MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.03) initialized Starting run at 06:31:11 UTC on 2022-03-02. Successfully read inputs file ... Castro git describe: 22.02-4-g0d942c92d AMReX git describe: 22.03 Microphysics git describe: 22.03 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012911861 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.335883136 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.33768187 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336393228 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.308016196 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.308793019 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.338093492 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.296249236 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.289726536 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.288999773 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.288562349 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009466574 seconds Ending run at 06:31:14 UTC on 2022-03-02. Run time = 3.374618105 Run time without initialization = 3.140967855 Average number of zones advanced per microsecond: 0.835 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.374 ... 3.374 ... 3.375 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1275 2.1616 2.2073 65.41% Gravity::make_radial_gravity() 21 0.3428 0.354 0.3698 10.96% Castro::initData() 1 0.03932 0.09526 0.1598 4.73% Castro::estTimeStep() 21 0.02182 0.09356 0.1554 4.61% MultiFab::min() 10 0.04651 0.1023 0.1371 4.06% FabArray::ParallelCopy_finish() 41 0.04 0.05084 0.09242 2.74% FabArray::setVal() 143 0.0518 0.06642 0.07175 2.13% Castro::reset_internal_energy() 63 0.0488 0.05076 0.05287 1.57% StateData::FillBoundary(geom) 41 0.03916 0.0414 0.04524 1.34% FabArray::ParallelCopy_nowait() 41 0.03363 0.03853 0.04068 1.21% Castro::normalize_species() 62 0.03269 0.03375 0.03525 1.04% FillPatchIterator::Initialize 41 0.0224 0.02794 0.03088 0.91% Gravity::interpolate_monopole_grav() 21 0.02767 0.02812 0.02865 0.85% Castro::construct_new_gravity_source() 10 0.0202 0.02318 0.02701 0.80% Castro::do_advance_ctu() 10 0.01502 0.01921 0.02561 0.76% Castro::expand_state() 10 0.0123 0.01808 0.0213 0.63% Castro::computeTemp() 63 0.01837 0.01908 0.01972 0.58% Castro::initialize_do_advance() 10 0.01001 0.01505 0.01678 0.50% MultiFab::Saxpy() 20 0.01232 0.01441 0.01603 0.47% VisMF::Write(FabArray) 2 0.01029 0.01202 0.01458 0.43% Gravity::get_new_grav_vector() 11 0.009532 0.01061 0.01304 0.39% Castro::initialize_advance() 10 0.00391 0.01033 0.01288 0.38% Amr::writePlotFile() 2 0.008 0.01078 0.01279 0.38% Castro::construct_old_gravity_source() 10 0.007101 0.01067 0.01251 0.37% MultiFab::contains_nan() 20 0.01045 0.0111 0.01207 0.36% Gravity::get_old_grav_vector() 10 0.00665 0.009155 0.01104 0.33% FabArray::setDomainBndry() 41 0.006764 0.009159 0.01063 0.31% Amr::defBaseLevel() 1 0.006463 0.008121 0.009837 0.29% Castro::construct_new_source() 50 0.005799 0.006302 0.006751 0.20% Castro::enforce_min_density() 62 0.005619 0.006181 0.006559 0.19% StateData::define() 4 0.004303 0.005298 0.006344 0.19% Castro::swap_state_time_levels() 10 0.002415 0.003511 0.004142 0.12% main() 1 0.003354 0.003774 0.004026 0.12% Amr::coarseTimeStep() 10 0.0004561 0.00089 0.002242 0.07% Castro::finalize_do_advance() 10 0.0004613 0.0009877 0.00128 0.04% Amr::timeStep() 10 0.0001619 0.0002326 0.0005254 0.02% Amr::InitAmr() 1 0.0002592 0.0003885 0.0004768 0.01% DistributionMapping::LeastUsedCPUs() 1 8.325e-06 0.0001131 0.0002437 0.01% Castro::clean_state() 62 0.0001252 0.000142 0.000197 0.01% StateDataPhysBCFunct::() 41 0.0001152 0.0001355 0.0001842 0.01% Castro::enforce_consistent_e() 1 8.374e-05 0.0001104 0.0001543 0.00% Castro::construct_old_source() 50 4.114e-05 6.6e-05 7.907e-05 0.00% FillPatchSingleLevel 41 5.678e-05 6.417e-05 7.314e-05 0.00% FabArray::ParallelCopy() 41 5.956e-05 6.787e-05 7.174e-05 0.00% Castro::do_new_sources() 10 4.937e-05 5.917e-05 7.079e-05 0.00% Amr::writeSmallPlotFile() 1 3.122e-05 5.266e-05 6.838e-05 0.00% Amr::FinalizeInit() 1 4.761e-06 1.344e-05 6.647e-05 0.00% Castro::do_old_sources() 10 4.194e-05 5.439e-05 6.535e-05 0.00% Castro::construct_old_gravity() 10 4.056e-05 5.265e-05 6.334e-05 0.00% FabArrayBase::getCPC() 41 4.533e-05 5.448e-05 6.188e-05 0.00% Castro::subcycle_advance_ctu() 10 3.685e-05 4.8e-05 5.681e-05 0.00% Castro::finalize_advance() 10 4.964e-05 5.13e-05 5.385e-05 0.00% Castro::construct_new_gravity() 10 4.019e-05 4.346e-05 5.113e-05 0.00% Castro::apply_source_to_state() 20 3.896e-05 4.643e-05 4.953e-05 0.00% Castro::enforce_speed_limit() 62 2.834e-05 3.376e-05 4.252e-05 0.00% Castro::advance() 10 3.227e-05 3.714e-05 4.057e-05 0.00% Castro::check_for_nan() 20 2.076e-05 2.57e-05 3.899e-05 0.00% Castro::computeNewDt() 9 6.896e-06 1.16e-05 3.85e-05 0.00% Castro::create_source_corrector() 10 1.41e-05 1.958e-05 3.449e-05 0.00% FabArrayBase::CPC::define() 2 2.101e-05 2.545e-05 3.341e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.424e-06 1.21e-05 1.939e-05 0.00% Gravity::swapTimeLevels() 10 8.222e-06 1.292e-05 1.894e-05 0.00% Amr::initSubcycle() 1 8.18e-06 1.153e-05 1.492e-05 0.00% Castro::post_timestep() 10 7.786e-06 9.699e-06 1.153e-05 0.00% Castro::post_init() 1 3.409e-06 5.841e-06 1.09e-05 0.00% Gravity::set_mass_offset() 10 6.934e-06 7.776e-06 8.733e-06 0.00% Castro::post_regrid() 1 2.533e-06 4.741e-06 8.138e-06 0.00% Castro::FluxRegFineAdd() 10 5.22e-06 5.919e-06 6.863e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.847e-06 5.204e-06 6.782e-06 0.00% Amr::InitializeInit() 1 2.045e-06 3.586e-06 6.775e-06 0.00% Castro::retry_advance_ctu() 10 4.761e-06 5.825e-06 6.705e-06 0.00% Castro::computeInitialDt() 2 3.593e-06 4.511e-06 5.446e-06 0.00% Amr::init() 1 1.979e-06 2.258e-06 2.632e-06 0.00% Amr::initialInit() 1 1.279e-06 1.717e-06 1.982e-06 0.00% DistributionMapping::Distribute() 1 1.095e-06 1.264e-06 1.51e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.374 3.374 3.375 100.00% Amr::coarseTimeStep() 10 3.128 3.128 3.128 92.68% Amr::timeStep() 10 3.117 3.118 3.118 92.41% Castro::advance() 10 3.102 3.103 3.103 91.95% Castro::subcycle_advance_ctu() 10 3.031 3.035 3.053 90.48% Castro::do_advance_ctu() 10 3.031 3.035 3.053 90.48% Castro::construct_ctu_hydro_source() 10 2.127 2.162 2.207 65.41% Gravity::make_radial_gravity() 21 0.3428 0.354 0.3698 10.96% Amr::init() 1 0.233 0.2331 0.2333 6.91% Gravity::get_new_grav_vector() 11 0.2293 0.2313 0.2325 6.89% Castro::construct_old_gravity() 10 0.2012 0.2091 0.2214 6.56% Gravity::get_old_grav_vector() 10 0.2003 0.2083 0.2208 6.54% Amr::initialInit() 1 0.2196 0.2198 0.2202 6.52% Castro::construct_new_gravity() 10 0.197 0.1986 0.1997 5.92% FillPatchIterator::Initialize 41 0.151 0.1682 0.1963 5.82% Amr::InitializeInit() 1 0.0558 0.1153 0.1833 5.43% Amr::defBaseLevel() 1 0.05579 0.1153 0.1833 5.43% FillPatchSingleLevel 41 0.1199 0.1311 0.1671 4.95% Castro::initData() 1 0.04286 0.09969 0.1649 4.89% Amr::FinalizeInit() 1 0.03685 0.1045 0.1643 4.87% Castro::initialize_do_advance() 10 0.1444 0.1504 0.1593 4.72% Castro::estTimeStep() 21 0.02182 0.09356 0.1554 4.61% MultiFab::min() 10 0.04651 0.1023 0.1371 4.06% Castro::computeInitialDt() 2 0.002094 0.07014 0.1297 3.84% FabArray::ParallelCopy() 41 0.07855 0.08952 0.1262 3.74% Castro::expand_state() 10 0.1004 0.1069 0.1223 3.62% Castro::clean_state() 62 0.1056 0.1087 0.1137 3.37% FabArray::ParallelCopy_finish() 41 0.04 0.05084 0.09242 2.74% Castro::computeTemp() 63 0.06777 0.06984 0.07259 2.15% FabArray::setVal() 143 0.0518 0.06642 0.07175 2.13% Castro::initialize_advance() 10 0.04883 0.06791 0.07164 2.12% Castro::do_new_sources() 10 0.05563 0.06043 0.06566 1.95% Castro::reset_internal_energy() 63 0.0488 0.05076 0.05287 1.57% Castro::do_old_sources() 10 0.03843 0.04566 0.05215 1.55% StateDataPhysBCFunct::() 41 0.03929 0.04153 0.0454 1.35% StateData::FillBoundary(geom) 41 0.03916 0.0414 0.04524 1.34% FabArray::ParallelCopy_nowait() 41 0.03372 0.03861 0.04075 1.21% Castro::normalize_species() 62 0.03269 0.03375 0.03525 1.04% Castro::post_init() 1 0.03288 0.03359 0.03403 1.01% Castro::construct_new_source() 50 0.026 0.02948 0.03324 0.99% Gravity::interpolate_monopole_grav() 21 0.02767 0.02812 0.02865 0.85% Castro::construct_new_gravity_source() 10 0.0202 0.02318 0.02701 0.80% Amr::writePlotFile() 2 0.0224 0.0228 0.02308 0.68% Castro::apply_source_to_state() 20 0.01237 0.01446 0.01607 0.48% MultiFab::Saxpy() 20 0.01232 0.01441 0.01603 0.47% Castro::post_timestep() 10 0.01398 0.01456 0.01544 0.46% VisMF::Write(FabArray) 2 0.01029 0.01202 0.01458 0.43% Castro::construct_old_source() 50 0.007143 0.01074 0.01256 0.37% Castro::construct_old_gravity_source() 10 0.007101 0.01067 0.01251 0.37% Castro::check_for_nan() 20 0.01047 0.01113 0.01209 0.36% MultiFab::contains_nan() 20 0.01045 0.0111 0.01207 0.36% FabArray::setDomainBndry() 41 0.006764 0.009159 0.01063 0.31% Castro::computeNewDt() 9 0.006972 0.008012 0.009299 0.28% Castro::enforce_min_density() 62 0.005619 0.006181 0.006559 0.19% AmrLevel::AmrLevel(dm) 1 0.004312 0.00531 0.006363 0.19% StateData::define() 4 0.004303 0.005298 0.006344 0.19% Castro::swap_state_time_levels() 10 0.002415 0.003511 0.004142 0.12% Castro::post_regrid() 1 0.001408 0.001773 0.002501 0.07% Castro::finalize_do_advance() 10 0.0004613 0.0009877 0.00128 0.04% Amr::InitAmr() 1 0.0002679 0.0004 0.0004913 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.436e-05 0.0001195 0.0002513 0.01% DistributionMapping::LeastUsedCPUs() 1 8.325e-06 0.0001131 0.0002437 0.01% Castro::enforce_consistent_e() 1 8.374e-05 0.0001104 0.0001543 0.00% FabArrayBase::getCPC() 41 7.087e-05 7.993e-05 8.829e-05 0.00% Amr::writeSmallPlotFile() 1 3.122e-05 5.266e-05 6.838e-05 0.00% Castro::finalize_advance() 10 5.512e-05 5.722e-05 5.962e-05 0.00% Castro::enforce_speed_limit() 62 2.834e-05 3.376e-05 4.252e-05 0.00% Castro::create_source_corrector() 10 1.41e-05 1.958e-05 3.449e-05 0.00% FabArrayBase::CPC::define() 2 2.101e-05 2.545e-05 3.341e-05 0.00% Gravity::swapTimeLevels() 10 8.222e-06 1.292e-05 1.894e-05 0.00% Amr::initSubcycle() 1 8.18e-06 1.153e-05 1.492e-05 0.00% Gravity::set_mass_offset() 10 6.934e-06 7.776e-06 8.733e-06 0.00% Castro::FluxRegFineAdd() 10 5.22e-06 5.919e-06 6.863e-06 0.00% Castro::retry_advance_ctu() 10 4.761e-06 5.825e-06 6.705e-06 0.00% DistributionMapping::Distribute() 1 1.095e-06 1.264e-06 1.51e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.03) finalized