MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (22.02-15-g067830e6c9fe) initialized
Starting run at 06:31:37 UTC on 2022-02-28.
Successfully read inputs file ...
Castro git describe: 22.02-4-g0d942c92d
AMReX git describe: 22.02-15-g067830e6c
Microphysics git describe: 22.02-10-g1a114f0a
reading extern runtime parameters ...
3 Species:
C12 O16 Mg24
Successfully read inputs file ...
INITIAL GRIDS
Level 0 8 grids 262144 cells 100 % of domain
smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32
PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.012807519 seconds
[Level 0 step 1] ADVANCE with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells
[STEP 1] Coarse TimeStep time: 0.353290063
[STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05
[Level 0 step 2] ADVANCE with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells
[STEP 2] Coarse TimeStep time: 0.340784083
[STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05
[Level 0 step 3] ADVANCE with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells
[STEP 3] Coarse TimeStep time: 0.351275322
[STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05
[Level 0 step 4] ADVANCE with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells
[STEP 4] Coarse TimeStep time: 0.319747357
[STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05
[Level 0 step 5] ADVANCE with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells
[STEP 5] Coarse TimeStep time: 0.320126371
[STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05
[Level 0 step 6] ADVANCE with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells
[STEP 6] Coarse TimeStep time: 0.340455262
[STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05
[Level 0 step 7] ADVANCE with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells
[STEP 7] Coarse TimeStep time: 0.299459895
[STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05
[Level 0 step 8] ADVANCE with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells
[STEP 8] Coarse TimeStep time: 0.293994464
[STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05
[Level 0 step 9] ADVANCE with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells
[STEP 9] Coarse TimeStep time: 0.293916716
[STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05
[Level 0 step 10] ADVANCE with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells
[STEP 10] Coarse TimeStep time: 0.294635282
[STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05
PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.009569154 seconds
Ending run at 06:31:41 UTC on 2022-02-28.
Run time = 3.397847903
Run time without initialization = 3.221238051
Average number of zones advanced per microsecond: 0.814
Average number of zones advanced per microsecond per rank: 0.102
TinyProfiler total time across processes [min...avg...max]: 3.397 ... 3.398 ... 3.398
-------------------------------------------------------------------------------------------
Name NCalls Excl. Min Excl. Avg Excl. Max Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 10 2.1932 2.2327 2.2792 67.08%
Gravity::make_radial_gravity() 21 0.3371 0.3462 0.3556 10.47%
Castro::initData() 1 0.03945 0.08079 0.1172 3.45%
MultiFab::min() 10 0.02058 0.0709 0.1131 3.33%
Castro::estTimeStep() 21 0.02027 0.05943 0.09962 2.93%
FabArray::setVal() 143 0.06998 0.0739 0.08095 2.38%
FabArray::ParallelCopy_finish() 41 0.03518 0.04661 0.05574 1.64%
Castro::reset_internal_energy() 63 0.04798 0.05088 0.052 1.53%
FabArray::ParallelCopy_nowait() 41 0.04136 0.04411 0.04679 1.38%
StateData::FillBoundary(geom) 41 0.04218 0.04359 0.04659 1.37%
FillPatchIterator::Initialize 41 0.02477 0.03439 0.03733 1.10%
Castro::normalize_species() 62 0.03324 0.03439 0.03558 1.05%
Gravity::interpolate_monopole_grav() 21 0.02841 0.02874 0.02919 0.86%
Castro::construct_new_gravity_source() 10 0.02283 0.02395 0.02596 0.76%
Castro::do_advance_ctu() 10 0.01803 0.0219 0.02573 0.76%
Castro::expand_state() 10 0.01793 0.02164 0.02335 0.69%
Castro::computeTemp() 63 0.01721 0.01917 0.02048 0.60%
MultiFab::Saxpy() 20 0.01536 0.01703 0.02044 0.60%
Castro::initialize_do_advance() 10 0.01655 0.01846 0.01937 0.57%
Castro::construct_old_gravity_source() 10 0.01101 0.01244 0.01633 0.48%
VisMF::Write(FabArray) 2 0.01129 0.01206 0.01429 0.42%
Castro::initialize_advance() 10 0.01029 0.01209 0.01397 0.41%
Gravity::get_new_grav_vector() 11 0.01059 0.01204 0.01357 0.40%
MultiFab::contains_nan() 20 0.01079 0.01187 0.01274 0.37%
FabArray::setDomainBndry() 41 0.008354 0.01137 0.01218 0.36%
Gravity::get_old_grav_vector() 10 0.008722 0.01034 0.01187 0.35%
Amr::writePlotFile() 2 0.008295 0.0107 0.01162 0.34%
Amr::defBaseLevel() 1 0.006717 0.007065 0.009313 0.27%
Castro::construct_new_source() 50 0.006587 0.006764 0.006976 0.21%
Castro::enforce_min_density() 62 0.006041 0.006357 0.006642 0.20%
StateData::define() 4 0.004351 0.004483 0.004866 0.14%
main() 1 0.003589 0.003876 0.004146 0.12%
Castro::swap_state_time_levels() 10 0.002947 0.003791 0.003933 0.12%
Castro::finalize_do_advance() 10 0.0008055 0.0009358 0.00103 0.03%
Amr::coarseTimeStep() 10 0.0003229 0.0005827 0.001025 0.03%
Amr::timeStep() 10 0.0001739 0.0002313 0.0004501 0.01%
Amr::InitAmr() 1 0.0002698 0.0003014 0.0004369 0.01%
StateDataPhysBCFunct::() 41 0.0001132 0.0001377 0.0001985 0.01%
Castro::clean_state() 62 0.0001341 0.0001499 0.0001732 0.01%
DistributionMapping::LeastUsedCPUs() 1 9.583e-06 0.0001443 0.0001673 0.00%
Castro::construct_old_source() 50 6.522e-05 8.594e-05 0.0001398 0.00%
Castro::enforce_consistent_e() 1 7.822e-05 9.269e-05 0.0001081 0.00%
Castro::apply_source_to_state() 20 3.661e-05 5.947e-05 9.126e-05 0.00%
Castro::do_old_sources() 10 5.132e-05 6.518e-05 8.086e-05 0.00%
FabArray::ParallelCopy() 41 5.71e-05 6.612e-05 7.647e-05 0.00%
FillPatchSingleLevel 41 5.531e-05 6.838e-05 7.533e-05 0.00%
Castro::do_new_sources() 10 5.175e-05 6.234e-05 7.147e-05 0.00%
Amr::FinalizeInit() 1 4.215e-06 1.371e-05 6.943e-05 0.00%
FabArrayBase::getCPC() 41 4.792e-05 5.615e-05 6.722e-05 0.00%
Amr::writeSmallPlotFile() 1 2.618e-05 5.229e-05 6.675e-05 0.00%
Castro::subcycle_advance_ctu() 10 5.027e-05 5.856e-05 6.533e-05 0.00%
Castro::construct_old_gravity() 10 4.941e-05 5.52e-05 6.119e-05 0.00%
Castro::advance() 10 3.489e-05 4.292e-05 5.84e-05 0.00%
Castro::finalize_advance() 10 5.167e-05 5.482e-05 5.817e-05 0.00%
Castro::construct_new_gravity() 10 4.145e-05 4.825e-05 5.72e-05 0.00%
Castro::enforce_speed_limit() 62 3.087e-05 3.373e-05 3.812e-05 0.00%
FabArrayBase::CPC::define() 2 2.401e-05 2.71e-05 3.3e-05 0.00%
Castro::check_for_nan() 20 2.427e-05 2.588e-05 3.034e-05 0.00%
Castro::create_source_corrector() 10 1.25e-05 1.646e-05 1.986e-05 0.00%
Gravity::swapTimeLevels() 10 1.075e-05 1.291e-05 1.704e-05 0.00%
Castro::post_init() 1 3.471e-06 6.276e-06 1.324e-05 0.00%
Castro::post_timestep() 10 9.037e-06 1.041e-05 1.194e-05 0.00%
AmrLevel::AmrLevel(dm) 1 7.004e-06 9.12e-06 1.08e-05 0.00%
Amr::initSubcycle() 1 8.868e-06 9.411e-06 9.848e-06 0.00%
Gravity::set_mass_offset() 10 7.581e-06 8.537e-06 9.173e-06 0.00%
Castro::computeNewDt() 9 6.851e-06 8.09e-06 9.041e-06 0.00%
Castro::FluxRegFineAdd() 10 6.122e-06 6.905e-06 7.951e-06 0.00%
Amr::InitializeInit() 1 1.91e-06 3.444e-06 7.763e-06 0.00%
Castro::retry_advance_ctu() 10 5.895e-06 6.382e-06 7.016e-06 0.00%
DistributionMapping::SFCProcessorMapDoIt() 1 3.92e-06 4.807e-06 6.873e-06 0.00%
Castro::post_regrid() 1 1.897e-06 3.413e-06 5.461e-06 0.00%
Castro::computeInitialDt() 2 3.429e-06 4.361e-06 5.005e-06 0.00%
Amr::init() 1 1.999e-06 2.409e-06 2.894e-06 0.00%
Amr::initialInit() 1 1.152e-06 1.481e-06 1.734e-06 0.00%
DistributionMapping::Distribute() 1 8.99e-07 1.109e-06 1.396e-06 0.00%
-------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------
Name NCalls Incl. Min Incl. Avg Incl. Max Max %
-------------------------------------------------------------------------------------------
main() 1 3.397 3.398 3.398 100.00%
Amr::coarseTimeStep() 10 3.208 3.208 3.208 94.40%
Amr::timeStep() 10 3.198 3.199 3.199 94.15%
Castro::advance() 10 3.184 3.184 3.184 93.71%
Castro::subcycle_advance_ctu() 10 3.108 3.11 3.113 91.62%
Castro::do_advance_ctu() 10 3.108 3.11 3.113 91.61%
Castro::construct_ctu_hydro_source() 10 2.193 2.233 2.279 67.08%
Gravity::make_radial_gravity() 21 0.3371 0.3462 0.3556 10.47%
Gravity::get_new_grav_vector() 11 0.2264 0.2279 0.2289 6.74%
Castro::construct_old_gravity() 10 0.2015 0.2097 0.2216 6.52%
Gravity::get_old_grav_vector() 10 0.2006 0.2088 0.2209 6.50%
Castro::construct_new_gravity() 10 0.203 0.2039 0.2047 6.03%
FillPatchIterator::Initialize 41 0.172 0.1804 0.19 5.59%
Amr::init() 1 0.176 0.1761 0.1762 5.18%
Castro::initialize_do_advance() 10 0.1577 0.1635 0.1687 4.96%
Amr::initialInit() 1 0.1628 0.163 0.1632 4.80%
FillPatchSingleLevel 41 0.1227 0.1347 0.1429 4.21%
Amr::InitializeInit() 1 0.05764 0.09931 0.1357 3.99%
Amr::defBaseLevel() 1 0.05764 0.09931 0.1357 3.99%
Castro::initData() 1 0.04342 0.08482 0.1213 3.57%
Castro::expand_state() 10 0.1095 0.1155 0.1203 3.54%
MultiFab::min() 10 0.02058 0.0709 0.1131 3.33%
Castro::clean_state() 62 0.1046 0.11 0.1121 3.30%
Amr::FinalizeInit() 1 0.02737 0.06371 0.1053 3.10%
Castro::estTimeStep() 21 0.02027 0.05943 0.09962 2.93%
FabArray::ParallelCopy() 41 0.08025 0.09086 0.09828 2.89%
FabArray::setVal() 143 0.06998 0.0739 0.08095 2.38%
Castro::computeInitialDt() 2 0.001715 0.0381 0.0798 2.35%
Castro::initialize_advance() 10 0.07105 0.07357 0.07571 2.23%
Castro::computeTemp() 63 0.06518 0.07005 0.07248 2.13%
Castro::do_new_sources() 10 0.06044 0.06374 0.06723 1.98%
Castro::do_old_sources() 10 0.04649 0.05077 0.05739 1.69%
FabArray::ParallelCopy_finish() 41 0.03518 0.04661 0.05574 1.64%
Castro::reset_internal_energy() 63 0.04798 0.05088 0.052 1.53%
FabArray::ParallelCopy_nowait() 41 0.04146 0.04419 0.04688 1.38%
StateDataPhysBCFunct::() 41 0.04232 0.04372 0.04671 1.37%
StateData::FillBoundary(geom) 41 0.04218 0.04359 0.04659 1.37%
Castro::normalize_species() 62 0.03324 0.03439 0.03558 1.05%
Castro::construct_new_source() 50 0.02956 0.03071 0.03294 0.97%
Gravity::interpolate_monopole_grav() 21 0.02841 0.02874 0.02919 0.86%
Castro::construct_new_gravity_source() 10 0.02283 0.02395 0.02596 0.76%
Castro::post_init() 1 0.02486 0.02501 0.02512 0.74%
Amr::writePlotFile() 2 0.02259 0.02276 0.02299 0.68%
Castro::apply_source_to_state() 20 0.0154 0.01709 0.0205 0.60%
MultiFab::Saxpy() 20 0.01536 0.01703 0.02044 0.60%
Castro::construct_old_source() 50 0.01108 0.01253 0.01641 0.48%
Castro::construct_old_gravity_source() 10 0.01101 0.01244 0.01633 0.48%
Castro::post_timestep() 10 0.01385 0.01444 0.01467 0.43%
VisMF::Write(FabArray) 2 0.01129 0.01206 0.01429 0.42%
Castro::check_for_nan() 20 0.01082 0.0119 0.01276 0.38%
MultiFab::contains_nan() 20 0.01079 0.01187 0.01274 0.37%
FabArray::setDomainBndry() 41 0.008354 0.01137 0.01218 0.36%
Castro::computeNewDt() 9 0.006836 0.007275 0.007571 0.22%
Castro::enforce_min_density() 62 0.006041 0.006357 0.006642 0.20%
AmrLevel::AmrLevel(dm) 1 0.00436 0.004492 0.004874 0.14%
StateData::define() 4 0.004351 0.004483 0.004866 0.14%
Castro::swap_state_time_levels() 10 0.002947 0.003791 0.003933 0.12%
Castro::post_regrid() 1 0.001424 0.0015 0.00156 0.05%
Castro::finalize_do_advance() 10 0.0008055 0.0009358 0.00103 0.03%
Amr::InitAmr() 1 0.0002795 0.0003108 0.0004457 0.01%
DistributionMapping::SFCProcessorMapDoIt() 1 1.47e-05 0.0001503 0.0001748 0.01%
DistributionMapping::LeastUsedCPUs() 1 9.583e-06 0.0001443 0.0001673 0.00%
Castro::enforce_consistent_e() 1 7.822e-05 9.269e-05 0.0001081 0.00%
FabArrayBase::getCPC() 41 7.448e-05 8.326e-05 0.0001002 0.00%
Amr::writeSmallPlotFile() 1 2.618e-05 5.229e-05 6.675e-05 0.00%
Castro::finalize_advance() 10 5.779e-05 6.172e-05 6.505e-05 0.00%
Castro::enforce_speed_limit() 62 3.087e-05 3.373e-05 3.812e-05 0.00%
FabArrayBase::CPC::define() 2 2.401e-05 2.71e-05 3.3e-05 0.00%
Castro::create_source_corrector() 10 1.25e-05 1.646e-05 1.986e-05 0.00%
Gravity::swapTimeLevels() 10 1.075e-05 1.291e-05 1.704e-05 0.00%
Amr::initSubcycle() 1 8.868e-06 9.411e-06 9.848e-06 0.00%
Gravity::set_mass_offset() 10 7.581e-06 8.537e-06 9.173e-06 0.00%
Castro::FluxRegFineAdd() 10 6.122e-06 6.905e-06 7.951e-06 0.00%
Castro::retry_advance_ctu() 10 5.895e-06 6.382e-06 7.016e-06 0.00%
DistributionMapping::Distribute() 1 8.99e-07 1.109e-06 1.396e-06 0.00%
-------------------------------------------------------------------------------------------
Unused ParmParse Variables:
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2]
AMReX (22.02-15-g067830e6c9fe) finalized