MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-38-g3a2a74fc4b38) initialized Starting run at 06:31:15 UTC on 2022-01-24. Successfully read inputs file ... Castro git describe: 21.12-27-g958e0cc7a AMReX git describe: 22.01-38-g3a2a74fc4 Microphysics git describe: 22.01-20-g1a290c72 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014467731 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.334097401 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.323927099 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.313835326 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.311370431 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.309005538 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.334851207 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.294906086 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.289242883 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.289458585 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.287619127 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.052721832 seconds Ending run at 06:31:19 UTC on 2022-01-24. Run time = 3.379963372 Run time without initialization = 3.144983531 Average number of zones advanced per microsecond: 0.834 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.379 ... 3.38 ... 3.38 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1099 2.1670 2.2077 65.32% Gravity::make_radial_gravity() 21 0.3403 0.3552 0.3798 11.24% Castro::initData() 1 0.03807 0.08839 0.1548 4.58% Castro::estTimeStep() 21 0.02575 0.09533 0.1505 4.45% MultiFab::min() 10 0.01274 0.05742 0.1179 3.49% FabArray::ParallelCopy_finish() 41 0.03327 0.04312 0.07874 2.33% FabArray::setVal() 139 0.05952 0.06847 0.0744 2.20% Amr::writePlotFile() 2 0.05252 0.05593 0.05701 1.69% Castro::reset_internal_energy() 63 0.0483 0.05015 0.05244 1.55% StateData::FillBoundary(geom) 41 0.03818 0.0416 0.04499 1.33% FabArray::ParallelCopy_nowait() 41 0.03434 0.04084 0.0434 1.28% Castro::normalize_species() 62 0.03203 0.03337 0.03477 1.03% FillPatchIterator::Initialize 41 0.02315 0.03074 0.03346 0.99% Gravity::interpolate_monopole_grav() 21 0.02763 0.02803 0.02857 0.85% Castro::construct_new_gravity_source() 10 0.02061 0.02349 0.02613 0.77% Castro::do_advance_ctu() 10 0.01379 0.01942 0.02377 0.70% Castro::expand_state() 10 0.01041 0.01833 0.02183 0.65% Castro::computeTemp() 63 0.01852 0.01907 0.01961 0.58% Castro::initialize_do_advance() 10 0.01034 0.01625 0.01855 0.55% MultiFab::Saxpy() 20 0.01273 0.01475 0.01601 0.47% VisMF::Write(FabArray) 2 0.01184 0.01242 0.0149 0.44% Castro::initialize_advance() 10 0.008558 0.01143 0.0136 0.40% Gravity::get_new_grav_vector() 11 0.009499 0.01121 0.01356 0.40% MultiFab::contains_nan() 20 0.01013 0.01098 0.01227 0.36% Castro::construct_old_gravity_source() 10 0.00737 0.01094 0.012 0.36% FabArray::setDomainBndry() 41 0.00685 0.01016 0.01142 0.34% Gravity::get_old_grav_vector() 10 0.006703 0.009118 0.01042 0.31% Amr::defBaseLevel() 1 0.006591 0.007834 0.01038 0.31% Castro::construct_new_source() 50 0.005848 0.006381 0.006706 0.20% StateData::define() 4 0.004254 0.004946 0.006433 0.19% Castro::enforce_min_density() 62 0.005635 0.006054 0.006339 0.19% Castro::swap_state_time_levels() 10 0.002469 0.003519 0.004166 0.12% main() 1 0.003408 0.003847 0.004152 0.12% Amr::coarseTimeStep() 10 0.0003004 0.000803 0.001411 0.04% Castro::finalize_do_advance() 10 0.0004707 0.0009551 0.001213 0.04% Amr::InitAmr() 1 0.0002744 0.0003396 0.0005835 0.02% Amr::timeStep() 10 0.0001704 0.0002219 0.0004393 0.01% DistributionMapping::LeastUsedCPUs() 1 9.063e-06 0.0002891 0.0003638 0.01% Castro::clean_state() 62 0.0001288 0.000144 0.0001645 0.00% Castro::enforce_consistent_e() 1 7.685e-05 0.0001001 0.0001426 0.00% StateDataPhysBCFunct::() 41 9.63e-05 0.00011 0.0001234 0.00% Castro::construct_old_source() 50 6.466e-05 8.082e-05 8.899e-05 0.00% FabArray::ParallelCopy() 41 6.114e-05 6.904e-05 7.859e-05 0.00% FillPatchSingleLevel 41 6.721e-05 7.247e-05 7.647e-05 0.00% Castro::do_old_sources() 10 5.469e-05 6.206e-05 7.558e-05 0.00% Castro::do_new_sources() 10 5.911e-05 6.329e-05 7.344e-05 0.00% Amr::writeSmallPlotFile() 1 4.286e-05 6.305e-05 7.309e-05 0.00% Castro::enforce_speed_limit() 62 2.62e-05 3.334e-05 7.093e-05 0.00% Castro::construct_old_gravity() 10 4.76e-05 5.502e-05 6.949e-05 0.00% Amr::FinalizeInit() 1 4e-06 1.262e-05 6.927e-05 0.00% Castro::apply_source_to_state() 20 4.277e-05 5.208e-05 6.495e-05 0.00% Castro::finalize_advance() 10 4.85e-05 5.309e-05 6.369e-05 0.00% Castro::subcycle_advance_ctu() 10 3.954e-05 4.966e-05 6.109e-05 0.00% Castro::advance() 10 3.434e-05 3.991e-05 5.791e-05 0.00% FabArrayBase::getCPC() 41 4.569e-05 5.046e-05 5.543e-05 0.00% Castro::construct_new_gravity() 10 4.127e-05 4.766e-05 5.414e-05 0.00% FabArrayBase::CPC::define() 2 2.316e-05 2.759e-05 3.223e-05 0.00% Castro::check_for_nan() 20 2.271e-05 2.557e-05 2.972e-05 0.00% Gravity::swapTimeLevels() 10 1.294e-05 1.639e-05 2.636e-05 0.00% Castro::create_source_corrector() 10 1.46e-05 1.624e-05 1.963e-05 0.00% Amr::initSubcycle() 1 8.379e-06 1.063e-05 1.509e-05 0.00% Castro::post_init() 1 2.608e-06 5.899e-06 1.487e-05 0.00% Castro::computeNewDt() 9 6.926e-06 8.779e-06 1.426e-05 0.00% AmrLevel::AmrLevel(dm) 1 6.978e-06 9.391e-06 1.248e-05 0.00% Castro::post_timestep() 10 7.831e-06 9.254e-06 1.05e-05 0.00% Amr::InitializeInit() 1 1.906e-06 3.223e-06 9.407e-06 0.00% Gravity::set_mass_offset() 10 7.381e-06 8.316e-06 9.143e-06 0.00% Castro::FluxRegFineAdd() 10 5.33e-06 6.33e-06 8.024e-06 0.00% Castro::retry_advance_ctu() 10 4.964e-06 5.912e-06 6.933e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.518e-06 4.358e-06 5.754e-06 0.00% Castro::post_regrid() 1 2.146e-06 3.043e-06 4.922e-06 0.00% Castro::computeInitialDt() 2 2.756e-06 3.571e-06 4.444e-06 0.00% Amr::init() 1 1.801e-06 2.338e-06 2.893e-06 0.00% Amr::initialInit() 1 1.012e-06 1.469e-06 1.676e-06 0.00% DistributionMapping::Distribute() 1 9.06e-07 1.18e-06 1.519e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.379 3.38 3.38 100.00% Amr::coarseTimeStep() 10 3.088 3.088 3.088 91.37% Amr::timeStep() 10 3.078 3.078 3.079 91.10% Castro::advance() 10 3.063 3.064 3.064 90.65% Castro::subcycle_advance_ctu() 10 2.989 2.992 3.002 88.81% Castro::do_advance_ctu() 10 2.989 2.992 3.002 88.81% Castro::construct_ctu_hydro_source() 10 2.11 2.167 2.208 65.32% Gravity::make_radial_gravity() 21 0.3403 0.3552 0.3798 11.24% Gravity::get_new_grav_vector() 11 0.2357 0.2375 0.2386 7.06% Amr::init() 1 0.2342 0.2345 0.2346 6.94% Castro::construct_old_gravity() 10 0.193 0.2046 0.2253 6.67% Gravity::get_old_grav_vector() 10 0.1921 0.2038 0.2247 6.65% Amr::initialInit() 1 0.2183 0.2189 0.2197 6.50% Castro::construct_new_gravity() 10 0.1994 0.2008 0.2018 5.97% FillPatchIterator::Initialize 41 0.1589 0.1668 0.1816 5.37% Amr::InitializeInit() 1 0.05506 0.1074 0.1784 5.28% Amr::defBaseLevel() 1 0.05505 0.1074 0.1784 5.28% Amr::FinalizeInit() 1 0.04131 0.1115 0.1633 4.83% Castro::initData() 1 0.04182 0.09246 0.1598 4.73% Castro::initialize_do_advance() 10 0.1457 0.1529 0.1581 4.68% FillPatchSingleLevel 41 0.1164 0.1259 0.1516 4.49% Castro::estTimeStep() 21 0.02575 0.09533 0.1505 4.45% Castro::computeInitialDt() 2 0.002101 0.07318 0.1256 3.72% MultiFab::min() 10 0.01274 0.05742 0.1179 3.49% FabArray::ParallelCopy() 41 0.07512 0.0841 0.1132 3.35% Castro::expand_state() 10 0.1017 0.1082 0.1131 3.35% Castro::clean_state() 62 0.1038 0.1077 0.1117 3.30% FabArray::ParallelCopy_finish() 41 0.03327 0.04312 0.07874 2.33% Castro::initialize_advance() 10 0.06121 0.07102 0.0744 2.20% FabArray::setVal() 139 0.05952 0.06847 0.0744 2.20% Castro::computeTemp() 63 0.06687 0.06922 0.07201 2.13% Amr::writePlotFile() 2 0.06742 0.06835 0.06905 2.04% Castro::do_new_sources() 10 0.05661 0.06112 0.06576 1.95% Castro::reset_internal_energy() 63 0.0483 0.05015 0.05244 1.55% Castro::do_old_sources() 10 0.03934 0.04546 0.04672 1.38% StateDataPhysBCFunct::() 41 0.03829 0.04171 0.0451 1.33% StateData::FillBoundary(geom) 41 0.03818 0.0416 0.04499 1.33% FabArray::ParallelCopy_nowait() 41 0.03442 0.04092 0.04349 1.29% Castro::post_init() 1 0.03726 0.03764 0.03787 1.12% Castro::normalize_species() 62 0.03203 0.03337 0.03477 1.03% Castro::construct_new_source() 50 0.02646 0.02987 0.03284 0.97% Gravity::interpolate_monopole_grav() 21 0.02763 0.02803 0.02857 0.85% Castro::construct_new_gravity_source() 10 0.02061 0.02349 0.02613 0.77% Castro::apply_source_to_state() 20 0.01278 0.01481 0.01607 0.48% MultiFab::Saxpy() 20 0.01273 0.01475 0.01601 0.47% Castro::post_timestep() 10 0.01412 0.01452 0.01556 0.46% VisMF::Write(FabArray) 2 0.01184 0.01242 0.0149 0.44% Castro::check_for_nan() 20 0.01015 0.011 0.0123 0.36% MultiFab::contains_nan() 20 0.01013 0.01098 0.01227 0.36% Castro::construct_old_source() 50 0.007435 0.01102 0.01209 0.36% Castro::construct_old_gravity_source() 10 0.00737 0.01094 0.012 0.36% FabArray::setDomainBndry() 41 0.00685 0.01016 0.01142 0.34% Castro::computeNewDt() 9 0.00704 0.008038 0.008757 0.26% AmrLevel::AmrLevel(dm) 1 0.004262 0.004955 0.006444 0.19% StateData::define() 4 0.004254 0.004946 0.006433 0.19% Castro::enforce_min_density() 62 0.005635 0.006054 0.006339 0.19% Castro::swap_state_time_levels() 10 0.002469 0.003519 0.004166 0.12% Castro::post_regrid() 1 0.001412 0.001723 0.002549 0.08% Castro::finalize_do_advance() 10 0.0004707 0.0009551 0.001213 0.04% Amr::InitAmr() 1 0.0002829 0.0003502 0.0005986 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.473e-05 0.0002947 0.0003709 0.01% DistributionMapping::LeastUsedCPUs() 1 9.063e-06 0.0002891 0.0003638 0.01% Castro::enforce_consistent_e() 1 7.685e-05 0.0001001 0.0001426 0.00% FabArrayBase::getCPC() 41 7.056e-05 7.805e-05 8.391e-05 0.00% Amr::writeSmallPlotFile() 1 4.286e-05 6.305e-05 7.309e-05 0.00% Castro::enforce_speed_limit() 62 2.62e-05 3.334e-05 7.093e-05 0.00% Castro::finalize_advance() 10 5.452e-05 5.942e-05 7.018e-05 0.00% FabArrayBase::CPC::define() 2 2.316e-05 2.759e-05 3.223e-05 0.00% Gravity::swapTimeLevels() 10 1.294e-05 1.639e-05 2.636e-05 0.00% Castro::create_source_corrector() 10 1.46e-05 1.624e-05 1.963e-05 0.00% Amr::initSubcycle() 1 8.379e-06 1.063e-05 1.509e-05 0.00% Gravity::set_mass_offset() 10 7.381e-06 8.316e-06 9.143e-06 0.00% Castro::FluxRegFineAdd() 10 5.33e-06 6.33e-06 8.024e-06 0.00% Castro::retry_advance_ctu() 10 4.964e-06 5.912e-06 6.933e-06 0.00% DistributionMapping::Distribute() 1 9.06e-07 1.18e-06 1.519e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-38-g3a2a74fc4b38) finalized