MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.02-12-g1d566b101fa3) initialized Starting run at 06:31:39 UTC on 2022-02-18. Successfully read inputs file ... Castro git describe: 22.02-4-g0d942c92d AMReX git describe: 22.02-12-g1d566b101 Microphysics git describe: 22.02-4-ga894d649 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015326589 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373289909 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.324745287 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.323401806 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.351821615 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.329460764 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.322256723 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.295711438 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.295184221 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.296966835 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.29522067 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009248106 seconds Ending run at 06:31:42 UTC on 2022-02-18. Run time = 3.461941819 Run time without initialization = 3.221207579 Average number of zones advanced per microsecond: 0.814 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.462 ... 3.462 ... 3.462 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1498 2.2108 2.2545 65.12% Gravity::make_radial_gravity() 21 0.3558 0.3652 0.3783 10.93% Castro::estTimeStep() 21 0.02143 0.1024 0.1621 4.68% Castro::initData() 1 0.03877 0.08959 0.1594 4.60% MultiFab::min() 10 0.04869 0.09233 0.1558 4.50% FabArray::setVal() 143 0.06709 0.07344 0.08258 2.39% FabArray::ParallelCopy_finish() 41 0.03878 0.05475 0.06586 1.90% Castro::reset_internal_energy() 63 0.04965 0.05132 0.05476 1.58% StateData::FillBoundary(geom) 41 0.03809 0.0432 0.04538 1.31% FabArray::ParallelCopy_nowait() 41 0.03776 0.04107 0.04311 1.25% Castro::normalize_species() 62 0.03293 0.0342 0.03619 1.05% FillPatchIterator::Initialize 41 0.02451 0.03172 0.03582 1.03% Gravity::interpolate_monopole_grav() 21 0.0278 0.02852 0.02955 0.85% Castro::construct_new_gravity_source() 10 0.0224 0.02505 0.02949 0.85% Castro::do_advance_ctu() 10 0.01817 0.02067 0.0239 0.69% Castro::expand_state() 10 0.01448 0.01879 0.02228 0.64% Castro::initialize_do_advance() 10 0.01684 0.01806 0.02099 0.61% Castro::computeTemp() 63 0.01837 0.01937 0.02059 0.59% MultiFab::Saxpy() 20 0.01433 0.0154 0.01758 0.51% VisMF::Write(FabArray) 2 0.01112 0.01215 0.01598 0.46% Amr::writePlotFile() 2 0.008805 0.01274 0.01441 0.42% Castro::initialize_advance() 10 0.009582 0.01132 0.01332 0.38% Gravity::get_new_grav_vector() 11 0.01037 0.01107 0.01249 0.36% MultiFab::contains_nan() 20 0.01068 0.01121 0.01204 0.35% Castro::construct_old_gravity_source() 10 0.009858 0.01082 0.01161 0.34% FabArray::setDomainBndry() 41 0.007226 0.01013 0.01134 0.33% Gravity::get_old_grav_vector() 10 0.007654 0.00906 0.01098 0.32% Amr::defBaseLevel() 1 0.006511 0.007728 0.01031 0.30% Castro::construct_new_source() 50 0.00616 0.006759 0.008878 0.26% Castro::enforce_min_density() 62 0.005873 0.006237 0.006702 0.19% StateData::define() 4 0.004379 0.005003 0.006384 0.18% Castro::swap_state_time_levels() 10 0.002888 0.004083 0.005402 0.16% main() 1 0.003692 0.003864 0.003984 0.12% Castro::finalize_do_advance() 10 0.0008973 0.001159 0.001271 0.04% Amr::coarseTimeStep() 10 0.0003523 0.0005868 0.001127 0.03% Amr::InitAmr() 1 0.00028 0.0003472 0.0004565 0.01% Amr::timeStep() 10 0.0001768 0.0002351 0.0004434 0.01% DistributionMapping::LeastUsedCPUs() 1 8.723e-06 0.0001253 0.0002058 0.01% Castro::clean_state() 62 0.0001299 0.0001392 0.0001479 0.00% StateDataPhysBCFunct::() 41 0.0001124 0.0001301 0.0001441 0.00% Castro::enforce_consistent_e() 1 7.51e-05 9.804e-05 0.0001407 0.00% FabArray::ParallelCopy() 41 5.358e-05 7.064e-05 8.721e-05 0.00% Castro::construct_old_source() 50 5.355e-05 7.18e-05 8.219e-05 0.00% Castro::do_old_sources() 10 4.705e-05 5.744e-05 7.617e-05 0.00% FillPatchSingleLevel 41 5.72e-05 6.224e-05 6.899e-05 0.00% Castro::do_new_sources() 10 5.298e-05 6.043e-05 6.891e-05 0.00% Amr::FinalizeInit() 1 5.583e-06 1.404e-05 6.68e-05 0.00% Castro::construct_old_gravity() 10 4.579e-05 5.497e-05 6.462e-05 0.00% Castro::construct_new_gravity() 10 4.06e-05 4.83e-05 6.327e-05 0.00% Amr::writeSmallPlotFile() 1 2.567e-05 4.575e-05 6.059e-05 0.00% Castro::subcycle_advance_ctu() 10 3.221e-05 4.762e-05 5.984e-05 0.00% Castro::finalize_advance() 10 5.068e-05 5.322e-05 5.876e-05 0.00% Castro::apply_source_to_state() 20 3.538e-05 4.543e-05 5.579e-05 0.00% FabArrayBase::getCPC() 41 4.314e-05 5.111e-05 5.559e-05 0.00% Castro::advance() 10 3.106e-05 3.951e-05 5.075e-05 0.00% FabArrayBase::CPC::define() 2 2.16e-05 2.94e-05 4.251e-05 0.00% Castro::enforce_speed_limit() 62 2.726e-05 3.193e-05 3.586e-05 0.00% Castro::check_for_nan() 20 2.308e-05 2.489e-05 2.874e-05 0.00% Castro::post_timestep() 10 8.142e-06 1.294e-05 2.473e-05 0.00% Castro::create_source_corrector() 10 1.253e-05 1.666e-05 2.094e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.47e-06 1.035e-05 1.663e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.99e-06 6.267e-06 1.66e-05 0.00% Gravity::swapTimeLevels() 10 1.082e-05 1.308e-05 1.48e-05 0.00% Amr::initSubcycle() 1 8.244e-06 1.078e-05 1.453e-05 0.00% Gravity::set_mass_offset() 10 6.897e-06 8.618e-06 1.287e-05 0.00% Castro::post_init() 1 3.875e-06 5.247e-06 1.048e-05 0.00% Castro::computeNewDt() 9 6.616e-06 8.071e-06 9.019e-06 0.00% Castro::FluxRegFineAdd() 10 5.27e-06 6.196e-06 7.329e-06 0.00% Castro::retry_advance_ctu() 10 5.125e-06 5.919e-06 7.048e-06 0.00% Amr::InitializeInit() 1 2.36e-06 3.062e-06 5.94e-06 0.00% Castro::post_regrid() 1 3.432e-06 4.507e-06 5.632e-06 0.00% Castro::computeInitialDt() 2 3.707e-06 4.576e-06 5.262e-06 0.00% Amr::init() 1 2.15e-06 2.546e-06 2.927e-06 0.00% Amr::initialInit() 1 1.283e-06 1.739e-06 2.061e-06 0.00% DistributionMapping::Distribute() 1 9.95e-07 1.225e-06 1.488e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.462 3.462 3.462 100.00% Amr::coarseTimeStep() 10 3.208 3.208 3.208 92.67% Amr::timeStep() 10 3.198 3.199 3.199 92.40% Castro::advance() 10 3.184 3.184 3.184 91.97% Castro::subcycle_advance_ctu() 10 3.102 3.11 3.115 89.99% Castro::do_advance_ctu() 10 3.102 3.11 3.115 89.99% Castro::construct_ctu_hydro_source() 10 2.15 2.211 2.254 65.12% Gravity::make_radial_gravity() 21 0.3558 0.3652 0.3783 10.93% Gravity::get_new_grav_vector() 11 0.2396 0.2406 0.2412 6.97% Amr::init() 1 0.2401 0.2402 0.2403 6.94% Amr::initialInit() 1 0.2238 0.2246 0.2253 6.51% Castro::construct_old_gravity() 10 0.2063 0.2143 0.2248 6.49% Gravity::get_old_grav_vector() 10 0.2055 0.2134 0.2238 6.46% Castro::construct_new_gravity() 10 0.2022 0.2028 0.2034 5.88% FillPatchIterator::Initialize 41 0.1714 0.1812 0.1901 5.49% Amr::InitializeInit() 1 0.05593 0.1087 0.183 5.28% Amr::defBaseLevel() 1 0.05593 0.1087 0.183 5.28% Castro::initialize_do_advance() 10 0.1583 0.1697 0.1809 5.23% Amr::FinalizeInit() 1 0.04238 0.1159 0.1687 4.87% Castro::initData() 1 0.04246 0.09373 0.1644 4.75% Castro::estTimeStep() 21 0.02143 0.1024 0.1621 4.68% MultiFab::min() 10 0.04869 0.09233 0.1558 4.50% FillPatchSingleLevel 41 0.1257 0.1394 0.1462 4.22% Castro::expand_state() 10 0.1111 0.1221 0.1319 3.81% Castro::computeInitialDt() 2 0.002488 0.07684 0.1297 3.75% Castro::clean_state() 62 0.1073 0.1102 0.1164 3.36% FabArray::ParallelCopy() 41 0.08008 0.09597 0.1038 3.00% FabArray::setVal() 143 0.06709 0.07344 0.08258 2.39% Castro::initialize_advance() 10 0.06841 0.07419 0.08151 2.35% Castro::do_new_sources() 10 0.05984 0.06634 0.07558 2.18% Castro::computeTemp() 63 0.06835 0.07069 0.07484 2.16% FabArray::ParallelCopy_finish() 41 0.03878 0.05475 0.06586 1.90% Castro::reset_internal_energy() 63 0.04965 0.05132 0.05476 1.58% Castro::do_old_sources() 10 0.04426 0.04577 0.04692 1.36% StateDataPhysBCFunct::() 41 0.0382 0.04333 0.04551 1.31% StateData::FillBoundary(geom) 41 0.03809 0.0432 0.04538 1.31% FabArray::ParallelCopy_nowait() 41 0.03784 0.04115 0.04319 1.25% Castro::post_init() 1 0.038 0.03858 0.03893 1.12% Castro::normalize_species() 62 0.03293 0.0342 0.03619 1.05% Castro::construct_new_source() 50 0.02892 0.03181 0.03601 1.04% Gravity::interpolate_monopole_grav() 21 0.0278 0.02852 0.02955 0.85% Castro::construct_new_gravity_source() 10 0.0224 0.02505 0.02949 0.85% Amr::writePlotFile() 2 0.02405 0.0249 0.02573 0.74% Castro::apply_source_to_state() 20 0.01437 0.01545 0.01762 0.51% MultiFab::Saxpy() 20 0.01433 0.0154 0.01758 0.51% VisMF::Write(FabArray) 2 0.01112 0.01215 0.01598 0.46% Castro::post_timestep() 10 0.01433 0.01456 0.01484 0.43% Castro::check_for_nan() 20 0.0107 0.01124 0.01206 0.35% MultiFab::contains_nan() 20 0.01068 0.01121 0.01204 0.35% Castro::construct_old_source() 50 0.009912 0.01089 0.01168 0.34% Castro::construct_old_gravity_source() 10 0.009858 0.01082 0.01161 0.34% FabArray::setDomainBndry() 41 0.007226 0.01013 0.01134 0.33% Castro::computeNewDt() 9 0.006991 0.00745 0.007725 0.22% Castro::enforce_min_density() 62 0.005873 0.006237 0.006702 0.19% AmrLevel::AmrLevel(dm) 1 0.004389 0.005013 0.006396 0.18% StateData::define() 4 0.004379 0.005003 0.006384 0.18% Castro::swap_state_time_levels() 10 0.002888 0.004083 0.005402 0.16% Castro::post_regrid() 1 0.001463 0.001818 0.002706 0.08% Castro::finalize_do_advance() 10 0.0008973 0.001159 0.001271 0.04% Amr::InitAmr() 1 0.0002894 0.000358 0.000471 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.501e-05 0.0001328 0.000214 0.01% DistributionMapping::LeastUsedCPUs() 1 8.723e-06 0.0001253 0.0002058 0.01% Castro::enforce_consistent_e() 1 7.51e-05 9.804e-05 0.0001407 0.00% FabArrayBase::getCPC() 41 6.474e-05 8.051e-05 9.81e-05 0.00% Castro::finalize_advance() 10 5.622e-05 5.942e-05 6.609e-05 0.00% Amr::writeSmallPlotFile() 1 2.567e-05 4.575e-05 6.059e-05 0.00% FabArrayBase::CPC::define() 2 2.16e-05 2.94e-05 4.251e-05 0.00% Castro::enforce_speed_limit() 62 2.726e-05 3.193e-05 3.586e-05 0.00% Castro::create_source_corrector() 10 1.253e-05 1.666e-05 2.094e-05 0.00% Gravity::swapTimeLevels() 10 1.082e-05 1.308e-05 1.48e-05 0.00% Amr::initSubcycle() 1 8.244e-06 1.078e-05 1.453e-05 0.00% Gravity::set_mass_offset() 10 6.897e-06 8.618e-06 1.287e-05 0.00% Castro::FluxRegFineAdd() 10 5.27e-06 6.196e-06 7.329e-06 0.00% Castro::retry_advance_ctu() 10 5.125e-06 5.919e-06 7.048e-06 0.00% DistributionMapping::Distribute() 1 9.95e-07 1.225e-06 1.488e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.02-12-g1d566b101fa3) finalized