MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.03-16-gdfb0e098df46) initialized Starting run at 05:36:54 UTC on 2022-03-17. Successfully read inputs file ... Castro git describe: 22.02-13-ga12efaab3 AMReX git describe: 22.03-16-gdfb0e098d Microphysics git describe: 22.03-8-g75721f58 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012500688 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.339189062 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.327527681 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.311614195 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.312170119 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.308445617 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.329824253 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.296894189 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.288602004 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.290499482 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.293034261 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009652426 seconds Ending run at 05:36:57 UTC on 2022-03-17. Run time = 3.289646558 Run time without initialization = 3.110749612 Average number of zones advanced per microsecond: 0.843 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.288 ... 3.289 ... 3.29 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1115 2.1651 2.2167 67.38% Gravity::make_radial_gravity() 21 0.326 0.3373 0.3578 10.88% MultiFab::min() 10 0.02944 0.07965 0.1349 4.10% Castro::initData() 1 0.0376 0.08132 0.1217 3.70% Castro::estTimeStep() 21 0.02655 0.06501 0.1139 3.46% FabArray::ParallelCopy_finish() 41 0.03108 0.04192 0.07694 2.34% FabArray::setVal() 143 0.05945 0.06911 0.07487 2.28% Castro::reset_internal_energy() 63 0.04681 0.04968 0.05271 1.60% StateData::FillBoundary(geom) 41 0.03917 0.04122 0.0455 1.38% FabArray::ParallelCopy_nowait() 41 0.0333 0.03921 0.04157 1.26% Castro::normalize_species() 62 0.03258 0.03304 0.0338 1.03% FillPatchIterator::Initialize 41 0.02225 0.02834 0.03161 0.96% Gravity::interpolate_monopole_grav() 21 0.02752 0.0278 0.02794 0.85% Castro::construct_new_gravity_source() 10 0.01949 0.02339 0.02645 0.80% Castro::do_advance_ctu() 10 0.01385 0.01928 0.02269 0.69% Castro::expand_state() 10 0.01127 0.01805 0.02081 0.63% Castro::computeTemp() 63 0.01717 0.01871 0.02025 0.62% Castro::initialize_do_advance() 10 0.01009 0.01598 0.0176 0.53% MultiFab::Saxpy() 20 0.01239 0.01455 0.01566 0.48% VisMF::Write(FabArray) 2 0.01118 0.012 0.01407 0.43% Castro::initialize_advance() 10 0.008462 0.01155 0.01371 0.42% Gravity::get_new_grav_vector() 11 0.009285 0.01065 0.01294 0.39% MultiFab::contains_nan() 20 0.01009 0.01118 0.01245 0.38% Castro::construct_old_gravity_source() 10 0.007095 0.01085 0.01188 0.36% Amr::writePlotFile() 2 0.008316 0.01036 0.01139 0.35% FabArray::setDomainBndry() 41 0.006993 0.009336 0.01094 0.33% Amr::defBaseLevel() 1 0.006394 0.007491 0.01009 0.31% Gravity::get_old_grav_vector() 10 0.006692 0.008665 0.01007 0.31% Castro::construct_new_source() 50 0.005682 0.00629 0.006656 0.20% Castro::enforce_min_density() 62 0.005678 0.006111 0.006442 0.20% StateData::define() 4 0.004318 0.004938 0.006387 0.19% main() 1 0.003193 0.003987 0.004525 0.14% Castro::swap_state_time_levels() 10 0.002356 0.003438 0.003763 0.11% Amr::coarseTimeStep() 10 0.0003321 0.000637 0.00146 0.04% Castro::finalize_do_advance() 10 0.0004635 0.0009054 0.001059 0.03% Amr::InitAmr() 1 0.000262 0.000326 0.0005705 0.02% Amr::timeStep() 10 0.0001565 0.0002251 0.0004736 0.01% DistributionMapping::LeastUsedCPUs() 1 9.333e-06 0.0003168 0.0004 0.01% Castro::clean_state() 62 0.000136 0.0001536 0.0001664 0.01% StateDataPhysBCFunct::() 41 0.0001126 0.0001257 0.0001331 0.00% Castro::construct_old_source() 50 5.59e-05 7.833e-05 9.297e-05 0.00% Castro::enforce_consistent_e() 1 7.478e-05 8.406e-05 9.141e-05 0.00% Amr::FinalizeInit() 1 4.118e-06 1.51e-05 8.829e-05 0.00% Castro::do_old_sources() 10 4.508e-05 6.471e-05 8.111e-05 0.00% FabArray::ParallelCopy() 41 6.282e-05 6.983e-05 7.91e-05 0.00% Amr::writeSmallPlotFile() 1 2.595e-05 5.166e-05 7.361e-05 0.00% Castro::subcycle_advance_ctu() 10 3.884e-05 5.2e-05 6.728e-05 0.00% FillPatchSingleLevel 41 5.955e-05 6.261e-05 6.669e-05 0.00% Castro::do_new_sources() 10 5.313e-05 5.96e-05 6.483e-05 0.00% FabArrayBase::getCPC() 41 5.055e-05 5.583e-05 6.282e-05 0.00% Castro::construct_old_gravity() 10 4.858e-05 5.48e-05 6.274e-05 0.00% Castro::apply_source_to_state() 20 3.807e-05 4.757e-05 5.962e-05 0.00% Castro::construct_new_gravity() 10 3.791e-05 4.625e-05 5.932e-05 0.00% Castro::finalize_advance() 10 4.869e-05 5.303e-05 5.588e-05 0.00% Castro::advance() 10 3.604e-05 3.9e-05 4.102e-05 0.00% Castro::enforce_speed_limit() 62 2.639e-05 3.319e-05 3.928e-05 0.00% Castro::check_for_nan() 20 2.221e-05 2.574e-05 3.232e-05 0.00% FabArrayBase::CPC::define() 2 2.155e-05 2.613e-05 3.018e-05 0.00% Castro::create_source_corrector() 10 1.327e-05 1.806e-05 2.451e-05 0.00% Gravity::swapTimeLevels() 10 1.096e-05 1.314e-05 1.607e-05 0.00% Amr::initSubcycle() 1 8.287e-06 1.05e-05 1.52e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.259e-06 8.358e-06 1.106e-05 0.00% Castro::post_timestep() 10 8.444e-06 9.528e-06 1.068e-05 0.00% Gravity::set_mass_offset() 10 6.796e-06 7.903e-06 8.726e-06 0.00% Amr::InitializeInit() 1 1.878e-06 3.061e-06 8.612e-06 0.00% Castro::computeNewDt() 9 6.97e-06 7.52e-06 8.222e-06 0.00% Castro::FluxRegFineAdd() 10 5.881e-06 6.435e-06 7.604e-06 0.00% Castro::retry_advance_ctu() 10 4.68e-06 5.724e-06 6.418e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.518e-06 4.326e-06 5.469e-06 0.00% Castro::post_regrid() 1 1.959e-06 3.314e-06 4.96e-06 0.00% Castro::computeInitialDt() 2 3.147e-06 3.732e-06 4.616e-06 0.00% Castro::post_init() 1 3.073e-06 3.626e-06 4.315e-06 0.00% Amr::init() 1 1.663e-06 2.232e-06 2.834e-06 0.00% Amr::initialInit() 1 1.054e-06 1.596e-06 2.199e-06 0.00% DistributionMapping::Distribute() 1 8.96e-07 1.121e-06 1.542e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.288 3.289 3.29 100.00% Amr::coarseTimeStep() 10 3.097 3.097 3.097 94.13% Amr::timeStep() 10 3.086 3.086 3.087 93.84% Castro::advance() 10 3.071 3.072 3.072 93.38% Castro::subcycle_advance_ctu() 10 2.997 3.001 3.011 91.52% Castro::do_advance_ctu() 10 2.997 3.001 3.011 91.52% Castro::construct_ctu_hydro_source() 10 2.111 2.165 2.217 67.38% Gravity::make_radial_gravity() 21 0.326 0.3373 0.3578 10.88% Gravity::get_new_grav_vector() 11 0.2161 0.2186 0.2205 6.70% Castro::construct_old_gravity() 10 0.1944 0.202 0.2196 6.67% Gravity::get_old_grav_vector() 10 0.1936 0.2013 0.219 6.66% Castro::construct_new_gravity() 10 0.1937 0.1957 0.1971 5.99% FillPatchIterator::Initialize 41 0.1514 0.1604 0.1805 5.49% Amr::init() 1 0.1781 0.1784 0.1785 5.43% Amr::initialInit() 1 0.1654 0.1658 0.166 5.05% Castro::initialize_do_advance() 10 0.1441 0.1504 0.1556 4.73% FillPatchSingleLevel 41 0.1151 0.1227 0.1513 4.60% Amr::InitializeInit() 1 0.05489 0.0999 0.1398 4.25% Amr::defBaseLevel() 1 0.05489 0.0999 0.1398 4.25% MultiFab::min() 10 0.02944 0.07965 0.1349 4.10% Castro::initData() 1 0.04135 0.08499 0.1251 3.80% Castro::estTimeStep() 21 0.02655 0.06501 0.1139 3.46% Castro::clean_state() 62 0.1018 0.1068 0.1124 3.42% Castro::expand_state() 10 0.09898 0.1064 0.1113 3.38% Amr::FinalizeInit() 1 0.02577 0.06587 0.111 3.38% FabArray::ParallelCopy() 41 0.07281 0.08129 0.1104 3.36% Castro::computeInitialDt() 2 0.00163 0.04151 0.08659 2.63% FabArray::ParallelCopy_finish() 41 0.03108 0.04192 0.07694 2.34% FabArray::setVal() 143 0.05945 0.06911 0.07487 2.28% Castro::initialize_advance() 10 0.06049 0.07093 0.07447 2.26% Castro::computeTemp() 63 0.06398 0.06839 0.07296 2.22% Castro::do_new_sources() 10 0.0551 0.06127 0.06823 2.07% Castro::reset_internal_energy() 63 0.04681 0.04968 0.05271 1.60% Castro::do_old_sources() 10 0.03878 0.0453 0.04788 1.46% StateDataPhysBCFunct::() 41 0.03929 0.04135 0.04564 1.39% StateData::FillBoundary(geom) 41 0.03917 0.04122 0.0455 1.38% FabArray::ParallelCopy_nowait() 41 0.03339 0.0393 0.04166 1.27% Castro::normalize_species() 62 0.03258 0.03304 0.0338 1.03% Castro::construct_new_source() 50 0.02518 0.02968 0.03304 1.00% Gravity::interpolate_monopole_grav() 21 0.02752 0.0278 0.02794 0.85% Castro::construct_new_gravity_source() 10 0.01949 0.02339 0.02645 0.80% Castro::post_init() 1 0.02369 0.02385 0.024 0.73% Amr::writePlotFile() 2 0.02217 0.02235 0.02257 0.69% Castro::apply_source_to_state() 20 0.01243 0.0146 0.01571 0.48% MultiFab::Saxpy() 20 0.01239 0.01455 0.01566 0.48% Castro::post_timestep() 10 0.01402 0.0145 0.01509 0.46% VisMF::Write(FabArray) 2 0.01118 0.012 0.01407 0.43% Castro::check_for_nan() 20 0.01011 0.01121 0.01248 0.38% MultiFab::contains_nan() 20 0.01009 0.01118 0.01245 0.38% Castro::construct_old_source() 50 0.007151 0.01093 0.01196 0.36% Castro::construct_old_gravity_source() 10 0.007095 0.01085 0.01188 0.36% FabArray::setDomainBndry() 41 0.006993 0.009336 0.01094 0.33% Castro::computeNewDt() 9 0.007478 0.008641 0.009513 0.29% Castro::enforce_min_density() 62 0.005678 0.006111 0.006442 0.20% AmrLevel::AmrLevel(dm) 1 0.004326 0.004946 0.006398 0.19% StateData::define() 4 0.004318 0.004938 0.006387 0.19% Castro::swap_state_time_levels() 10 0.002356 0.003438 0.003763 0.11% Castro::post_regrid() 1 0.001388 0.001444 0.001495 0.05% Castro::finalize_do_advance() 10 0.0004635 0.0009054 0.001059 0.03% Amr::InitAmr() 1 0.0002712 0.0003365 0.0005857 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.488e-05 0.0003222 0.0004066 0.01% DistributionMapping::LeastUsedCPUs() 1 9.333e-06 0.0003168 0.0004 0.01% Castro::enforce_consistent_e() 1 7.478e-05 8.406e-05 9.141e-05 0.00% FabArrayBase::getCPC() 41 7.227e-05 8.197e-05 9.138e-05 0.00% Amr::writeSmallPlotFile() 1 2.595e-05 5.166e-05 7.361e-05 0.00% Castro::finalize_advance() 10 5.475e-05 5.946e-05 6.182e-05 0.00% Castro::enforce_speed_limit() 62 2.639e-05 3.319e-05 3.928e-05 0.00% FabArrayBase::CPC::define() 2 2.155e-05 2.613e-05 3.018e-05 0.00% Castro::create_source_corrector() 10 1.327e-05 1.806e-05 2.451e-05 0.00% Gravity::swapTimeLevels() 10 1.096e-05 1.314e-05 1.607e-05 0.00% Amr::initSubcycle() 1 8.287e-06 1.05e-05 1.52e-05 0.00% Gravity::set_mass_offset() 10 6.796e-06 7.903e-06 8.726e-06 0.00% Castro::FluxRegFineAdd() 10 5.881e-06 6.435e-06 7.604e-06 0.00% Castro::retry_advance_ctu() 10 4.68e-06 5.724e-06 6.418e-06 0.00% DistributionMapping::Distribute() 1 8.96e-07 1.121e-06 1.542e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.03-16-gdfb0e098df46) finalized