MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-29-g812836f08a75) initialized Starting run at 06:32:05 UTC on 2022-01-18. Successfully read inputs file ... Castro git describe: 21.12-27-g958e0cc7a AMReX git describe: 22.01-29-g812836f08 Microphysics git describe: 22.01-20-g1a290c72 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012631398 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.331670625 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.329757999 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.313228409 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.310902107 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.31276878 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.335253287 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.296816704 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.293624239 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.293810366 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.294439391 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009582464 seconds Ending run at 06:32:08 UTC on 2022-01-18. Run time = 3.329491226 Run time without initialization = 3.124870366 Average number of zones advanced per microsecond: 0.839 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.329 ... 3.329 ... 3.33 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0927 2.1856 2.2137 66.49% Gravity::make_radial_gravity() 21 0.3329 0.34 0.3603 10.82% MultiFab::min() 10 0.03762 0.06787 0.1643 4.94% Castro::initData() 1 0.03761 0.08465 0.1407 4.23% Castro::estTimeStep() 21 0.02229 0.08252 0.1277 3.84% FabArray::ParallelCopy_finish() 41 0.03214 0.04302 0.08181 2.46% FabArray::setVal() 139 0.05877 0.06844 0.07331 2.20% Castro::reset_internal_energy() 63 0.0493 0.05014 0.05197 1.56% StateData::FillBoundary(geom) 41 0.03729 0.04142 0.04373 1.31% FabArray::ParallelCopy_nowait() 41 0.03309 0.04028 0.04256 1.28% Castro::normalize_species() 62 0.03205 0.03314 0.03405 1.02% FillPatchIterator::Initialize 41 0.02265 0.0301 0.03261 0.98% Gravity::interpolate_monopole_grav() 21 0.02744 0.02809 0.02842 0.85% Castro::construct_new_gravity_source() 10 0.02023 0.02315 0.02548 0.77% Castro::do_advance_ctu() 10 0.0146 0.01977 0.02344 0.70% Castro::expand_state() 10 0.01196 0.01874 0.02093 0.63% Castro::computeTemp() 63 0.01809 0.01894 0.01957 0.59% Castro::initialize_do_advance() 10 0.009956 0.01613 0.01791 0.54% MultiFab::Saxpy() 20 0.01253 0.01462 0.01569 0.47% VisMF::Write(FabArray) 2 0.01106 0.01225 0.01437 0.43% Castro::initialize_advance() 10 0.007879 0.0112 0.01331 0.40% Gravity::get_new_grav_vector() 11 0.009857 0.01122 0.01275 0.38% Castro::construct_old_gravity_source() 10 0.006965 0.01076 0.01162 0.35% Amr::writePlotFile() 2 0.008058 0.01023 0.0116 0.35% MultiFab::contains_nan() 20 0.01001 0.01088 0.01142 0.34% FabArray::setDomainBndry() 41 0.006668 0.01005 0.0114 0.34% Amr::defBaseLevel() 1 0.006612 0.008033 0.0112 0.34% Gravity::get_old_grav_vector() 10 0.006685 0.00907 0.01029 0.31% Castro::enforce_min_density() 62 0.006288 0.006741 0.007312 0.22% StateData::define() 4 0.004316 0.0051 0.007029 0.21% Castro::construct_new_source() 50 0.005624 0.006392 0.006618 0.20% Castro::swap_state_time_levels() 10 0.002447 0.003448 0.003753 0.11% main() 1 0.003175 0.003443 0.003715 0.11% Amr::coarseTimeStep() 10 0.0004453 0.0006787 0.001524 0.05% Castro::finalize_do_advance() 10 0.0004018 0.0009939 0.001232 0.04% Amr::InitAmr() 1 0.0002822 0.0003734 0.0005279 0.02% Amr::timeStep() 10 0.0001875 0.000239 0.0004915 0.01% DistributionMapping::LeastUsedCPUs() 1 6.838e-06 0.0002013 0.0003009 0.01% Castro::clean_state() 62 0.0001332 0.0001414 0.0001531 0.00% StateDataPhysBCFunct::() 41 0.0001069 0.0001185 0.0001265 0.00% Castro::enforce_consistent_e() 1 8.47e-05 9.422e-05 0.000105 0.00% Amr::FinalizeInit() 1 4.209e-06 1.669e-05 9.376e-05 0.00% Castro::construct_old_source() 50 4.076e-05 6.688e-05 8.278e-05 0.00% Castro::do_new_sources() 10 4.748e-05 5.907e-05 7.67e-05 0.00% Amr::writeSmallPlotFile() 1 3.126e-05 5.016e-05 7.078e-05 0.00% FillPatchSingleLevel 41 5.443e-05 6.331e-05 6.992e-05 0.00% Castro::subcycle_advance_ctu() 10 3.665e-05 4.536e-05 6.781e-05 0.00% FabArray::ParallelCopy() 41 5.872e-05 6.277e-05 6.639e-05 0.00% FabArrayBase::getCPC() 41 3.693e-05 4.8e-05 6.574e-05 0.00% Castro::do_old_sources() 10 4.039e-05 5.4e-05 6.222e-05 0.00% Castro::construct_old_gravity() 10 4.339e-05 5.129e-05 5.819e-05 0.00% Castro::finalize_advance() 10 4.954e-05 5.229e-05 5.522e-05 0.00% Castro::apply_source_to_state() 20 3.607e-05 4.598e-05 5.188e-05 0.00% Castro::construct_new_gravity() 10 3.857e-05 4.4e-05 5.047e-05 0.00% Castro::advance() 10 3.226e-05 3.722e-05 4.313e-05 0.00% Castro::enforce_speed_limit() 62 2.353e-05 2.743e-05 3.742e-05 0.00% FabArrayBase::CPC::define() 2 2.296e-05 2.593e-05 3.016e-05 0.00% Castro::check_for_nan() 20 2.138e-05 2.47e-05 2.733e-05 0.00% Castro::create_source_corrector() 10 1.156e-05 1.584e-05 1.793e-05 0.00% Amr::initSubcycle() 1 8.32e-06 1.108e-05 1.782e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.19e-06 9.272e-06 1.511e-05 0.00% Gravity::swapTimeLevels() 10 9.817e-06 1.21e-05 1.444e-05 0.00% Castro::post_init() 1 3.726e-06 5.893e-06 1.194e-05 0.00% Castro::post_timestep() 10 8.948e-06 9.874e-06 1.076e-05 0.00% Castro::computeNewDt() 9 7.192e-06 8.324e-06 9.779e-06 0.00% Gravity::set_mass_offset() 10 7.051e-06 7.655e-06 9.021e-06 0.00% Castro::FluxRegFineAdd() 10 5.121e-06 6.048e-06 6.742e-06 0.00% Castro::retry_advance_ctu() 10 5.43e-06 6.024e-06 6.709e-06 0.00% Castro::post_regrid() 1 2.404e-06 4.612e-06 6.6e-06 0.00% Amr::InitializeInit() 1 1.987e-06 2.939e-06 6.244e-06 0.00% Castro::computeInitialDt() 2 3.372e-06 4.327e-06 5.97e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.119e-06 4.811e-06 5.957e-06 0.00% Amr::init() 1 1.858e-06 2.413e-06 2.942e-06 0.00% Amr::initialInit() 1 1.33e-06 1.634e-06 1.99e-06 0.00% DistributionMapping::Distribute() 1 9.75e-07 1.183e-06 1.564e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.329 3.329 3.33 100.00% Amr::coarseTimeStep() 10 3.112 3.112 3.112 93.46% Amr::timeStep() 10 3.102 3.103 3.103 93.21% Castro::advance() 10 3.087 3.088 3.088 92.74% Castro::subcycle_advance_ctu() 10 3.014 3.017 3.028 90.94% Castro::do_advance_ctu() 10 3.014 3.017 3.028 90.94% Castro::construct_ctu_hydro_source() 10 2.093 2.186 2.214 66.49% Gravity::make_radial_gravity() 21 0.3329 0.34 0.3603 10.82% Gravity::get_new_grav_vector() 11 0.2195 0.2211 0.2224 6.68% Castro::construct_old_gravity() 10 0.198 0.204 0.2205 6.62% Gravity::get_old_grav_vector() 10 0.1972 0.2032 0.2198 6.60% Amr::init() 1 0.2039 0.2041 0.2042 6.13% Castro::construct_new_gravity() 10 0.1964 0.1973 0.198 5.95% Amr::initialInit() 1 0.1909 0.1913 0.1914 5.75% FillPatchIterator::Initialize 41 0.1586 0.1652 0.1851 5.56% MultiFab::min() 10 0.03762 0.06787 0.1643 4.94% Amr::InitializeInit() 1 0.05482 0.1037 0.1641 4.93% Amr::defBaseLevel() 1 0.05482 0.1037 0.1641 4.93% Castro::initialize_do_advance() 10 0.1488 0.1538 0.1577 4.74% FillPatchSingleLevel 41 0.117 0.125 0.1558 4.68% Castro::initData() 1 0.0415 0.08848 0.1444 4.34% Amr::FinalizeInit() 1 0.02708 0.08752 0.1366 4.10% Castro::estTimeStep() 21 0.02229 0.08252 0.1277 3.84% FabArray::ParallelCopy() 41 0.07482 0.08344 0.115 3.46% Castro::expand_state() 10 0.1038 0.109 0.1148 3.45% Castro::computeInitialDt() 2 0.001656 0.06223 0.1112 3.34% Castro::clean_state() 62 0.1055 0.1081 0.1103 3.31% FabArray::ParallelCopy_finish() 41 0.03214 0.04302 0.08181 2.46% Castro::initialize_advance() 10 0.05919 0.07024 0.07335 2.20% FabArray::setVal() 139 0.05877 0.06844 0.07331 2.20% Castro::computeTemp() 63 0.0678 0.06909 0.07154 2.15% Castro::do_new_sources() 10 0.05568 0.06121 0.06512 1.96% Castro::reset_internal_energy() 63 0.0493 0.05014 0.05197 1.56% Castro::do_old_sources() 10 0.03849 0.0454 0.04684 1.41% StateDataPhysBCFunct::() 41 0.03742 0.04154 0.04386 1.32% StateData::FillBoundary(geom) 41 0.03729 0.04142 0.04373 1.31% FabArray::ParallelCopy_nowait() 41 0.03318 0.04035 0.04262 1.28% Castro::normalize_species() 62 0.03205 0.03314 0.03405 1.02% Castro::construct_new_source() 50 0.02586 0.02954 0.03197 0.96% Gravity::interpolate_monopole_grav() 21 0.02744 0.02809 0.02842 0.85% Castro::construct_new_gravity_source() 10 0.02023 0.02315 0.02548 0.77% Castro::post_init() 1 0.02449 0.02466 0.02489 0.75% Amr::writePlotFile() 2 0.02235 0.02248 0.02266 0.68% Castro::apply_source_to_state() 20 0.01257 0.01467 0.01574 0.47% MultiFab::Saxpy() 20 0.01253 0.01462 0.01569 0.47% Castro::post_timestep() 10 0.01435 0.01463 0.01532 0.46% VisMF::Write(FabArray) 2 0.01106 0.01225 0.01437 0.43% Castro::construct_old_source() 50 0.007005 0.01083 0.0117 0.35% Castro::construct_old_gravity_source() 10 0.006965 0.01076 0.01162 0.35% Castro::check_for_nan() 20 0.01003 0.01091 0.01144 0.34% MultiFab::contains_nan() 20 0.01001 0.01088 0.01142 0.34% FabArray::setDomainBndry() 41 0.006668 0.01005 0.0114 0.34% Castro::computeNewDt() 9 0.006739 0.007503 0.008535 0.26% Castro::enforce_min_density() 62 0.006288 0.006741 0.007312 0.22% AmrLevel::AmrLevel(dm) 1 0.004324 0.005109 0.00704 0.21% StateData::define() 4 0.004316 0.0051 0.007029 0.21% Castro::swap_state_time_levels() 10 0.002447 0.003448 0.003753 0.11% Castro::post_regrid() 1 0.001456 0.001546 0.001618 0.05% Castro::finalize_do_advance() 10 0.0004018 0.0009939 0.001232 0.04% Amr::InitAmr() 1 0.0002914 0.0003845 0.0005457 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.311e-05 0.0002073 0.0003079 0.01% DistributionMapping::LeastUsedCPUs() 1 6.838e-06 0.0002013 0.0003009 0.01% Castro::enforce_consistent_e() 1 8.47e-05 9.422e-05 0.000105 0.00% FabArrayBase::getCPC() 41 6.206e-05 7.393e-05 9.046e-05 0.00% Amr::writeSmallPlotFile() 1 3.126e-05 5.016e-05 7.078e-05 0.00% Castro::finalize_advance() 10 5.586e-05 5.834e-05 6.034e-05 0.00% Castro::enforce_speed_limit() 62 2.353e-05 2.743e-05 3.742e-05 0.00% FabArrayBase::CPC::define() 2 2.296e-05 2.593e-05 3.016e-05 0.00% Castro::create_source_corrector() 10 1.156e-05 1.584e-05 1.793e-05 0.00% Amr::initSubcycle() 1 8.32e-06 1.108e-05 1.782e-05 0.00% Gravity::swapTimeLevels() 10 9.817e-06 1.21e-05 1.444e-05 0.00% Gravity::set_mass_offset() 10 7.051e-06 7.655e-06 9.021e-06 0.00% Castro::FluxRegFineAdd() 10 5.121e-06 6.048e-06 6.742e-06 0.00% Castro::retry_advance_ctu() 10 5.43e-06 6.024e-06 6.709e-06 0.00% DistributionMapping::Distribute() 1 9.75e-07 1.183e-06 1.564e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-29-g812836f08a75) finalized