MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.02-14-gaa0dc39f50f7) initialized Starting run at 17:07:18 UTC on 2022-02-19. Successfully read inputs file ... Castro git describe: 22.02-4-g0d942c92d AMReX git describe: 22.02-14-gaa0dc39f5 Microphysics git describe: 22.02-128-g16b46b85 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015541349 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373922755 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.365041325 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.315889816 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.314596064 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.319686432 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.335072344 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.295371292 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.29503988 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.295347135 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.294956375 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009939197 seconds Ending run at 17:07:22 UTC on 2022-02-19. Run time = 3.428051096 Run time without initialization = 3.214707351 Average number of zones advanced per microsecond: 0.815 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.427 ... 3.428 ... 3.428 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1284 2.1948 2.2500 65.63% Gravity::make_radial_gravity() 21 0.3589 0.3717 0.3886 11.33% MultiFab::min() 10 0.04471 0.1014 0.1703 4.97% Castro::initData() 1 0.03857 0.08921 0.1368 3.99% Castro::estTimeStep() 21 0.02429 0.07185 0.1279 3.73% FabArray::setVal() 143 0.06696 0.07297 0.08373 2.44% FabArray::ParallelCopy_finish() 41 0.03995 0.05526 0.072 2.10% Castro::reset_internal_energy() 63 0.04999 0.05182 0.05511 1.61% StateData::FillBoundary(geom) 41 0.0407 0.04249 0.04732 1.38% FabArray::ParallelCopy_nowait() 41 0.03524 0.04094 0.04387 1.28% Castro::normalize_species() 62 0.03257 0.03399 0.03576 1.04% FillPatchIterator::Initialize 41 0.02357 0.03177 0.03524 1.03% Gravity::interpolate_monopole_grav() 21 0.0278 0.02864 0.02997 0.87% Castro::construct_new_gravity_source() 10 0.02125 0.0233 0.02458 0.72% Castro::expand_state() 10 0.0122 0.01859 0.02442 0.71% Castro::do_advance_ctu() 10 0.0182 0.02 0.02323 0.68% Castro::computeTemp() 63 0.01788 0.01935 0.02118 0.62% Castro::initialize_do_advance() 10 0.01089 0.01681 0.01966 0.57% VisMF::Write(FabArray) 2 0.01174 0.01251 0.01578 0.46% Amr::writePlotFile() 2 0.01 0.01398 0.01554 0.45% MultiFab::Saxpy() 20 0.01398 0.01476 0.01519 0.44% FabArray::setDomainBndry() 41 0.006894 0.01028 0.01401 0.41% Castro::initialize_advance() 10 0.01014 0.01176 0.01354 0.40% Gravity::get_new_grav_vector() 11 0.009653 0.01098 0.01237 0.36% MultiFab::contains_nan() 20 0.0103 0.01111 0.01169 0.34% Castro::construct_old_gravity_source() 10 0.007265 0.01049 0.01127 0.33% Gravity::get_old_grav_vector() 10 0.00703 0.009215 0.01069 0.31% Amr::defBaseLevel() 1 0.006384 0.007596 0.009927 0.29% Castro::construct_new_source() 50 0.006134 0.006562 0.006839 0.20% Castro::enforce_min_density() 62 0.006015 0.006255 0.006555 0.19% StateData::define() 4 0.004209 0.004922 0.006252 0.18% Castro::swap_state_time_levels() 10 0.003461 0.003949 0.004839 0.14% Amr::coarseTimeStep() 10 0.0003437 0.001544 0.004464 0.13% main() 1 0.003317 0.003742 0.004149 0.12% Castro::finalize_do_advance() 10 0.0004664 0.0008905 0.001065 0.03% Amr::InitAmr() 1 0.000269 0.0003466 0.0005764 0.02% Amr::timeStep() 10 0.0001838 0.0002385 0.0004627 0.01% DistributionMapping::LeastUsedCPUs() 1 8.78e-06 0.000277 0.0003745 0.01% Castro::clean_state() 62 0.0001366 0.0001503 0.0001643 0.00% StateDataPhysBCFunct::() 41 0.0001231 0.0001335 0.0001483 0.00% Castro::enforce_consistent_e() 1 7.903e-05 9.89e-05 0.0001407 0.00% Castro::construct_old_source() 50 5.51e-05 8.132e-05 9.249e-05 0.00% Amr::FinalizeInit() 1 3.856e-06 1.414e-05 7.801e-05 0.00% FabArray::ParallelCopy() 41 6.221e-05 6.909e-05 7.734e-05 0.00% FillPatchSingleLevel 41 6.246e-05 7.082e-05 7.733e-05 0.00% Castro::do_old_sources() 10 6.031e-05 6.75e-05 7.57e-05 0.00% Castro::do_new_sources() 10 5.516e-05 6.536e-05 7.566e-05 0.00% Amr::writeSmallPlotFile() 1 2.546e-05 4.809e-05 7.212e-05 0.00% FabArrayBase::getCPC() 41 4.984e-05 6.103e-05 6.93e-05 0.00% Castro::apply_source_to_state() 20 4.213e-05 5.062e-05 6.263e-05 0.00% Castro::advance() 10 3.107e-05 4.168e-05 6.195e-05 0.00% Castro::construct_old_gravity() 10 4.419e-05 5.722e-05 6.181e-05 0.00% Castro::subcycle_advance_ctu() 10 3.445e-05 4.982e-05 5.935e-05 0.00% Castro::finalize_advance() 10 5.171e-05 5.406e-05 5.603e-05 0.00% Castro::construct_new_gravity() 10 4.455e-05 4.841e-05 5.412e-05 0.00% Castro::enforce_speed_limit() 62 2.915e-05 3.476e-05 4.048e-05 0.00% FabArrayBase::CPC::define() 2 2.031e-05 2.813e-05 3.324e-05 0.00% Castro::check_for_nan() 20 2.403e-05 2.809e-05 3.132e-05 0.00% Castro::create_source_corrector() 10 1.33e-05 1.632e-05 2.009e-05 0.00% Gravity::swapTimeLevels() 10 9.967e-06 1.386e-05 1.589e-05 0.00% Amr::initSubcycle() 1 8.396e-06 1.056e-05 1.489e-05 0.00% Castro::post_timestep() 10 9.217e-06 1.053e-05 1.401e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.018e-06 8.907e-06 1.234e-05 0.00% Castro::post_init() 1 3.192e-06 5.913e-06 1.202e-05 0.00% Castro::computeNewDt() 9 6.961e-06 8.012e-06 9.093e-06 0.00% Gravity::set_mass_offset() 10 7.384e-06 8.22e-06 8.842e-06 0.00% Amr::InitializeInit() 1 2.059e-06 3.102e-06 8.333e-06 0.00% Castro::FluxRegFineAdd() 10 6.022e-06 6.553e-06 7.552e-06 0.00% Castro::computeInitialDt() 2 3.375e-06 4.82e-06 6.95e-06 0.00% Castro::retry_advance_ctu() 10 5.513e-06 6.054e-06 6.339e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.543e-06 4.404e-06 5.68e-06 0.00% Castro::post_regrid() 1 1.768e-06 4.201e-06 5.652e-06 0.00% Amr::init() 1 2.095e-06 2.493e-06 3.494e-06 0.00% Amr::initialInit() 1 1.337e-06 1.527e-06 1.842e-06 0.00% DistributionMapping::Distribute() 1 8.94e-07 1.16e-06 1.512e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.427 3.428 3.428 100.00% Amr::coarseTimeStep() 10 3.201 3.201 3.201 93.37% Amr::timeStep() 10 3.187 3.188 3.191 93.08% Castro::advance() 10 3.173 3.173 3.173 92.57% Castro::subcycle_advance_ctu() 10 3.089 3.097 3.102 90.49% Castro::do_advance_ctu() 10 3.089 3.097 3.102 90.49% Castro::construct_ctu_hydro_source() 10 2.128 2.195 2.25 65.63% Gravity::make_radial_gravity() 21 0.3589 0.3717 0.3886 11.33% Gravity::get_new_grav_vector() 11 0.2373 0.2389 0.2399 7.00% Castro::construct_old_gravity() 10 0.2116 0.2217 0.2353 6.87% Gravity::get_old_grav_vector() 10 0.2109 0.2208 0.2347 6.85% Amr::init() 1 0.2126 0.2128 0.2129 6.21% Castro::construct_new_gravity() 10 0.2005 0.2014 0.202 5.89% Amr::initialInit() 1 0.1957 0.1964 0.1972 5.75% FillPatchIterator::Initialize 41 0.1621 0.1811 0.1924 5.61% Castro::initialize_do_advance() 10 0.1476 0.1673 0.181 5.28% MultiFab::min() 10 0.04471 0.1014 0.1703 4.97% Amr::InitializeInit() 1 0.05529 0.1081 0.1553 4.53% Amr::defBaseLevel() 1 0.05529 0.1081 0.1553 4.53% FillPatchSingleLevel 41 0.1228 0.139 0.1486 4.33% Amr::FinalizeInit() 1 0.04113 0.08825 0.141 4.11% Castro::initData() 1 0.04236 0.09331 0.1409 4.11% Castro::expand_state() 10 0.104 0.1213 0.1319 3.85% Castro::estTimeStep() 21 0.02429 0.07185 0.1279 3.73% Castro::clean_state() 62 0.1068 0.1105 0.1171 3.42% FabArray::ParallelCopy() 41 0.08112 0.09636 0.1074 3.13% Castro::computeInitialDt() 2 0.002428 0.04962 0.1025 2.99% Castro::initialize_advance() 10 0.07061 0.07572 0.08395 2.45% FabArray::setVal() 143 0.06696 0.07297 0.08373 2.44% Castro::computeTemp() 63 0.0688 0.07116 0.07628 2.23% FabArray::ParallelCopy_finish() 41 0.03995 0.05526 0.072 2.10% Castro::do_new_sources() 10 0.05907 0.06181 0.06491 1.89% Castro::reset_internal_energy() 63 0.04999 0.05182 0.05511 1.61% Castro::do_old_sources() 10 0.04064 0.04602 0.04832 1.41% StateDataPhysBCFunct::() 41 0.04085 0.04262 0.04745 1.38% StateData::FillBoundary(geom) 41 0.0407 0.04249 0.04732 1.38% FabArray::ParallelCopy_nowait() 41 0.03534 0.04103 0.04395 1.28% Castro::post_init() 1 0.03775 0.03827 0.03879 1.13% Castro::normalize_species() 62 0.03257 0.03399 0.03576 1.04% Castro::construct_new_source() 50 0.02738 0.02987 0.03139 0.92% Gravity::interpolate_monopole_grav() 21 0.0278 0.02864 0.02997 0.87% Amr::writePlotFile() 2 0.02557 0.02649 0.0273 0.80% Castro::construct_new_gravity_source() 10 0.02125 0.0233 0.02458 0.72% Castro::post_timestep() 10 0.01384 0.01504 0.01753 0.51% VisMF::Write(FabArray) 2 0.01174 0.01251 0.01578 0.46% Castro::apply_source_to_state() 20 0.01403 0.01481 0.01524 0.44% MultiFab::Saxpy() 20 0.01398 0.01476 0.01519 0.44% FabArray::setDomainBndry() 41 0.006894 0.01028 0.01401 0.41% Castro::check_for_nan() 20 0.01032 0.01114 0.01172 0.34% MultiFab::contains_nan() 20 0.0103 0.01111 0.01169 0.34% Castro::computeNewDt() 9 0.006955 0.009435 0.01141 0.33% Castro::construct_old_source() 50 0.00732 0.01057 0.01136 0.33% Castro::construct_old_gravity_source() 10 0.007265 0.01049 0.01127 0.33% Castro::enforce_min_density() 62 0.006015 0.006255 0.006555 0.19% AmrLevel::AmrLevel(dm) 1 0.004218 0.004931 0.006262 0.18% StateData::define() 4 0.004209 0.004922 0.006252 0.18% Castro::swap_state_time_levels() 10 0.003461 0.003949 0.004839 0.14% Castro::post_regrid() 1 0.001446 0.001832 0.002681 0.08% Castro::finalize_do_advance() 10 0.0004664 0.0008905 0.001065 0.03% Amr::InitAmr() 1 0.0002781 0.0003572 0.0005913 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.44e-05 0.0002826 0.0003815 0.01% DistributionMapping::LeastUsedCPUs() 1 8.78e-06 0.000277 0.0003745 0.01% Castro::enforce_consistent_e() 1 7.903e-05 9.89e-05 0.0001407 0.00% FabArrayBase::getCPC() 41 7.632e-05 8.916e-05 9.858e-05 0.00% Amr::writeSmallPlotFile() 1 2.546e-05 4.809e-05 7.212e-05 0.00% Castro::finalize_advance() 10 5.899e-05 6.062e-05 6.324e-05 0.00% Castro::enforce_speed_limit() 62 2.915e-05 3.476e-05 4.048e-05 0.00% FabArrayBase::CPC::define() 2 2.031e-05 2.813e-05 3.324e-05 0.00% Castro::create_source_corrector() 10 1.33e-05 1.632e-05 2.009e-05 0.00% Gravity::swapTimeLevels() 10 9.967e-06 1.386e-05 1.589e-05 0.00% Amr::initSubcycle() 1 8.396e-06 1.056e-05 1.489e-05 0.00% Gravity::set_mass_offset() 10 7.384e-06 8.22e-06 8.842e-06 0.00% Castro::FluxRegFineAdd() 10 6.022e-06 6.553e-06 7.552e-06 0.00% Castro::retry_advance_ctu() 10 5.513e-06 6.054e-06 6.339e-06 0.00% DistributionMapping::Distribute() 1 8.94e-07 1.16e-06 1.512e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.02-14-gaa0dc39f50f7) finalized