MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-26-g65f906216a5e) initialized Starting run at 06:31:58 UTC on 2022-01-17. Successfully read inputs file ... Castro git describe: 21.12-27-g958e0cc7a AMReX git describe: 22.01-26-g65f906216 Microphysics git describe: 22.01-20-g1a290c72 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01368414 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.332846937 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348405363 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.36611128 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.312271434 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.313530701 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.328877718 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.294447541 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.287912016 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.288871281 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.288921638 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009465255 seconds Ending run at 06:32:02 UTC on 2022-01-17. Run time = 3.37226785 Run time without initialization = 3.174040865 Average number of zones advanced per microsecond: 0.826 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.372 ... 3.372 ... 3.372 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1342 2.1832 2.2141 65.66% Gravity::make_radial_gravity() 21 0.3424 0.3545 0.3721 11.03% Castro::estTimeStep() 21 0.02764 0.08433 0.1342 3.98% Castro::initData() 1 0.03773 0.08117 0.1335 3.96% MultiFab::min() 10 0.0455 0.07846 0.1309 3.88% FabArray::setVal() 139 0.06438 0.07022 0.07859 2.33% FabArray::ParallelCopy_finish() 41 0.0357 0.05003 0.07718 2.29% Castro::reset_internal_energy() 63 0.04777 0.04994 0.05318 1.58% StateData::FillBoundary(geom) 41 0.04158 0.043 0.04459 1.32% FabArray::ParallelCopy_nowait() 41 0.03584 0.0427 0.0445 1.32% Castro::normalize_species() 62 0.03227 0.03374 0.03583 1.06% FillPatchIterator::Initialize 41 0.02509 0.03329 0.0353 1.05% Gravity::interpolate_monopole_grav() 21 0.02773 0.02869 0.03061 0.91% Castro::construct_new_gravity_source() 10 0.02225 0.02354 0.02726 0.81% Castro::do_advance_ctu() 10 0.01462 0.01999 0.0232 0.69% Castro::expand_state() 10 0.01129 0.01919 0.02123 0.63% Castro::computeTemp() 63 0.01802 0.01885 0.02012 0.60% Castro::initialize_do_advance() 10 0.01125 0.01686 0.01888 0.56% MultiFab::Saxpy() 20 0.01374 0.01501 0.01586 0.47% VisMF::Write(FabArray) 2 0.01266 0.01313 0.0151 0.45% Castro::initialize_advance() 10 0.01032 0.01159 0.01374 0.41% Gravity::get_new_grav_vector() 11 0.01028 0.01147 0.01331 0.39% Castro::construct_old_gravity_source() 10 0.006967 0.01077 0.01277 0.38% FabArray::setDomainBndry() 41 0.00715 0.01083 0.01183 0.35% MultiFab::contains_nan() 20 0.01037 0.01106 0.0118 0.35% Gravity::get_old_grav_vector() 10 0.00727 0.009666 0.01149 0.34% Amr::writePlotFile() 2 0.008258 0.01065 0.01142 0.34% Amr::defBaseLevel() 1 0.006601 0.007678 0.01083 0.32% Castro::enforce_min_density() 62 0.006601 0.006776 0.00717 0.21% Castro::construct_new_source() 50 0.005754 0.00633 0.00678 0.20% StateData::define() 4 0.004317 0.004879 0.006482 0.19% main() 1 0.003303 0.003677 0.003892 0.12% Castro::swap_state_time_levels() 10 0.002778 0.003526 0.003755 0.11% Amr::coarseTimeStep() 10 0.000297 0.0006709 0.00204 0.06% Castro::finalize_do_advance() 10 0.0004782 0.0007695 0.0009487 0.03% Amr::timeStep() 10 0.0001778 0.0002317 0.0004602 0.01% Amr::InitAmr() 1 0.0002743 0.0003359 0.0004538 0.01% DistributionMapping::LeastUsedCPUs() 1 7.641e-06 0.0001528 0.0002181 0.01% Castro::clean_state() 62 0.0001324 0.0001412 0.0001553 0.00% StateDataPhysBCFunct::() 41 9.726e-05 0.0001178 0.0001365 0.00% Castro::enforce_consistent_e() 1 7.599e-05 8.642e-05 0.0001016 0.00% FabArray::ParallelCopy() 41 5.863e-05 6.63e-05 7.917e-05 0.00% Castro::construct_old_source() 50 4.777e-05 6.603e-05 7.869e-05 0.00% FillPatchSingleLevel 41 5.726e-05 6.379e-05 7.483e-05 0.00% Amr::writeSmallPlotFile() 1 2.63e-05 5.001e-05 6.98e-05 0.00% FabArrayBase::getCPC() 41 3.862e-05 4.692e-05 6.759e-05 0.00% Amr::FinalizeInit() 1 3.707e-06 1.285e-05 6.588e-05 0.00% Castro::subcycle_advance_ctu() 10 3.34e-05 4.282e-05 6.339e-05 0.00% Castro::do_new_sources() 10 5.259e-05 5.792e-05 6.258e-05 0.00% Castro::do_old_sources() 10 4.667e-05 5.365e-05 6.247e-05 0.00% Castro::finalize_advance() 10 5.221e-05 5.462e-05 5.826e-05 0.00% Castro::apply_source_to_state() 20 3.681e-05 4.501e-05 5.641e-05 0.00% Castro::construct_old_gravity() 10 3.814e-05 4.698e-05 5.217e-05 0.00% Castro::construct_new_gravity() 10 4.102e-05 4.464e-05 4.929e-05 0.00% FabArrayBase::CPC::define() 2 2.35e-05 2.853e-05 4.628e-05 0.00% Castro::advance() 10 2.853e-05 3.661e-05 4.21e-05 0.00% Castro::check_for_nan() 20 2.215e-05 2.565e-05 3.311e-05 0.00% Castro::enforce_speed_limit() 62 2.353e-05 2.72e-05 3.153e-05 0.00% Castro::create_source_corrector() 10 1.331e-05 1.586e-05 1.834e-05 0.00% Amr::initSubcycle() 1 8.179e-06 1.047e-05 1.55e-05 0.00% Gravity::swapTimeLevels() 10 1.009e-05 1.254e-05 1.497e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.626e-06 9.991e-06 1.387e-05 0.00% Castro::post_timestep() 10 8.49e-06 1e-05 1.216e-05 0.00% Castro::post_init() 1 3.355e-06 6.331e-06 1.141e-05 0.00% Castro::computeNewDt() 9 7.634e-06 8.626e-06 9.682e-06 0.00% Gravity::set_mass_offset() 10 7.497e-06 7.923e-06 9.2e-06 0.00% Castro::retry_advance_ctu() 10 5.454e-06 6.551e-06 8.267e-06 0.00% Castro::FluxRegFineAdd() 10 5.935e-06 6.596e-06 7.714e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.095e-06 5.951e-06 6.916e-06 0.00% Amr::InitializeInit() 1 2.04e-06 2.879e-06 5.597e-06 0.00% Castro::post_regrid() 1 2.093e-06 3.715e-06 5.123e-06 0.00% Castro::computeInitialDt() 2 3.521e-06 4.43e-06 5.025e-06 0.00% Amr::init() 1 2.033e-06 2.46e-06 3.197e-06 0.00% Amr::initialInit() 1 1.204e-06 1.519e-06 1.816e-06 0.00% DistributionMapping::Distribute() 1 1.029e-06 1.269e-06 1.456e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.372 3.372 3.372 100.00% Amr::coarseTimeStep() 10 3.161 3.161 3.161 93.73% Amr::timeStep() 10 3.15 3.15 3.151 93.44% Castro::advance() 10 3.135 3.135 3.136 92.98% Castro::subcycle_advance_ctu() 10 3.059 3.063 3.065 90.89% Castro::do_advance_ctu() 10 3.059 3.063 3.065 90.89% Castro::construct_ctu_hydro_source() 10 2.134 2.183 2.214 65.66% Gravity::make_radial_gravity() 21 0.3424 0.3545 0.3721 11.03% Castro::construct_old_gravity() 10 0.2129 0.2223 0.2371 7.03% Gravity::get_old_grav_vector() 10 0.2121 0.2215 0.2365 7.01% Gravity::get_new_grav_vector() 11 0.2233 0.225 0.2263 6.71% Castro::construct_new_gravity() 10 0.1993 0.2008 0.2016 5.98% Amr::init() 1 0.1976 0.1977 0.1978 5.87% FillPatchIterator::Initialize 41 0.1703 0.1802 0.1892 5.61% Amr::initialInit() 1 0.183 0.1835 0.184 5.46% Castro::initialize_do_advance() 10 0.1487 0.158 0.1609 4.77% FillPatchSingleLevel 41 0.1242 0.136 0.157 4.66% Amr::InitializeInit() 1 0.0551 0.09992 0.156 4.63% Amr::defBaseLevel() 1 0.0551 0.09992 0.156 4.63% Castro::initData() 1 0.04144 0.08498 0.1371 4.07% Castro::estTimeStep() 21 0.02764 0.08433 0.1342 3.98% MultiFab::min() 10 0.0455 0.07846 0.1309 3.88% Amr::FinalizeInit() 1 0.02765 0.08356 0.1281 3.80% Castro::clean_state() 62 0.1043 0.1086 0.1153 3.42% Castro::expand_state() 10 0.1086 0.1124 0.1141 3.38% FabArray::ParallelCopy() 41 0.08032 0.09287 0.1132 3.36% Castro::computeInitialDt() 2 0.001864 0.0581 0.103 3.05% FabArray::setVal() 139 0.06438 0.07022 0.07859 2.33% FabArray::ParallelCopy_finish() 41 0.0357 0.05003 0.07718 2.29% Castro::initialize_advance() 10 0.07009 0.07194 0.0765 2.27% Castro::computeTemp() 63 0.06579 0.06879 0.0733 2.17% Castro::do_new_sources() 10 0.05787 0.0612 0.06915 2.05% Castro::do_old_sources() 10 0.04242 0.04651 0.05379 1.60% Castro::reset_internal_energy() 63 0.04777 0.04994 0.05318 1.58% StateDataPhysBCFunct::() 41 0.04172 0.04312 0.04471 1.33% StateData::FillBoundary(geom) 41 0.04158 0.043 0.04459 1.32% FabArray::ParallelCopy_nowait() 41 0.03596 0.04277 0.04456 1.32% Castro::normalize_species() 62 0.03227 0.03374 0.03583 1.06% Castro::construct_new_source() 50 0.02859 0.02987 0.03404 1.01% Gravity::interpolate_monopole_grav() 21 0.02773 0.02869 0.03061 0.91% Castro::construct_new_gravity_source() 10 0.02225 0.02354 0.02726 0.81% Castro::post_init() 1 0.0247 0.02509 0.02553 0.76% Amr::writePlotFile() 2 0.02336 0.02378 0.02416 0.72% Castro::post_timestep() 10 0.01389 0.01469 0.01597 0.47% Castro::apply_source_to_state() 20 0.01379 0.01506 0.0159 0.47% MultiFab::Saxpy() 20 0.01374 0.01501 0.01586 0.47% VisMF::Write(FabArray) 2 0.01266 0.01313 0.0151 0.45% Castro::construct_old_source() 50 0.007015 0.01084 0.01284 0.38% Castro::construct_old_gravity_source() 10 0.006967 0.01077 0.01277 0.38% FabArray::setDomainBndry() 41 0.00715 0.01083 0.01183 0.35% Castro::check_for_nan() 20 0.01041 0.01109 0.01183 0.35% MultiFab::contains_nan() 20 0.01037 0.01106 0.0118 0.35% Castro::computeNewDt() 9 0.007276 0.008717 0.009517 0.28% Castro::enforce_min_density() 62 0.006601 0.006776 0.00717 0.21% AmrLevel::AmrLevel(dm) 1 0.004326 0.004889 0.006495 0.19% StateData::define() 4 0.004317 0.004879 0.006482 0.19% Castro::swap_state_time_levels() 10 0.002778 0.003526 0.003755 0.11% Castro::post_regrid() 1 0.001414 0.001453 0.001503 0.04% Castro::finalize_do_advance() 10 0.0004782 0.0007695 0.0009487 0.03% Amr::InitAmr() 1 0.0002829 0.0003464 0.000469 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.431e-05 0.00016 0.000226 0.01% DistributionMapping::LeastUsedCPUs() 1 7.641e-06 0.0001528 0.0002181 0.01% FabArrayBase::getCPC() 41 6.477e-05 7.546e-05 0.0001139 0.00% Castro::enforce_consistent_e() 1 7.599e-05 8.642e-05 0.0001016 0.00% Amr::writeSmallPlotFile() 1 2.63e-05 5.001e-05 6.98e-05 0.00% Castro::finalize_advance() 10 5.817e-05 6.122e-05 6.521e-05 0.00% FabArrayBase::CPC::define() 2 2.35e-05 2.853e-05 4.628e-05 0.00% Castro::enforce_speed_limit() 62 2.353e-05 2.72e-05 3.153e-05 0.00% Castro::create_source_corrector() 10 1.331e-05 1.586e-05 1.834e-05 0.00% Amr::initSubcycle() 1 8.179e-06 1.047e-05 1.55e-05 0.00% Gravity::swapTimeLevels() 10 1.009e-05 1.254e-05 1.497e-05 0.00% Gravity::set_mass_offset() 10 7.497e-06 7.923e-06 9.2e-06 0.00% Castro::retry_advance_ctu() 10 5.454e-06 6.551e-06 8.267e-06 0.00% Castro::FluxRegFineAdd() 10 5.935e-06 6.596e-06 7.714e-06 0.00% DistributionMapping::Distribute() 1 1.029e-06 1.269e-06 1.456e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-26-g65f906216a5e) finalized