MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.01-39-g874ccc6f3f8d) initialized Starting run at 06:31:10 UTC on 2022-01-26. Successfully read inputs file ... Castro git describe: 21.12-27-g958e0cc7a AMReX git describe: 22.01-39-g874ccc6f3 Microphysics git describe: 22.01-20-g1a290c72 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017356185 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.338551513 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.327147649 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.315159367 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.313584913 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.312129837 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33523789 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.29676373 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.291904601 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.292806327 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.291082805 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.053589334 seconds Ending run at 06:31:13 UTC on 2022-01-26. Run time = 3.384158232 Run time without initialization = 3.170937982 Average number of zones advanced per microsecond: 0.827 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.383 ... 3.384 ... 3.384 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1336 2.1851 2.2217 65.65% Gravity::make_radial_gravity() 21 0.3405 0.3542 0.3641 10.76% Castro::initData() 1 0.04017 0.08864 0.1376 4.07% Castro::estTimeStep() 21 0.01775 0.07175 0.1169 3.46% MultiFab::min() 10 0.01381 0.05588 0.1106 3.27% FabArray::setVal() 139 0.06722 0.07135 0.0752 2.22% FabArray::ParallelCopy_finish() 41 0.03504 0.04265 0.06015 1.78% Amr::writePlotFile() 2 0.05507 0.05713 0.05873 1.74% Castro::reset_internal_energy() 63 0.04846 0.05042 0.0529 1.56% StateData::FillBoundary(geom) 41 0.03947 0.04247 0.04734 1.40% FabArray::ParallelCopy_nowait() 41 0.03758 0.04131 0.04376 1.29% FillPatchIterator::Initialize 41 0.02451 0.03164 0.0346 1.02% Castro::normalize_species() 62 0.03245 0.03343 0.03446 1.02% Gravity::interpolate_monopole_grav() 21 0.02803 0.02851 0.02908 0.86% Castro::construct_new_gravity_source() 10 0.02207 0.02375 0.02586 0.76% Castro::do_advance_ctu() 10 0.01782 0.02028 0.02407 0.71% Castro::expand_state() 10 0.01158 0.01848 0.0208 0.61% Castro::computeTemp() 63 0.01805 0.01915 0.01988 0.59% Castro::initialize_do_advance() 10 0.01121 0.01653 0.01814 0.54% MultiFab::Saxpy() 20 0.0146 0.01565 0.01629 0.48% VisMF::Write(FabArray) 2 0.01149 0.01239 0.01608 0.48% Castro::initialize_advance() 10 0.01053 0.01258 0.01462 0.43% MultiFab::contains_nan() 20 0.01039 0.01155 0.01281 0.38% Gravity::get_new_grav_vector() 11 0.01085 0.01141 0.01243 0.37% Castro::construct_old_gravity_source() 10 0.007471 0.01111 0.01213 0.36% FabArray::setDomainBndry() 41 0.006903 0.01032 0.01198 0.35% Gravity::get_old_grav_vector() 10 0.008142 0.009252 0.01051 0.31% Amr::defBaseLevel() 1 0.006608 0.007825 0.01042 0.31% Castro::construct_new_source() 50 0.006018 0.00652 0.00681 0.20% StateData::define() 4 0.004299 0.004984 0.006492 0.19% Castro::enforce_min_density() 62 0.006081 0.006221 0.006449 0.19% Castro::swap_state_time_levels() 10 0.0029 0.003994 0.005469 0.16% main() 1 0.003456 0.003877 0.004166 0.12% Amr::coarseTimeStep() 10 0.0003161 0.0007448 0.002188 0.06% Castro::finalize_do_advance() 10 0.0004637 0.0009006 0.001087 0.03% Amr::InitAmr() 1 0.0002852 0.0003428 0.0004559 0.01% Amr::timeStep() 10 0.0001709 0.0002292 0.0004452 0.01% DistributionMapping::LeastUsedCPUs() 1 7.368e-06 0.0001447 0.0002101 0.01% Castro::clean_state() 62 0.000126 0.0001358 0.0001495 0.00% Castro::enforce_consistent_e() 1 8.47e-05 0.000102 0.0001349 0.00% StateDataPhysBCFunct::() 41 9.96e-05 0.0001163 0.0001294 0.00% Castro::construct_old_source() 50 4.791e-05 7.247e-05 9.742e-05 0.00% Amr::FinalizeInit() 1 4.254e-06 1.417e-05 7.644e-05 0.00% FillPatchSingleLevel 41 6.104e-05 6.824e-05 7.392e-05 0.00% Castro::finalize_advance() 10 5.214e-05 5.781e-05 7.252e-05 0.00% FabArray::ParallelCopy() 41 5.742e-05 6.185e-05 6.981e-05 0.00% Amr::writeSmallPlotFile() 1 2.597e-05 5.571e-05 6.858e-05 0.00% Castro::subcycle_advance_ctu() 10 3.677e-05 4.587e-05 6.814e-05 0.00% Castro::do_old_sources() 10 4.252e-05 5.544e-05 6.55e-05 0.00% Castro::do_new_sources() 10 4.987e-05 5.815e-05 6.416e-05 0.00% FabArrayBase::getCPC() 41 3.897e-05 4.854e-05 6.063e-05 0.00% Castro::construct_old_gravity() 10 3.991e-05 5.034e-05 5.62e-05 0.00% Castro::apply_source_to_state() 20 3.407e-05 4.515e-05 5.572e-05 0.00% Castro::construct_new_gravity() 10 3.988e-05 4.472e-05 5.023e-05 0.00% Castro::advance() 10 3.268e-05 3.526e-05 3.729e-05 0.00% FabArrayBase::CPC::define() 2 2.441e-05 2.764e-05 3.209e-05 0.00% Castro::enforce_speed_limit() 62 2.387e-05 2.689e-05 3.012e-05 0.00% Castro::check_for_nan() 20 2.279e-05 2.572e-05 2.834e-05 0.00% Castro::create_source_corrector() 10 1.461e-05 1.704e-05 1.894e-05 0.00% Gravity::swapTimeLevels() 10 1.027e-05 1.421e-05 1.739e-05 0.00% Amr::initSubcycle() 1 8.565e-06 1.066e-05 1.499e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.858e-06 9.743e-06 1.381e-05 0.00% Castro::post_timestep() 10 8.372e-06 9.275e-06 1.123e-05 0.00% Gravity::set_mass_offset() 10 7.282e-06 8.536e-06 1.045e-05 0.00% Castro::computeNewDt() 9 7.451e-06 8.293e-06 9.231e-06 0.00% Castro::retry_advance_ctu() 10 4.224e-06 6.07e-06 9.03e-06 0.00% Castro::post_init() 1 3.319e-06 5.094e-06 8.42e-06 0.00% Amr::InitializeInit() 1 2.254e-06 3.259e-06 7.696e-06 0.00% Castro::FluxRegFineAdd() 10 5.33e-06 6.343e-06 7.255e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.921e-06 4.701e-06 6.345e-06 0.00% Castro::computeInitialDt() 2 3.975e-06 4.849e-06 5.952e-06 0.00% Castro::post_regrid() 1 1.797e-06 3.539e-06 4.942e-06 0.00% Amr::init() 1 2.251e-06 2.572e-06 3.368e-06 0.00% Amr::initialInit() 1 1.419e-06 1.754e-06 1.959e-06 0.00% DistributionMapping::Distribute() 1 9.87e-07 1.16e-06 1.418e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.383 3.384 3.384 100.00% Amr::coarseTimeStep() 10 3.113 3.113 3.113 91.99% Amr::timeStep() 10 3.103 3.103 3.104 91.73% Castro::advance() 10 3.088 3.088 3.089 91.27% Castro::subcycle_advance_ctu() 10 3.01 3.013 3.015 89.10% Castro::do_advance_ctu() 10 3.01 3.013 3.015 89.10% Castro::construct_ctu_hydro_source() 10 2.134 2.185 2.222 65.65% Gravity::make_radial_gravity() 21 0.3405 0.3542 0.3641 10.76% Gravity::get_new_grav_vector() 11 0.2333 0.235 0.2365 6.99% Castro::construct_old_gravity() 10 0.1963 0.2074 0.2176 6.43% Gravity::get_old_grav_vector() 10 0.1954 0.2066 0.2168 6.41% Amr::init() 1 0.2126 0.2127 0.2128 6.29% Castro::construct_new_gravity() 10 0.1974 0.1981 0.1987 5.87% Amr::initialInit() 1 0.1952 0.1969 0.1978 5.84% FillPatchIterator::Initialize 41 0.1615 0.1687 0.1729 5.11% Castro::initialize_do_advance() 10 0.1415 0.155 0.1629 4.81% Amr::InitializeInit() 1 0.05712 0.1077 0.1562 4.62% Amr::defBaseLevel() 1 0.05711 0.1077 0.1562 4.62% Castro::initData() 1 0.04405 0.0928 0.1416 4.18% FillPatchSingleLevel 41 0.12 0.1267 0.1399 4.13% Amr::FinalizeInit() 1 0.04081 0.0892 0.1381 4.08% Castro::estTimeStep() 21 0.01775 0.07175 0.1169 3.46% Castro::expand_state() 10 0.1025 0.1097 0.1161 3.43% Castro::clean_state() 62 0.1059 0.1083 0.1117 3.30% MultiFab::min() 10 0.01381 0.05588 0.1106 3.27% Castro::computeInitialDt() 2 0.002317 0.05081 0.1013 2.99% FabArray::ParallelCopy() 41 0.07779 0.0841 0.09787 2.89% Castro::initialize_advance() 10 0.07314 0.07491 0.07779 2.30% FabArray::setVal() 139 0.06722 0.07135 0.0752 2.22% Castro::computeTemp() 63 0.06705 0.06956 0.07259 2.15% Amr::writePlotFile() 2 0.06848 0.06952 0.07115 2.10% Castro::do_new_sources() 10 0.0596 0.06223 0.0668 1.97% FabArray::ParallelCopy_finish() 41 0.03504 0.04265 0.06015 1.78% Castro::reset_internal_energy() 63 0.04846 0.05042 0.0529 1.56% Castro::do_old_sources() 10 0.04168 0.0464 0.04765 1.41% StateDataPhysBCFunct::() 41 0.03959 0.04258 0.04746 1.40% StateData::FillBoundary(geom) 41 0.03947 0.04247 0.04734 1.40% FabArray::ParallelCopy_nowait() 41 0.03766 0.04138 0.04383 1.30% Castro::post_init() 1 0.03656 0.03798 0.03847 1.14% Castro::normalize_species() 62 0.03245 0.03343 0.03446 1.02% Castro::construct_new_source() 50 0.02846 0.03027 0.03267 0.97% Gravity::interpolate_monopole_grav() 21 0.02803 0.02851 0.02908 0.86% Castro::construct_new_gravity_source() 10 0.02207 0.02375 0.02586 0.76% Castro::apply_source_to_state() 20 0.01464 0.0157 0.01634 0.48% MultiFab::Saxpy() 20 0.0146 0.01565 0.01629 0.48% VisMF::Write(FabArray) 2 0.01149 0.01239 0.01608 0.48% Castro::post_timestep() 10 0.01396 0.01443 0.01556 0.46% Castro::check_for_nan() 20 0.01041 0.01157 0.01284 0.38% MultiFab::contains_nan() 20 0.01039 0.01155 0.01281 0.38% Castro::construct_old_source() 50 0.007519 0.01119 0.01222 0.36% Castro::construct_old_gravity_source() 10 0.007471 0.01111 0.01213 0.36% FabArray::setDomainBndry() 41 0.006903 0.01032 0.01198 0.35% Castro::computeNewDt() 9 0.006799 0.00797 0.008796 0.26% AmrLevel::AmrLevel(dm) 1 0.004309 0.004993 0.006505 0.19% StateData::define() 4 0.004299 0.004984 0.006492 0.19% Castro::enforce_min_density() 62 0.006081 0.006221 0.006449 0.19% Castro::swap_state_time_levels() 10 0.0029 0.003994 0.005469 0.16% Castro::post_regrid() 1 0.001441 0.001783 0.00257 0.08% Castro::finalize_do_advance() 10 0.0004637 0.0009006 0.001087 0.03% Amr::InitAmr() 1 0.000294 0.0003534 0.0004707 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.332e-05 0.0001505 0.0002177 0.01% DistributionMapping::LeastUsedCPUs() 1 7.368e-06 0.0001447 0.0002101 0.01% Castro::enforce_consistent_e() 1 8.47e-05 0.000102 0.0001349 0.00% FabArrayBase::getCPC() 41 6.501e-05 7.618e-05 8.568e-05 0.00% Castro::finalize_advance() 10 5.856e-05 6.415e-05 7.906e-05 0.00% Amr::writeSmallPlotFile() 1 2.597e-05 5.571e-05 6.858e-05 0.00% FabArrayBase::CPC::define() 2 2.441e-05 2.764e-05 3.209e-05 0.00% Castro::enforce_speed_limit() 62 2.387e-05 2.689e-05 3.012e-05 0.00% Castro::create_source_corrector() 10 1.461e-05 1.704e-05 1.894e-05 0.00% Gravity::swapTimeLevels() 10 1.027e-05 1.421e-05 1.739e-05 0.00% Amr::initSubcycle() 1 8.565e-06 1.066e-05 1.499e-05 0.00% Gravity::set_mass_offset() 10 7.282e-06 8.536e-06 1.045e-05 0.00% Castro::retry_advance_ctu() 10 4.224e-06 6.07e-06 9.03e-06 0.00% Castro::FluxRegFineAdd() 10 5.33e-06 6.343e-06 7.255e-06 0.00% DistributionMapping::Distribute() 1 9.87e-07 1.16e-06 1.418e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.01-39-g874ccc6f3f8d) finalized