MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.03-10-gfbdfc840de7c) initialized Starting run at 06:31:05 UTC on 2022-03-10. Successfully read inputs file ... Castro git describe: 22.02-4-g0d942c92d AMReX git describe: 22.03-10-gfbdfc840d Microphysics git describe: 22.03-2-ge2419c42 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01332221 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.348575424 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.362183188 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.31160965 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.309664328 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.309679217 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.335332198 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.29460594 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.28833256 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.288755876 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.287930874 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009665052 seconds Ending run at 06:31:09 UTC on 2022-03-10. Run time = 3.369118065 Run time without initialization = 3.171399573 Average number of zones advanced per microsecond: 0.827 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.369 ... 3.369 ... 3.369 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1430 2.1729 2.2113 65.63% Gravity::make_radial_gravity() 21 0.3481 0.3587 0.3782 11.23% Castro::initData() 1 0.03951 0.08713 0.1354 4.02% Castro::estTimeStep() 21 0.03436 0.07746 0.1155 3.43% MultiFab::min() 10 0.0333 0.07665 0.109 3.24% FabArray::setVal() 143 0.06389 0.0691 0.07573 2.25% FabArray::ParallelCopy_finish() 41 0.03448 0.04406 0.07309 2.17% Castro::reset_internal_energy() 63 0.04871 0.05016 0.05224 1.55% StateData::FillBoundary(geom) 41 0.03871 0.04172 0.04459 1.32% FabArray::ParallelCopy_nowait() 41 0.03477 0.04075 0.04292 1.27% Castro::normalize_species() 62 0.03261 0.03323 0.03418 1.01% FillPatchIterator::Initialize 41 0.02327 0.03061 0.03383 1.00% Amr::writePlotFile() 2 0.03019 0.03271 0.0335 0.99% Gravity::interpolate_monopole_grav() 21 0.02736 0.02809 0.029 0.86% Castro::construct_new_gravity_source() 10 0.02221 0.02421 0.02859 0.85% Castro::do_advance_ctu() 10 0.01427 0.01952 0.02381 0.71% Castro::expand_state() 10 0.01145 0.01845 0.02132 0.63% Castro::computeTemp() 63 0.01762 0.01891 0.0202 0.60% Castro::initialize_do_advance() 10 0.01044 0.0163 0.0183 0.54% MultiFab::Saxpy() 20 0.01309 0.01464 0.01609 0.48% VisMF::Write(FabArray) 2 0.01175 0.01263 0.01498 0.44% Castro::initialize_advance() 10 0.008683 0.01164 0.01449 0.43% Gravity::get_new_grav_vector() 11 0.01014 0.01115 0.01338 0.40% MultiFab::contains_nan() 20 0.01057 0.01121 0.01222 0.36% Castro::construct_old_gravity_source() 10 0.008284 0.01109 0.01196 0.36% FabArray::setDomainBndry() 41 0.006848 0.01028 0.01152 0.34% Gravity::get_old_grav_vector() 10 0.006942 0.009066 0.01085 0.32% Amr::defBaseLevel() 1 0.006656 0.00773 0.01024 0.30% Castro::enforce_min_density() 62 0.006421 0.006822 0.007221 0.21% Castro::construct_new_source() 50 0.005649 0.006209 0.00651 0.19% StateData::define() 4 0.004348 0.004946 0.006363 0.19% Castro::swap_state_time_levels() 10 0.002799 0.003593 0.004159 0.12% main() 1 0.003544 0.003792 0.003973 0.12% Amr::coarseTimeStep() 10 0.0003923 0.0007207 0.001184 0.04% Castro::finalize_do_advance() 10 0.0003786 0.0007934 0.0009123 0.03% Amr::InitAmr() 1 0.0002907 0.0003569 0.0004741 0.01% Amr::timeStep() 10 0.0001654 0.0002278 0.000449 0.01% DistributionMapping::LeastUsedCPUs() 1 9.926e-06 0.0001426 0.0002118 0.01% Castro::clean_state() 62 0.000132 0.0001375 0.0001444 0.00% Castro::enforce_consistent_e() 1 7.844e-05 9.908e-05 0.0001351 0.00% StateDataPhysBCFunct::() 41 0.0001115 0.0001236 0.0001322 0.00% Castro::construct_old_source() 50 5.228e-05 7.106e-05 9.2e-05 0.00% Amr::writeSmallPlotFile() 1 2.762e-05 5.562e-05 7.379e-05 0.00% Castro::subcycle_advance_ctu() 10 4.166e-05 5.914e-05 7.25e-05 0.00% FabArrayBase::getCPC() 41 4.741e-05 5.74e-05 7.054e-05 0.00% FillPatchSingleLevel 41 5.637e-05 6.179e-05 7.015e-05 0.00% FabArray::ParallelCopy() 41 5.624e-05 6.134e-05 6.92e-05 0.00% Castro::do_old_sources() 10 4.769e-05 5.587e-05 6.919e-05 0.00% Amr::FinalizeInit() 1 3.905e-06 1.259e-05 6.766e-05 0.00% Castro::do_new_sources() 10 4.611e-05 5.553e-05 6.302e-05 0.00% Castro::finalize_advance() 10 5.259e-05 5.673e-05 6.163e-05 0.00% Castro::construct_old_gravity() 10 4.28e-05 5.021e-05 5.533e-05 0.00% Castro::construct_new_gravity() 10 3.582e-05 4.169e-05 4.833e-05 0.00% Castro::apply_source_to_state() 20 3.736e-05 4.236e-05 4.7e-05 0.00% Castro::advance() 10 3.286e-05 3.694e-05 4.056e-05 0.00% Castro::enforce_speed_limit() 62 2.783e-05 3.301e-05 3.669e-05 0.00% FabArrayBase::CPC::define() 2 2.367e-05 2.604e-05 2.901e-05 0.00% Castro::check_for_nan() 20 2.149e-05 2.483e-05 2.658e-05 0.00% Gravity::set_mass_offset() 10 7.224e-06 9.652e-06 1.919e-05 0.00% Castro::create_source_corrector() 10 1.429e-05 1.724e-05 1.832e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.225e-06 1.031e-05 1.578e-05 0.00% Amr::initSubcycle() 1 8.56e-06 1.058e-05 1.532e-05 0.00% Gravity::swapTimeLevels() 10 9.714e-06 1.212e-05 1.316e-05 0.00% Castro::post_timestep() 10 7.903e-06 9.416e-06 1.087e-05 0.00% Castro::computeNewDt() 9 7.631e-06 8.531e-06 1.082e-05 0.00% Castro::post_init() 1 3.086e-06 4.838e-06 1.069e-05 0.00% Amr::InitializeInit() 1 1.858e-06 3.551e-06 8.044e-06 0.00% Castro::FluxRegFineAdd() 10 6.18e-06 6.777e-06 7.697e-06 0.00% Castro::retry_advance_ctu() 10 4.992e-06 5.746e-06 6.629e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.866e-06 5.056e-06 6.52e-06 0.00% Castro::post_regrid() 1 2.399e-06 3.631e-06 5.871e-06 0.00% Castro::computeInitialDt() 2 3.679e-06 4.331e-06 4.884e-06 0.00% Amr::init() 1 1.878e-06 2.23e-06 2.795e-06 0.00% Amr::initialInit() 1 1.24e-06 1.735e-06 2.445e-06 0.00% DistributionMapping::Distribute() 1 9.11e-07 1.296e-06 1.503e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.369 3.369 3.369 100.00% Amr::coarseTimeStep() 10 3.136 3.136 3.136 93.08% Amr::timeStep() 10 3.125 3.125 3.127 92.81% Castro::advance() 10 3.11 3.111 3.111 92.33% Castro::subcycle_advance_ctu() 10 3.034 3.039 3.043 90.33% Castro::do_advance_ctu() 10 3.034 3.038 3.043 90.33% Castro::construct_ctu_hydro_source() 10 2.143 2.173 2.211 65.63% Gravity::make_radial_gravity() 21 0.3481 0.3587 0.3782 11.23% Gravity::get_new_grav_vector() 11 0.2326 0.2342 0.2355 6.99% Castro::construct_old_gravity() 10 0.2037 0.2108 0.2286 6.79% Gravity::get_old_grav_vector() 10 0.2028 0.21 0.228 6.77% Castro::construct_new_gravity() 10 0.2073 0.2081 0.2091 6.21% Amr::init() 1 0.1971 0.1972 0.1973 5.86% Amr::initialInit() 1 0.1832 0.1836 0.1839 5.46% FillPatchIterator::Initialize 41 0.1629 0.1677 0.177 5.25% Castro::initialize_do_advance() 10 0.1451 0.1534 0.1582 4.70% Amr::InitializeInit() 1 0.05674 0.1062 0.1542 4.58% Amr::defBaseLevel() 1 0.05673 0.1062 0.1542 4.58% FillPatchSingleLevel 41 0.1197 0.1269 0.1469 4.36% Castro::initData() 1 0.04323 0.09125 0.1392 4.13% Amr::FinalizeInit() 1 0.02978 0.0774 0.127 3.77% Castro::estTimeStep() 21 0.03436 0.07746 0.1155 3.43% Castro::clean_state() 62 0.1053 0.1082 0.1122 3.33% Castro::expand_state() 10 0.1054 0.1088 0.1121 3.33% MultiFab::min() 10 0.0333 0.07665 0.109 3.24% FabArray::ParallelCopy() 41 0.07754 0.08495 0.108 3.21% Castro::computeInitialDt() 2 0.001817 0.04974 0.09913 2.94% Castro::initialize_advance() 10 0.06656 0.07192 0.07615 2.26% FabArray::setVal() 143 0.06389 0.0691 0.07573 2.25% FabArray::ParallelCopy_finish() 41 0.03448 0.04406 0.07309 2.17% Castro::computeTemp() 63 0.06675 0.06906 0.07199 2.14% Castro::do_new_sources() 10 0.05766 0.06154 0.06974 2.07% Castro::reset_internal_energy() 63 0.04871 0.05016 0.05224 1.55% Castro::do_old_sources() 10 0.04202 0.04584 0.04836 1.44% Amr::writePlotFile() 2 0.04504 0.04534 0.04564 1.35% StateDataPhysBCFunct::() 41 0.03884 0.04184 0.04472 1.33% StateData::FillBoundary(geom) 41 0.03871 0.04172 0.04459 1.32% FabArray::ParallelCopy_nowait() 41 0.03487 0.04083 0.043 1.28% Castro::construct_new_source() 50 0.02822 0.03041 0.0351 1.04% Castro::normalize_species() 62 0.03261 0.03323 0.03418 1.01% Gravity::interpolate_monopole_grav() 21 0.02736 0.02809 0.029 0.86% Castro::construct_new_gravity_source() 10 0.02221 0.02421 0.02859 0.85% Castro::post_init() 1 0.02657 0.02711 0.02736 0.81% Castro::apply_source_to_state() 20 0.01313 0.01469 0.01614 0.48% MultiFab::Saxpy() 20 0.01309 0.01464 0.01609 0.48% Castro::post_timestep() 10 0.01385 0.01465 0.01599 0.47% VisMF::Write(FabArray) 2 0.01175 0.01263 0.01498 0.44% Castro::check_for_nan() 20 0.01059 0.01123 0.01224 0.36% MultiFab::contains_nan() 20 0.01057 0.01121 0.01222 0.36% Castro::construct_old_source() 50 0.008336 0.01116 0.01205 0.36% Castro::construct_old_gravity_source() 10 0.008284 0.01109 0.01196 0.36% FabArray::setDomainBndry() 41 0.006848 0.01028 0.01152 0.34% Castro::computeNewDt() 9 0.007295 0.00871 0.009624 0.29% Castro::enforce_min_density() 62 0.006421 0.006822 0.007221 0.21% AmrLevel::AmrLevel(dm) 1 0.004357 0.004956 0.006379 0.19% StateData::define() 4 0.004348 0.004946 0.006363 0.19% Castro::swap_state_time_levels() 10 0.002799 0.003593 0.004159 0.12% Castro::post_regrid() 1 0.001383 0.001515 0.001765 0.05% Castro::finalize_do_advance() 10 0.0003786 0.0007934 0.0009123 0.03% Amr::InitAmr() 1 0.0002997 0.0003674 0.0004895 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.613e-05 0.000149 0.0002195 0.01% DistributionMapping::LeastUsedCPUs() 1 9.926e-06 0.0001426 0.0002118 0.01% Castro::enforce_consistent_e() 1 7.844e-05 9.908e-05 0.0001351 0.00% FabArrayBase::getCPC() 41 7.262e-05 8.344e-05 9.939e-05 0.00% Amr::writeSmallPlotFile() 1 2.762e-05 5.562e-05 7.379e-05 0.00% Castro::finalize_advance() 10 5.971e-05 6.351e-05 6.831e-05 0.00% Castro::enforce_speed_limit() 62 2.783e-05 3.301e-05 3.669e-05 0.00% FabArrayBase::CPC::define() 2 2.367e-05 2.604e-05 2.901e-05 0.00% Gravity::set_mass_offset() 10 7.224e-06 9.652e-06 1.919e-05 0.00% Castro::create_source_corrector() 10 1.429e-05 1.724e-05 1.832e-05 0.00% Amr::initSubcycle() 1 8.56e-06 1.058e-05 1.532e-05 0.00% Gravity::swapTimeLevels() 10 9.714e-06 1.212e-05 1.316e-05 0.00% Castro::FluxRegFineAdd() 10 6.18e-06 6.777e-06 7.697e-06 0.00% Castro::retry_advance_ctu() 10 4.992e-06 5.746e-06 6.629e-06 0.00% DistributionMapping::Distribute() 1 9.11e-07 1.296e-06 1.503e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.03-10-gfbdfc840de7c) finalized