MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.03-16-gdfb0e098df46) initialized Starting run at 05:36:44 UTC on 2022-03-18. Successfully read inputs file ... Castro git describe: 22.02-13-ga12efaab3 AMReX git describe: 22.03-16-gdfb0e098d Microphysics git describe: 22.03-8-g75721f58 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012644938 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.330583961 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.326535334 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.314148445 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.313586435 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.314129563 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339588412 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.299651104 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.292756572 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.292053528 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.29119369 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009279391 seconds Ending run at 05:36:47 UTC on 2022-03-18. Run time = 3.302266788 Run time without initialization = 3.127491933 Average number of zones advanced per microsecond: 0.838 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.302 ... 3.302 ... 3.302 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1127 2.1699 2.2405 67.85% Gravity::make_radial_gravity() 21 0.33 0.3449 0.3714 11.25% MultiFab::min() 10 0.003566 0.07837 0.14 4.24% Castro::initData() 1 0.03822 0.07874 0.1174 3.56% Castro::estTimeStep() 21 0.02014 0.06315 0.09941 3.01% FabArray::ParallelCopy_finish() 41 0.03324 0.04493 0.09018 2.73% FabArray::setVal() 143 0.05231 0.06781 0.07476 2.26% Castro::reset_internal_energy() 63 0.04841 0.05016 0.05273 1.60% StateData::FillBoundary(geom) 41 0.03795 0.04211 0.04609 1.40% FabArray::ParallelCopy_nowait() 41 0.03357 0.04095 0.04364 1.32% Castro::normalize_species() 62 0.03207 0.03329 0.03362 1.02% FillPatchIterator::Initialize 41 0.02221 0.03024 0.03306 1.00% Gravity::interpolate_monopole_grav() 21 0.02766 0.02799 0.02829 0.86% Castro::construct_new_gravity_source() 10 0.0205 0.02363 0.02607 0.79% Castro::do_advance_ctu() 10 0.01309 0.01905 0.02316 0.70% Castro::expand_state() 10 0.01014 0.01841 0.022 0.67% Castro::computeTemp() 63 0.01803 0.01892 0.02006 0.61% Castro::initialize_do_advance() 10 0.01003 0.01594 0.01748 0.53% MultiFab::Saxpy() 20 0.01264 0.01452 0.01588 0.48% VisMF::Write(FabArray) 2 0.01133 0.01197 0.01476 0.45% Gravity::get_new_grav_vector() 11 0.009581 0.01101 0.01309 0.40% Castro::initialize_advance() 10 0.003838 0.01019 0.01304 0.39% MultiFab::contains_nan() 20 0.01012 0.01109 0.01236 0.37% Castro::construct_old_gravity_source() 10 0.007162 0.01082 0.01171 0.35% FabArray::setDomainBndry() 41 0.006496 0.0101 0.01157 0.35% Amr::writePlotFile() 2 0.007405 0.009954 0.0107 0.32% Gravity::get_old_grav_vector() 10 0.006718 0.009076 0.01049 0.32% Amr::defBaseLevel() 1 0.006645 0.006962 0.007584 0.23% Castro::construct_new_source() 50 0.005748 0.00633 0.006548 0.20% Castro::enforce_min_density() 62 0.005727 0.006062 0.006394 0.19% StateData::define() 4 0.004271 0.0045 0.004726 0.14% main() 1 0.003589 0.003878 0.004142 0.13% Castro::swap_state_time_levels() 10 0.001668 0.003469 0.003753 0.11% Amr::coarseTimeStep() 10 0.0004123 0.0006637 0.001525 0.05% Castro::finalize_do_advance() 10 0.0004575 0.0009555 0.001117 0.03% Amr::timeStep() 10 0.0001528 0.0002141 0.0004899 0.01% Amr::InitAmr() 1 0.0002751 0.0003037 0.0004232 0.01% DistributionMapping::LeastUsedCPUs() 1 6.597e-06 0.0001418 0.0001734 0.01% Castro::clean_state() 62 0.0001324 0.0001476 0.0001673 0.01% StateDataPhysBCFunct::() 41 0.0001177 0.0001301 0.0001383 0.00% Castro::enforce_consistent_e() 1 7.432e-05 8.584e-05 9.21e-05 0.00% FabArray::ParallelCopy() 41 6.522e-05 7.303e-05 8.922e-05 0.00% Castro::construct_old_source() 50 5.771e-05 7.747e-05 8.49e-05 0.00% FillPatchSingleLevel 41 5.676e-05 6.64e-05 7.745e-05 0.00% FabArrayBase::getCPC() 41 5.048e-05 6.143e-05 7.581e-05 0.00% Castro::subcycle_advance_ctu() 10 4.563e-05 5.83e-05 7.074e-05 0.00% Castro::advance() 10 3.909e-05 4.478e-05 6.76e-05 0.00% Castro::do_old_sources() 10 4.348e-05 5.885e-05 6.695e-05 0.00% Castro::do_new_sources() 10 5.32e-05 6.143e-05 6.636e-05 0.00% Amr::FinalizeInit() 1 3.207e-06 1.203e-05 6.619e-05 0.00% Castro::construct_old_gravity() 10 4.589e-05 5.443e-05 6.413e-05 0.00% Amr::writeSmallPlotFile() 1 3.403e-05 5.235e-05 6.361e-05 0.00% Castro::construct_new_gravity() 10 3.922e-05 4.873e-05 6.258e-05 0.00% Castro::apply_source_to_state() 20 4.054e-05 5.243e-05 6.072e-05 0.00% Castro::finalize_advance() 10 4.911e-05 5.328e-05 6.011e-05 0.00% FabArrayBase::CPC::define() 2 2.161e-05 2.767e-05 4.133e-05 0.00% Castro::enforce_speed_limit() 62 2.848e-05 3.361e-05 3.607e-05 0.00% Castro::check_for_nan() 20 2.109e-05 2.453e-05 2.936e-05 0.00% Castro::create_source_corrector() 10 1.295e-05 1.777e-05 2.181e-05 0.00% Gravity::swapTimeLevels() 10 1.157e-05 1.376e-05 1.717e-05 0.00% Castro::post_timestep() 10 8.77e-06 9.619e-06 1.076e-05 0.00% Amr::initSubcycle() 1 8.388e-06 9.203e-06 9.848e-06 0.00% Gravity::set_mass_offset() 10 6.774e-06 7.99e-06 9.455e-06 0.00% AmrLevel::AmrLevel(dm) 1 7.806e-06 8.267e-06 8.871e-06 0.00% Castro::post_init() 1 2.552e-06 4.255e-06 8.6e-06 0.00% Castro::computeNewDt() 9 6.899e-06 7.523e-06 7.807e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.798e-06 4.696e-06 7.624e-06 0.00% Castro::FluxRegFineAdd() 10 5.841e-06 6.575e-06 7.622e-06 0.00% Castro::post_regrid() 1 1.779e-06 3.497e-06 7.293e-06 0.00% Castro::retry_advance_ctu() 10 5.092e-06 5.987e-06 7.121e-06 0.00% Amr::InitializeInit() 1 2.139e-06 2.795e-06 6.654e-06 0.00% Castro::computeInitialDt() 2 2.736e-06 3.606e-06 5.87e-06 0.00% Amr::init() 1 1.701e-06 2e-06 2.615e-06 0.00% Amr::initialInit() 1 1.117e-06 1.385e-06 1.731e-06 0.00% DistributionMapping::Distribute() 1 9.88e-07 1.106e-06 1.446e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.302 3.302 3.302 100.00% Amr::coarseTimeStep() 10 3.114 3.114 3.114 94.30% Amr::timeStep() 10 3.105 3.105 3.106 94.05% Castro::advance() 10 3.09 3.091 3.091 93.60% Castro::subcycle_advance_ctu() 10 3.018 3.023 3.042 92.11% Castro::do_advance_ctu() 10 3.018 3.023 3.042 92.11% Castro::construct_ctu_hydro_source() 10 2.113 2.17 2.241 67.85% Gravity::make_radial_gravity() 21 0.33 0.3449 0.3714 11.25% Castro::construct_old_gravity() 10 0.1962 0.2067 0.2294 6.95% Gravity::get_old_grav_vector() 10 0.1954 0.206 0.2288 6.93% Gravity::get_new_grav_vector() 11 0.2213 0.2237 0.225 6.81% Castro::construct_new_gravity() 10 0.1998 0.2012 0.202 6.12% FillPatchIterator::Initialize 41 0.156 0.1687 0.1908 5.78% Amr::init() 1 0.1742 0.1743 0.1744 5.28% FillPatchSingleLevel 41 0.1152 0.1284 0.1621 4.91% Amr::initialInit() 1 0.1614 0.1618 0.162 4.90% Castro::initialize_do_advance() 10 0.1469 0.1552 0.1596 4.83% MultiFab::min() 10 0.003566 0.07837 0.14 4.24% Amr::InitializeInit() 1 0.05659 0.09695 0.1361 4.12% Amr::defBaseLevel() 1 0.05659 0.09694 0.1361 4.12% FabArray::ParallelCopy() 41 0.07493 0.08605 0.124 3.75% Castro::initData() 1 0.04165 0.08259 0.1208 3.66% Castro::expand_state() 10 0.1016 0.1107 0.1188 3.60% Castro::clean_state() 62 0.1045 0.1077 0.1117 3.38% Amr::FinalizeInit() 1 0.02565 0.06483 0.1053 3.19% Castro::estTimeStep() 21 0.02014 0.06315 0.09941 3.01% FabArray::ParallelCopy_finish() 41 0.03324 0.04493 0.09018 2.73% Castro::computeInitialDt() 2 0.001598 0.04071 0.08106 2.45% FabArray::setVal() 143 0.05231 0.06781 0.07476 2.26% Castro::computeTemp() 63 0.06644 0.06908 0.07279 2.20% Castro::initialize_advance() 10 0.04835 0.06771 0.07224 2.19% Castro::do_new_sources() 10 0.05561 0.06161 0.06769 2.05% Castro::reset_internal_energy() 63 0.04841 0.05016 0.05273 1.60% Castro::do_old_sources() 10 0.03895 0.04537 0.04718 1.43% StateDataPhysBCFunct::() 41 0.03807 0.04224 0.04622 1.40% StateData::FillBoundary(geom) 41 0.03795 0.04211 0.04609 1.40% FabArray::ParallelCopy_nowait() 41 0.03369 0.04104 0.04373 1.32% Castro::normalize_species() 62 0.03207 0.03329 0.03362 1.02% Castro::construct_new_source() 50 0.02625 0.02996 0.03262 0.99% Gravity::interpolate_monopole_grav() 21 0.02766 0.02799 0.02829 0.86% Castro::construct_new_gravity_source() 10 0.0205 0.02363 0.02607 0.79% Castro::post_init() 1 0.02332 0.02359 0.02372 0.72% Amr::writePlotFile() 2 0.02177 0.02192 0.02216 0.67% Castro::apply_source_to_state() 20 0.01268 0.01457 0.01594 0.48% MultiFab::Saxpy() 20 0.01264 0.01452 0.01588 0.48% VisMF::Write(FabArray) 2 0.01133 0.01197 0.01476 0.45% Castro::post_timestep() 10 0.01401 0.01436 0.0147 0.45% Castro::check_for_nan() 20 0.01014 0.01112 0.01238 0.37% MultiFab::contains_nan() 20 0.01012 0.01109 0.01236 0.37% Castro::construct_old_source() 50 0.00722 0.0109 0.01179 0.36% Castro::construct_old_gravity_source() 10 0.007162 0.01082 0.01171 0.35% FabArray::setDomainBndry() 41 0.006496 0.0101 0.01157 0.35% Castro::computeNewDt() 9 0.0067 0.007241 0.007811 0.24% Castro::enforce_min_density() 62 0.005727 0.006062 0.006394 0.19% AmrLevel::AmrLevel(dm) 1 0.00428 0.004508 0.004734 0.14% StateData::define() 4 0.004271 0.0045 0.004726 0.14% Castro::swap_state_time_levels() 10 0.001668 0.003469 0.003753 0.11% Castro::post_regrid() 1 0.001386 0.001437 0.001495 0.05% Castro::finalize_do_advance() 10 0.0004575 0.0009555 0.001117 0.03% Amr::InitAmr() 1 0.0002841 0.0003129 0.0004331 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.183e-05 0.0001476 0.0001797 0.01% DistributionMapping::LeastUsedCPUs() 1 6.597e-06 0.0001418 0.0001734 0.01% FabArrayBase::getCPC() 41 7.728e-05 8.91e-05 0.000115 0.00% Castro::enforce_consistent_e() 1 7.432e-05 8.584e-05 9.21e-05 0.00% Castro::finalize_advance() 10 5.646e-05 5.986e-05 6.624e-05 0.00% Amr::writeSmallPlotFile() 1 3.403e-05 5.235e-05 6.361e-05 0.00% FabArrayBase::CPC::define() 2 2.161e-05 2.767e-05 4.133e-05 0.00% Castro::enforce_speed_limit() 62 2.848e-05 3.361e-05 3.607e-05 0.00% Castro::create_source_corrector() 10 1.295e-05 1.777e-05 2.181e-05 0.00% Gravity::swapTimeLevels() 10 1.157e-05 1.376e-05 1.717e-05 0.00% Amr::initSubcycle() 1 8.388e-06 9.203e-06 9.848e-06 0.00% Gravity::set_mass_offset() 10 6.774e-06 7.99e-06 9.455e-06 0.00% Castro::FluxRegFineAdd() 10 5.841e-06 6.575e-06 7.622e-06 0.00% Castro::retry_advance_ctu() 10 5.092e-06 5.987e-06 7.121e-06 0.00% DistributionMapping::Distribute() 1 9.88e-07 1.106e-06 1.446e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.03-16-gdfb0e098df46) finalized