MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (22.03-36-g75e2e7d09e68) initialized
Starting run at 05:37:12 UTC on 2022-04-01.
Successfully read inputs file ...
Castro git describe: 22.02-19-ga92ac477d
AMReX git describe: 22.03-36-g75e2e7d09
Microphysics git describe: 22.03-14-g4f1304ed
reading extern runtime parameters ...
3 Species:
C12 O16 Mg24
Successfully read inputs file ...
INITIAL GRIDS
Level 0 8 grids 262144 cells 100 % of domain
smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32
PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.012739784 seconds
[Level 0 step 1] ADVANCE with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells
[STEP 1] Coarse TimeStep time: 0.333376335
[STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05
[Level 0 step 2] ADVANCE with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells
[STEP 2] Coarse TimeStep time: 0.329304729
[STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05
[Level 0 step 3] ADVANCE with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells
[STEP 3] Coarse TimeStep time: 0.316359784
[STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05
[Level 0 step 4] ADVANCE with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells
[STEP 4] Coarse TimeStep time: 0.31589222
[STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05
[Level 0 step 5] ADVANCE with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells
[STEP 5] Coarse TimeStep time: 0.315489261
[STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05
[Level 0 step 6] ADVANCE with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells
[STEP 6] Coarse TimeStep time: 0.343210248
[STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05
[Level 0 step 7] ADVANCE with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells
[STEP 7] Coarse TimeStep time: 0.30069655
[STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05
[Level 0 step 8] ADVANCE with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells
[STEP 8] Coarse TimeStep time: 0.292994613
[STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05
[Level 0 step 9] ADVANCE with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells
[STEP 9] Coarse TimeStep time: 0.292823511
[STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05
[Level 0 step 10] ADVANCE with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells
[STEP 10] Coarse TimeStep time: 0.293767678
[STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480]
STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05
PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.045729274 seconds
Ending run at 05:37:16 UTC on 2022-04-01.
Run time = 3.377393297
Run time without initialization = 3.183143155
Average number of zones advanced per microsecond: 0.824
Average number of zones advanced per microsecond per rank: 0.103
TinyProfiler total time across processes [min...avg...max]: 3.377 ... 3.377 ... 3.377
-------------------------------------------------------------------------------------------
Name NCalls Excl. Min Excl. Avg Excl. Max Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 10 2.1461 2.1850 2.2282 65.97%
Gravity::make_radial_gravity() 21 0.3345 0.3456 0.3553 10.52%
Castro::initData() 1 0.03988 0.08276 0.1343 3.98%
Castro::estTimeStep() 21 0.01748 0.07581 0.1214 3.59%
MultiFab::min() 10 0.01182 0.05789 0.09927 2.94%
FabArray::setVal() 143 0.07074 0.074 0.0775 2.29%
FabArray::ParallelCopy_finish() 41 0.03395 0.04092 0.05775 1.71%
Castro::reset_internal_energy() 63 0.04851 0.05017 0.05211 1.54%
Amr::writePlotFile() 2 0.04467 0.04664 0.04719 1.40%
StateData::FillBoundary(geom) 41 0.03923 0.04166 0.04533 1.34%
Castro::normalize_species() 62 0.04246 0.04365 0.04529 1.34%
FabArray::ParallelCopy_nowait() 41 0.04029 0.04216 0.04443 1.32%
FillPatchIterator::Initialize 41 0.02393 0.03169 0.03476 1.03%
Gravity::interpolate_monopole_grav() 21 0.02764 0.02804 0.0286 0.85%
Castro::construct_new_gravity_source() 10 0.02308 0.02473 0.02682 0.79%
Castro::do_advance_ctu() 10 0.01925 0.02131 0.02458 0.73%
Castro::expand_state() 10 0.01181 0.01843 0.02077 0.61%
Castro::computeTemp() 63 0.01837 0.01896 0.01986 0.59%
Castro::initialize_do_advance() 10 0.01266 0.01662 0.01867 0.55%
MultiFab::Saxpy() 20 0.01495 0.016 0.01663 0.49%
Castro::initialize_advance() 10 0.01074 0.01252 0.01456 0.43%
VisMF::Write(FabArray) 2 0.01146 0.01199 0.01402 0.42%
Gravity::get_new_grav_vector() 11 0.01033 0.01139 0.01357 0.40%
MultiFab::contains_nan() 20 0.01122 0.01212 0.01323 0.39%
Castro::construct_old_gravity_source() 10 0.009245 0.0116 0.01233 0.36%
FabArray::setDomainBndry() 41 0.006909 0.01045 0.0119 0.35%
Gravity::get_old_grav_vector() 10 0.008033 0.009371 0.01064 0.31%
Amr::defBaseLevel() 1 0.006606 0.007164 0.007682 0.23%
Castro::construct_new_source() 50 0.006406 0.006721 0.007013 0.21%
Castro::enforce_min_density() 62 0.005874 0.006174 0.006472 0.19%
StateData::define() 4 0.004345 0.004733 0.005092 0.15%
main() 1 0.003252 0.003695 0.00395 0.12%
Castro::swap_state_time_levels() 10 0.002935 0.003749 0.00389 0.12%
Amr::coarseTimeStep() 10 0.0003101 0.0005983 0.001195 0.04%
Castro::finalize_do_advance() 10 0.0004972 0.0008232 0.000928 0.03%
Amr::timeStep() 10 0.0001649 0.0002251 0.0004563 0.01%
Amr::InitAmr() 1 0.000258 0.0003067 0.0004267 0.01%
DistributionMapping::LeastUsedCPUs() 1 8.678e-06 0.0001279 0.0001855 0.01%
Castro::clean_state() 62 0.0001291 0.0001466 0.0001623 0.00%
StateDataPhysBCFunct::() 41 0.0001268 0.0001327 0.0001426 0.00%
Amr::FinalizeInit() 1 3.808e-06 1.834e-05 0.0001166 0.00%
Castro::enforce_consistent_e() 1 8.292e-05 8.843e-05 9.641e-05 0.00%
Castro::construct_old_source() 50 7.226e-05 8.446e-05 9.619e-05 0.00%
FillPatchSingleLevel 41 6.566e-05 7.091e-05 8.179e-05 0.00%
Castro::do_old_sources() 10 5.594e-05 6.597e-05 7.603e-05 0.00%
FabArray::ParallelCopy() 41 6.317e-05 7.042e-05 7.526e-05 0.00%
FabArrayBase::getCPC() 41 4.753e-05 5.807e-05 7.335e-05 0.00%
Amr::writeSmallPlotFile() 1 2.491e-05 4.525e-05 7.287e-05 0.00%
Castro::construct_old_gravity() 10 5.424e-05 6.134e-05 7.211e-05 0.00%
Castro::do_new_sources() 10 5.494e-05 6.189e-05 6.886e-05 0.00%
Castro::subcycle_advance_ctu() 10 4.009e-05 5.528e-05 6.839e-05 0.00%
Castro::construct_new_gravity() 10 3.718e-05 5.057e-05 6.333e-05 0.00%
Castro::apply_source_to_state() 20 4.508e-05 5.05e-05 5.824e-05 0.00%
Castro::finalize_advance() 10 4.757e-05 5.299e-05 5.666e-05 0.00%
Castro::advance() 10 3.442e-05 4.017e-05 4.501e-05 0.00%
AmrLevel::AmrLevel(dm) 1 1.386e-05 2.599e-05 3.762e-05 0.00%
Castro::enforce_speed_limit() 62 2.926e-05 3.218e-05 3.746e-05 0.00%
FabArrayBase::CPC::define() 2 2.29e-05 2.604e-05 3.304e-05 0.00%
Castro::check_for_nan() 20 2.477e-05 2.763e-05 3.191e-05 0.00%
Castro::post_init() 1 2.941e-06 6.906e-06 2.877e-05 0.00%
Castro::create_source_corrector() 10 1.324e-05 1.821e-05 2.438e-05 0.00%
Gravity::swapTimeLevels() 10 1.181e-05 1.434e-05 1.599e-05 0.00%
Amr::initSubcycle() 1 8.659e-06 9.72e-06 1.129e-05 0.00%
Amr::InitializeInit() 1 2.396e-06 4.582e-06 1.08e-05 0.00%
Castro::post_timestep() 10 8.792e-06 9.643e-06 1.019e-05 0.00%
Gravity::set_mass_offset() 10 7.357e-06 8.072e-06 9.591e-06 0.00%
Castro::computeNewDt() 9 6.907e-06 7.727e-06 9.232e-06 0.00%
Castro::FluxRegFineAdd() 10 5.051e-06 6.487e-06 7.659e-06 0.00%
Castro::retry_advance_ctu() 10 4.989e-06 6.267e-06 7.445e-06 0.00%
DistributionMapping::SFCProcessorMapDoIt() 1 4.216e-06 4.64e-06 5.667e-06 0.00%
Castro::computeInitialDt() 2 2.739e-06 3.958e-06 5.084e-06 0.00%
Castro::post_regrid() 1 1.662e-06 2.63e-06 3.832e-06 0.00%
Amr::init() 1 1.857e-06 2.25e-06 2.471e-06 0.00%
Amr::initialInit() 1 1.352e-06 1.719e-06 2.017e-06 0.00%
DistributionMapping::Distribute() 1 9.17e-07 1.055e-06 1.388e-06 0.00%
-------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------
Name NCalls Incl. Min Incl. Avg Incl. Max Max %
-------------------------------------------------------------------------------------------
main() 1 3.377 3.377 3.377 100.00%
Amr::coarseTimeStep() 10 3.134 3.134 3.134 92.78%
Amr::timeStep() 10 3.124 3.124 3.125 92.52%
Castro::advance() 10 3.108 3.108 3.108 92.03%
Castro::subcycle_advance_ctu() 10 3.029 3.031 3.034 89.84%
Castro::do_advance_ctu() 10 3.029 3.031 3.034 89.84%
Castro::construct_ctu_hydro_source() 10 2.146 2.185 2.228 65.97%
Gravity::make_radial_gravity() 21 0.3345 0.3456 0.3553 10.52%
Gravity::get_new_grav_vector() 11 0.225 0.2267 0.228 6.75%
Castro::construct_old_gravity() 10 0.1972 0.2058 0.2144 6.35%
Gravity::get_old_grav_vector() 10 0.1963 0.205 0.2136 6.32%
Castro::construct_new_gravity() 10 0.2022 0.2031 0.2036 6.03%
Amr::init() 1 0.1937 0.1938 0.1938 5.74%
Amr::initialInit() 1 0.1807 0.1809 0.1812 5.36%
FillPatchIterator::Initialize 41 0.1607 0.1672 0.1707 5.06%
Castro::initialize_do_advance() 10 0.1471 0.1571 0.1623 4.81%
Amr::InitializeInit() 1 0.05889 0.1012 0.1538 4.55%
Amr::defBaseLevel() 1 0.05889 0.1012 0.1538 4.55%
FillPatchSingleLevel 41 0.1198 0.1251 0.1386 4.10%
Castro::initData() 1 0.04363 0.0868 0.1385 4.10%
Castro::clean_state() 62 0.115 0.1182 0.1226 3.63%
Amr::FinalizeInit() 1 0.02714 0.07971 0.1219 3.61%
Castro::estTimeStep() 21 0.01748 0.07581 0.1214 3.59%
Castro::expand_state() 10 0.1024 0.1091 0.113 3.35%
MultiFab::min() 10 0.01182 0.05789 0.09927 2.94%
FabArray::ParallelCopy() 41 0.07699 0.08323 0.09821 2.91%
Castro::computeInitialDt() 2 0.001748 0.05432 0.09655 2.86%
Castro::initialize_advance() 10 0.0738 0.07672 0.07904 2.34%
FabArray::setVal() 143 0.07074 0.074 0.0775 2.29%
Castro::computeTemp() 63 0.06724 0.06913 0.07197 2.13%
Castro::do_new_sources() 10 0.06133 0.06568 0.06985 2.07%
Amr::writePlotFile() 2 0.05846 0.05863 0.05883 1.74%
FabArray::ParallelCopy_finish() 41 0.03395 0.04092 0.05775 1.71%
Castro::reset_internal_energy() 63 0.04851 0.05017 0.05211 1.54%
Castro::do_old_sources() 10 0.04726 0.0491 0.05 1.48%
StateDataPhysBCFunct::() 41 0.03936 0.0418 0.04546 1.35%
StateData::FillBoundary(geom) 41 0.03923 0.04166 0.04533 1.34%
Castro::normalize_species() 62 0.04246 0.04365 0.04529 1.34%
FabArray::ParallelCopy_nowait() 41 0.04039 0.04224 0.0445 1.32%
Castro::construct_new_source() 50 0.02949 0.03146 0.03376 1.00%
Gravity::interpolate_monopole_grav() 21 0.02764 0.02804 0.0286 0.85%
Castro::construct_new_gravity_source() 10 0.02308 0.02473 0.02682 0.79%
Castro::post_init() 1 0.02424 0.02466 0.02488 0.74%
Castro::apply_source_to_state() 20 0.015 0.01605 0.01668 0.49%
MultiFab::Saxpy() 20 0.01495 0.016 0.01663 0.49%
Castro::post_timestep() 10 0.01584 0.01603 0.0164 0.49%
VisMF::Write(FabArray) 2 0.01146 0.01199 0.01402 0.42%
Castro::check_for_nan() 20 0.01125 0.01215 0.01326 0.39%
MultiFab::contains_nan() 20 0.01122 0.01212 0.01323 0.39%
Castro::construct_old_source() 50 0.009317 0.01168 0.01242 0.37%
Castro::construct_old_gravity_source() 10 0.009245 0.0116 0.01233 0.36%
FabArray::setDomainBndry() 41 0.006909 0.01045 0.0119 0.35%
Castro::computeNewDt() 9 0.006961 0.007646 0.008204 0.24%
Castro::enforce_min_density() 62 0.005874 0.006174 0.006472 0.19%
AmrLevel::AmrLevel(dm) 1 0.004373 0.004759 0.005129 0.15%
StateData::define() 4 0.004345 0.004733 0.005092 0.15%
Castro::swap_state_time_levels() 10 0.002935 0.003749 0.00389 0.12%
Castro::post_regrid() 1 0.001506 0.001633 0.001988 0.06%
Castro::finalize_do_advance() 10 0.0004972 0.0008232 0.000928 0.03%
Amr::InitAmr() 1 0.0002673 0.0003164 0.0004367 0.01%
DistributionMapping::SFCProcessorMapDoIt() 1 1.434e-05 0.0001336 0.0001923 0.01%
DistributionMapping::LeastUsedCPUs() 1 8.678e-06 0.0001279 0.0001855 0.01%
FabArrayBase::getCPC() 41 7.1e-05 8.411e-05 0.0001015 0.00%
Castro::enforce_consistent_e() 1 8.292e-05 8.843e-05 9.641e-05 0.00%
Amr::writeSmallPlotFile() 1 2.491e-05 4.525e-05 7.287e-05 0.00%
Castro::finalize_advance() 10 5.337e-05 5.948e-05 6.393e-05 0.00%
Castro::enforce_speed_limit() 62 2.926e-05 3.218e-05 3.746e-05 0.00%
FabArrayBase::CPC::define() 2 2.29e-05 2.604e-05 3.304e-05 0.00%
Castro::create_source_corrector() 10 1.324e-05 1.821e-05 2.438e-05 0.00%
Gravity::swapTimeLevels() 10 1.181e-05 1.434e-05 1.599e-05 0.00%
Amr::initSubcycle() 1 8.659e-06 9.72e-06 1.129e-05 0.00%
Gravity::set_mass_offset() 10 7.357e-06 8.072e-06 9.591e-06 0.00%
Castro::FluxRegFineAdd() 10 5.051e-06 6.487e-06 7.659e-06 0.00%
Castro::retry_advance_ctu() 10 4.989e-06 6.267e-06 7.445e-06 0.00%
DistributionMapping::Distribute() 1 9.17e-07 1.055e-06 1.388e-06 0.00%
-------------------------------------------------------------------------------------------
Unused ParmParse Variables:
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2]
AMReX (22.03-36-g75e2e7d09e68) finalized