MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-26-g65f906216a5e) initialized Starting run at 06:32:57 UTC on 2022-01-14. Successfully read inputs file ... Castro git describe: 21.12-25-g169653a90 AMReX git describe: 22.01-26-g65f906216 Microphysics git describe: 22.01-15-gfb7348bf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015539961 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355521208 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342956597 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.326282255 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.3253745 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.348970338 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.324825413 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308869658 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310568334 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308220572 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.306561771 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01025539 seconds Ending run at 06:33:00 UTC on 2022-01-14. Run time = 3.477478027 Run time without initialization = 3.272746325 Average number of zones advanced per microsecond: 0.801 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.477 ... 3.477 ... 3.478 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2689 2.3232 2.3717 68.20% Gravity::make_radial_gravity() 21 0.3375 0.347 0.3574 10.28% Castro::initData() 1 0.04154 0.08285 0.1379 3.97% MultiFab::min() 10 0.01132 0.06331 0.1191 3.42% Castro::estTimeStep() 21 0.01602 0.07997 0.1164 3.35% FabArray::setVal() 139 0.05756 0.06789 0.07567 2.18% FabArray::ParallelCopy_finish() 41 0.03425 0.04459 0.07377 2.12% Castro::reset_internal_energy() 63 0.04827 0.04923 0.05186 1.49% StateData::FillBoundary(geom) 41 0.04069 0.04293 0.04555 1.31% Castro::normalize_species() 62 0.04315 0.04379 0.0446 1.28% FabArray::ParallelCopy_nowait() 41 0.03577 0.04017 0.04221 1.21% FillPatchIterator::Initialize 41 0.02605 0.03006 0.03251 0.93% Gravity::interpolate_monopole_grav() 21 0.02788 0.02842 0.02989 0.86% Castro::construct_new_gravity_source() 10 0.02086 0.02298 0.02587 0.74% Castro::do_advance_ctu() 10 0.01683 0.01977 0.02327 0.67% Castro::expand_state() 10 0.01274 0.01694 0.01944 0.56% Castro::computeTemp() 63 0.0173 0.01778 0.01886 0.54% Castro::initialize_do_advance() 10 0.01129 0.01583 0.01693 0.49% VisMF::Write(FabArray) 2 0.01286 0.01357 0.01586 0.46% MultiFab::Saxpy() 20 0.01239 0.01377 0.01454 0.42% Amr::writePlotFile() 2 0.01015 0.01214 0.01321 0.38% Castro::initialize_advance() 10 0.004472 0.01002 0.01266 0.36% FabArray::setDomainBndry() 41 0.007638 0.01002 0.01214 0.35% Gravity::get_new_grav_vector() 11 0.00876 0.01055 0.01214 0.35% MultiFab::contains_nan() 20 0.01005 0.01061 0.01138 0.33% Castro::construct_old_gravity_source() 10 0.007697 0.0104 0.01108 0.32% Gravity::get_old_grav_vector() 10 0.007469 0.008632 0.00958 0.28% Amr::defBaseLevel() 1 0.006805 0.007242 0.007768 0.22% Castro::enforce_min_density() 62 0.006515 0.00675 0.007045 0.20% Castro::construct_new_source() 50 0.005988 0.0065 0.00678 0.19% StateData::define() 4 0.004411 0.004644 0.004891 0.14% main() 1 0.003775 0.004134 0.004362 0.13% Castro::swap_state_time_levels() 10 0.002396 0.003363 0.003868 0.11% Amr::coarseTimeStep() 10 0.0006144 0.0008215 0.001527 0.04% Castro::finalize_do_advance() 10 0.0005154 0.001202 0.001379 0.04% Castro::clean_state() 62 0.001039 0.001058 0.001081 0.03% Amr::timeStep() 10 0.0002627 0.0003158 0.0005582 0.02% Amr::InitAmr() 1 0.0002734 0.0003167 0.000478 0.01% FabArray::ParallelCopy() 41 0.0004292 0.0004444 0.0004679 0.01% FillPatchSingleLevel 41 0.0004179 0.0004331 0.0004647 0.01% Castro::do_old_sources() 10 0.0003445 0.0003628 0.0003844 0.01% StateDataPhysBCFunct::() 41 0.0003315 0.0003491 0.0003701 0.01% Castro::do_new_sources() 10 0.0003396 0.000349 0.0003631 0.01% Castro::construct_old_source() 50 0.0002545 0.0002766 0.0002997 0.01% DistributionMapping::LeastUsedCPUs() 1 9.583e-06 0.0002293 0.000265 0.01% Castro::enforce_speed_limit() 62 0.0002045 0.0002138 0.000224 0.01% FabArrayBase::getCPC() 41 0.0001716 0.000183 0.0002071 0.01% Castro::advance() 10 0.0001674 0.0001856 0.0002023 0.01% Castro::construct_old_gravity() 10 0.0001395 0.000149 0.000176 0.01% Castro::apply_source_to_state() 20 0.0001588 0.000166 0.0001723 0.00% Castro::subcycle_advance_ctu() 10 0.0001377 0.0001488 0.0001704 0.00% Castro::check_for_nan() 20 0.0001375 0.0001432 0.0001621 0.00% Castro::finalize_advance() 10 0.0001468 0.0001521 0.0001612 0.00% Castro::construct_new_gravity() 10 0.0001178 0.0001313 0.0001429 0.00% Castro::enforce_consistent_e() 1 7.929e-05 9.037e-05 0.0001049 0.00% Amr::FinalizeInit() 1 1.433e-05 2.604e-05 0.000101 0.00% Castro::post_timestep() 10 6.267e-05 7.256e-05 8.146e-05 0.00% Castro::computeNewDt() 9 5.971e-05 6.446e-05 7.713e-05 0.00% Amr::writeSmallPlotFile() 1 3.275e-05 4.125e-05 6.95e-05 0.00% Castro::create_source_corrector() 10 4.283e-05 4.609e-05 4.975e-05 0.00% Gravity::set_mass_offset() 10 3.358e-05 3.621e-05 4.525e-05 0.00% Gravity::swapTimeLevels() 10 3.35e-05 3.738e-05 4.179e-05 0.00% Castro::FluxRegFineAdd() 10 3.571e-05 3.598e-05 3.662e-05 0.00% Castro::retry_advance_ctu() 10 3.483e-05 3.57e-05 3.65e-05 0.00% FabArrayBase::CPC::define() 2 2.617e-05 2.99e-05 3.346e-05 0.00% Amr::init() 1 1.033e-05 1.412e-05 3.154e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.054e-05 2.305e-05 2.442e-05 0.00% Castro::post_init() 1 1.667e-05 2.022e-05 2.404e-05 0.00% Amr::InitializeInit() 1 6.542e-06 9.115e-06 1.637e-05 0.00% Castro::computeInitialDt() 2 1.387e-05 1.463e-05 1.625e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 1.167e-05 1.345e-05 1.4e-05 0.00% Amr::initSubcycle() 1 1.133e-05 1.244e-05 1.321e-05 0.00% Castro::post_regrid() 1 7.791e-06 8.698e-06 1.071e-05 0.00% Amr::initialInit() 1 8.75e-06 9.922e-06 1.025e-05 0.00% DistributionMapping::Distribute() 1 2.5e-06 3.589e-06 4.167e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.477 3.477 3.478 100.00% Amr::coarseTimeStep() 10 3.258 3.258 3.258 93.69% Amr::timeStep() 10 3.249 3.25 3.25 93.46% Castro::advance() 10 3.233 3.233 3.233 92.98% Castro::subcycle_advance_ctu() 10 3.158 3.163 3.175 91.30% Castro::do_advance_ctu() 10 3.158 3.163 3.175 91.30% Castro::construct_ctu_hydro_source() 10 2.269 2.323 2.372 68.20% Gravity::make_radial_gravity() 21 0.3375 0.347 0.3574 10.28% Gravity::get_new_grav_vector() 11 0.2248 0.2263 0.2274 6.54% Castro::construct_old_gravity() 10 0.2014 0.2075 0.2163 6.22% Gravity::get_old_grav_vector() 10 0.2005 0.2066 0.2153 6.19% Amr::init() 1 0.204 0.2042 0.2043 5.87% Castro::construct_new_gravity() 10 0.1974 0.1985 0.1992 5.73% Amr::initialInit() 1 0.1883 0.1888 0.1894 5.45% FillPatchIterator::Initialize 41 0.1569 0.1692 0.188 5.41% Castro::initialize_do_advance() 10 0.1478 0.1574 0.1639 4.71% Amr::InitializeInit() 1 0.05984 0.1016 0.1577 4.53% Amr::defBaseLevel() 1 0.05983 0.1016 0.1576 4.53% FillPatchSingleLevel 41 0.1203 0.1291 0.1532 4.41% Castro::initData() 1 0.04572 0.08689 0.142 4.08% Amr::FinalizeInit() 1 0.03149 0.08718 0.1294 3.72% Castro::clean_state() 62 0.1162 0.1179 0.1225 3.52% Castro::expand_state() 10 0.1003 0.111 0.1206 3.47% MultiFab::min() 10 0.01132 0.06331 0.1191 3.42% Castro::estTimeStep() 21 0.01602 0.07997 0.1164 3.35% FabArray::ParallelCopy() 41 0.07711 0.08541 0.1102 3.17% Castro::computeInitialDt() 2 0.001789 0.05778 0.09962 2.86% FabArray::setVal() 139 0.05756 0.06789 0.07567 2.18% Castro::initialize_advance() 10 0.05708 0.06937 0.07522 2.16% FabArray::ParallelCopy_finish() 41 0.03425 0.04459 0.07377 2.12% Castro::computeTemp() 63 0.06558 0.06701 0.07072 2.03% Castro::do_new_sources() 10 0.05886 0.06303 0.07051 2.03% Castro::reset_internal_energy() 63 0.04827 0.04923 0.05186 1.49% Castro::do_old_sources() 10 0.04138 0.04582 0.04719 1.36% StateDataPhysBCFunct::() 41 0.04107 0.04328 0.0459 1.32% StateData::FillBoundary(geom) 41 0.04069 0.04293 0.04555 1.31% Castro::normalize_species() 62 0.04315 0.04379 0.0446 1.28% FabArray::ParallelCopy_nowait() 41 0.03601 0.04038 0.04243 1.22% Castro::construct_new_source() 50 0.02733 0.02948 0.03254 0.94% Gravity::interpolate_monopole_grav() 21 0.02788 0.02842 0.02989 0.86% Castro::post_init() 1 0.0285 0.02886 0.02941 0.85% Amr::writePlotFile() 2 0.0252 0.02571 0.02607 0.75% Castro::construct_new_gravity_source() 10 0.02086 0.02298 0.02587 0.74% Castro::post_timestep() 10 0.01604 0.01618 0.01642 0.47% VisMF::Write(FabArray) 2 0.01286 0.01357 0.01586 0.46% Castro::apply_source_to_state() 20 0.01255 0.01393 0.01471 0.42% MultiFab::Saxpy() 20 0.01239 0.01377 0.01454 0.42% FabArray::setDomainBndry() 41 0.007638 0.01002 0.01214 0.35% Castro::check_for_nan() 20 0.01019 0.01075 0.01154 0.33% MultiFab::contains_nan() 20 0.01005 0.01061 0.01138 0.33% Castro::construct_old_source() 50 0.007952 0.01068 0.01135 0.33% Castro::construct_old_gravity_source() 10 0.007697 0.0104 0.01108 0.32% Castro::enforce_min_density() 62 0.006515 0.00675 0.007045 0.20% Castro::computeNewDt() 9 0.006289 0.006727 0.007041 0.20% AmrLevel::AmrLevel(dm) 1 0.004436 0.004667 0.004914 0.14% StateData::define() 4 0.004411 0.004644 0.004891 0.14% Castro::swap_state_time_levels() 10 0.002396 0.003363 0.003868 0.11% Castro::post_regrid() 1 0.001414 0.001475 0.001676 0.05% Castro::finalize_do_advance() 10 0.0005154 0.001202 0.001379 0.04% Amr::InitAmr() 1 0.000286 0.0003292 0.0004908 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 2.642e-05 0.0002464 0.0002832 0.01% DistributionMapping::LeastUsedCPUs() 1 9.583e-06 0.0002293 0.000265 0.01% FabArrayBase::getCPC() 41 0.0001995 0.0002129 0.0002405 0.01% Castro::enforce_speed_limit() 62 0.0002045 0.0002138 0.000224 0.01% Castro::finalize_advance() 10 0.0001826 0.0001881 0.0001971 0.01% Castro::enforce_consistent_e() 1 7.929e-05 9.037e-05 0.0001049 0.00% Amr::writeSmallPlotFile() 1 3.275e-05 4.125e-05 6.95e-05 0.00% Castro::create_source_corrector() 10 4.283e-05 4.609e-05 4.975e-05 0.00% Gravity::set_mass_offset() 10 3.358e-05 3.621e-05 4.525e-05 0.00% Gravity::swapTimeLevels() 10 3.35e-05 3.738e-05 4.179e-05 0.00% Castro::FluxRegFineAdd() 10 3.571e-05 3.598e-05 3.662e-05 0.00% Castro::retry_advance_ctu() 10 3.483e-05 3.57e-05 3.65e-05 0.00% FabArrayBase::CPC::define() 2 2.617e-05 2.99e-05 3.346e-05 0.00% Amr::initSubcycle() 1 1.133e-05 1.244e-05 1.321e-05 0.00% DistributionMapping::Distribute() 1 2.5e-06 3.589e-06 4.167e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-26-g65f906216a5e) finalized