Gravity::get_old_grav_vector() 10 0.007355 0.009055 0.01032 0.30% Amr::defBaseLevel() 1 0.006452 0.007633 0.009751 0.28% Castro::enforce_min_density() 62 0.006502 0.006839 0.007205 0.21% Castro::construct_new_source() 50 0.00592 0.006362 0.006623 0.19% StateData::define() 4 0.00429 0.004971 0.006194 0.18% main() 1 0.003876 0.004089 0.004293 0.12% Castro::swap_state_time_levels() 10 0.002226 0.003228 0.003537 0.10% Castro::clean_state() 62 0.001043 0.001063 0.00108 0.03% Castro::finalize_do_advance() 10 0.0004703 0.0008367 0.0009686 0.03% Amr::coarseTimeStep() 10 0.000589 0.0007047 0.000915 0.03% Amr::timeStep() 10 0.0002782 0.0003333 0.0005952 0.02% Amr::InitAmr() 1 0.0002771 0.0003648 0.0004841 0.01% FabArray::ParallelCopy() 41 0.0004351 0.0004467 0.0004579 0.01% FillPatchSingleLevel 41 0.0004189 0.0004293 0.000439 0.01% Castro::do_old_sources() 10 0.0003412 0.0003587 0.0003706 0.01% StateDataPhysBCFunct::() 41 0.0003434 0.0003561 0.0003698 0.01% Castro::do_new_sources() 10 0.0003432 0.0003513 0.0003675 0.01% Castro::construct_old_source() 50 0.0002515 0.0002748 0.0002915 0.01% DistributionMapping::LeastUsedCPUs() 1 1.008e-05 0.0001459 0.000263 0.01% Castro::enforce_speed_limit() 62 0.0002044 0.0002121 0.0002301 0.01% FabArrayBase::getCPC() 41 0.0001713 0.0001878 0.0002037 0.01% Castro::advance() 10 0.000183 0.0001881 0.0001954 0.01% Castro::apply_source_to_state() 20 0.0001528 0.0001674 0.0001827 0.01% Castro::construct_old_gravity() 10 0.0001431 0.0001519 0.0001736 0.00% Castro::construct_new_gravity() 10 0.0001198 0.0001425 0.000168 0.00% Castro::finalize_advance() 10 0.0001485 0.0001559 0.0001668 0.00% Castro::check_for_nan() 20 0.0001373 0.0001401 0.0001441 0.00% Castro::subcycle_advance_ctu() 10 0.000119 0.0001271 0.0001331 0.00% Castro::computeNewDt() 9 6.138e-05 6.823e-05 9.521e-05 0.00% Castro::enforce_consistent_e() 1 8.096e-05 8.52e-05 9.092e-05 0.00% Amr::FinalizeInit() 1 1.338e-05 2.29e-05 7.358e-05 0.00% Castro::post_timestep() 10 6.396e-05 6.643e-05 6.884e-05 0.00% Castro::create_source_corrector() 10 4.046e-05 4.369e-05 4.658e-05 0.00% Amr::writeSmallPlotFile() 1 2.842e-05 3.836e-05 4.475e-05 0.00% Gravity::swapTimeLevels() 10 3.546e-05 3.714e-05 4.108e-05 0.00% FabArrayBase::CPC::define() 2 2.446e-05 3.097e-05 4.05e-05 0.00% Castro::FluxRegFineAdd() 10 3.608e-05 3.667e-05 3.729e-05 0.00% Gravity::set_mass_offset() 10 3.275e-05 3.484e-05 3.641e-05 0.00% Castro::retry_advance_ctu() 10 3.529e-05 3.557e-05 3.612e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.1e-05 2.298e-05 2.758e-05 0.00% Castro::post_regrid() 1 7.041e-06 1.269e-05 2.008e-05 0.00% Amr::initSubcycle() 1 1.175e-05 1.513e-05 1.963e-05 0.00% Castro::computeInitialDt() 2 1.467e-05 1.543e-05 1.858e-05 0.00% DistributionMapping::Distribute() 1 2.5e-06 4.765e-06 1.8e-05 0.00% Amr::init() 1 1e-05 1.177e-05 1.692e-05 0.00% Castro::post_init() 1 1.262e-05 1.414e-05 1.679e-05 0.00% Amr::InitializeInit() 1 6.709e-06 9.104e-06 1.521e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 1.196e-05 1.341e-05 1.479e-05 0.00% Amr::initialInit() 1 9.083e-06 1.035e-05 1.308e-05 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.494 3.494 3.494 100.00% Amr::coarseTimeStep() 10 3.275 3.276 3.276 93.74% Amr::timeStep() 10 3.266 3.267 3.267 93.50% Castro::advance() 10 3.25 3.25 3.25 93.02% Castro::subcycle_advance_ctu() 10 3.172 3.181 3.194 91.41% Castro::do_advance_ctu() 10 3.171 3.18 3.194 91.40% Castro::construct_ctu_hydro_source() 10 2.265 2.33 2.379 68.07% Gravity::make_radial_gravity() 21 0.3351 0.3497 0.3625 10.37% Gravity::get_new_grav_vector() 11 0.227 0.2292 0.2307 6.60% Castro::construct_old_gravity() 10 0.1973 0.2077 0.2174 6.22% Gravity::get_old_grav_vector() 10 0.1963 0.2068 0.2166 6.20% Castro::construct_new_gravity() 10 0.2043 0.2062 0.2072 5.93% Amr::init() 1 0.2035 0.2037 0.2038 5.83% FillPatchIterator::Initialize 41 0.161 0.173 0.1962 5.62% Amr::initialInit() 1 0.1895 0.1896 0.1899 5.43% Castro::initialize_do_advance() 10 0.149 0.1615 0.1668 4.77% FillPatchSingleLevel 41 0.1228 0.1326 0.1646 4.71% Amr::InitializeInit() 1 0.05827 0.1104 0.1633 4.67% Amr::defBaseLevel() 1 0.05826 0.1103 0.1633 4.67% Castro::initData() 1 0.04525 0.09561 0.1457 4.17% Castro::estTimeStep() 21 0.02954 0.07773 0.1334 3.82% Amr::FinalizeInit() 1 0.02632 0.07928 0.1312 3.75% Castro::expand_state() 10 0.1015 0.1147 0.1269 3.63% MultiFab::min() 10 0.005533 0.05893 0.1268 3.63% Castro::clean_state() 62 0.1147 0.1184 0.1231 3.52% FabArray::ParallelCopy() 41 0.07561 0.08851 0.1209 3.46% Castro::computeInitialDt() 2 0.001561 0.05464 0.1068 3.06% FabArray::ParallelCopy_finish() 41 0.03183 0.04655 0.08475 2.43% FabArray::setVal() 139 0.05769 0.06732 0.07953 2.28% Castro::initialize_advance() 10 0.05548 0.06932 0.07841 2.24% Castro::do_new_sources() 10 0.05766 0.06325 0.07123 2.04% Castro::computeTemp() 63 0.06429 0.06734 0.07039 2.01% Castro::reset_internal_energy() 63 0.04701 0.04957 0.05177 1.48% Castro::do_old_sources() 10 0.04081 0.04564 0.04707 1.35% StateDataPhysBCFunct::() 41 0.04159 0.04361 0.04686 1.34% StateData::FillBoundary(geom) 41 0.04124 0.04326 0.04649 1.33% Castro::normalize_species() 62 0.04298 0.04395 0.04549 1.30% FabArray::ParallelCopy_nowait() 41 0.03573 0.04151 0.04333 1.24% Castro::construct_new_source() 50 0.02675 0.02961 0.03339 0.96% Gravity::interpolate_monopole_grav() 21 0.02799 0.02839 0.0287 0.82% Castro::construct_new_gravity_source() 10 0.02064 0.02325 0.02677 0.77% Amr::writePlotFile() 2 0.02444 0.02458 0.02483 0.71% Castro::post_init() 1 0.02376 0.02404 0.0242 0.69% Castro::post_timestep() 10 0.01616 0.01632 0.01663 0.48% VisMF::Write(FabArray) 2 0.01274 0.01335 0.01544 0.44% Castro::apply_source_to_state() 20 0.01239 0.01383 0.01478 0.42% MultiFab::Saxpy() 20 0.01222 0.01366 0.01461 0.42% Castro::check_for_nan() 20 0.01017 0.01091 0.01197 0.34% MultiFab::contains_nan() 20 0.01003 0.01077 0.01183 0.34% Castro::construct_old_source() 50 0.007843 0.01076 0.01146 0.33% Castro::construct_old_gravity_source() 10 0.007591 0.01048 0.01118 0.32% FabArray::setDomainBndry() 41 0.006945 0.009735 0.01077 0.31% Castro::computeNewDt() 9 0.0065 0.006974 0.007554 0.22% Castro::enforce_min_density() 62 0.006502 0.006839 0.007205 0.21% AmrLevel::AmrLevel(dm) 1 0.004311 0.004994 0.006219 0.18% StateData::define() 4 0.00429 0.004971 0.006194 0.18% Castro::swap_state_time_levels() 10 0.002226 0.003228 0.003537 0.10% Castro::post_regrid() 1 0.001393 0.001421 0.00145 0.04% Castro::finalize_do_advance() 10 0.0004703 0.0008367 0.0009686 0.03% Amr::InitAmr() 1 0.0002928 0.0003799 0.0005038 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 2.675e-05 0.0001641 0.0002811 0.01% DistributionMapping::LeastUsedCPUs() 1 1.008e-05 0.0001459 0.000263 0.01% FabArrayBase::getCPC() 41 0.0002034 0.0002187 0.0002442 0.01% Castro::enforce_speed_limit() 62 0.0002044 0.0002121 0.0002301 0.01% Castro::finalize_advance() 10 0.0001858 0.0001926 0.0002031 0.01% Castro::enforce_consistent_e() 1 8.096e-05 8.52e-05 9.092e-05 0.00% Castro::create_source_corrector() 10 4.046e-05 4.369e-05 4.658e-05 0.00% Amr::writeSmallPlotFile() 1 2.842e-05 3.836e-05 4.475e-05 0.00% Gravity::swapTimeLevels() 10 3.546e-05 3.714e-05 4.108e-05 0.00% FabArrayBase::CPC::define() 2 2.446e-05 3.097e-05 4.05e-05 0.00% Castro::FluxRegFineAdd() 10 3.608e-05 3.667e-05 3.729e-05 0.00% Gravity::set_mass_offset() 10 3.275e-05 3.484e-05 3.641e-05 0.00% Castro::retry_advance_ctu() 10 3.529e-05 3.557e-05 3.612e-05 0.00% Amr::initSubcycle() 1 1.175e-05 1.513e-05 1.963e-05 0.00% DistributionMapping::Distribute() 1 2.5e-06 4.765e-06 1.8e-05 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-26-g65f906216a5e) finalized