MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.04-24-gf2d7f67848de) initialized Starting run at 05:37:30 UTC on 2022-04-18. Successfully read inputs file ... Castro git describe: 22.04-9-g765ae0c56 AMReX git describe: 22.04-24-gf2d7f6784 Microphysics git describe: 22.04-3-g3c498521 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014857987 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.333329802 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339419001 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.314065248 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.312765336 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.314399236 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.335586102 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.299339844 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.294262339 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.295292609 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.294289015 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009249156 seconds Ending run at 05:37:34 UTC on 2022-04-18. Run time = 3.342252019 Run time without initialization = 3.145027803 Average number of zones advanced per microsecond: 0.834 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.342 ... 3.342 ... 3.342 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0890 2.1727 2.2138 66.24% Gravity::make_radial_gravity() 21 0.3351 0.3448 0.3606 10.79% MultiFab::min() 10 0.0365 0.07985 0.1694 5.07% Castro::initData() 1 0.03914 0.08067 0.1347 4.03% Castro::estTimeStep() 21 0.02399 0.07775 0.1212 3.63% FabArray::setVal() 143 0.06819 0.07306 0.07741 2.32% FabArray::ParallelCopy_finish() 41 0.03072 0.04047 0.06364 1.90% Castro::reset_internal_energy() 63 0.04768 0.04945 0.05108 1.53% StateData::FillBoundary(geom) 41 0.03662 0.04107 0.0455 1.36% Castro::normalize_species() 62 0.0431 0.04379 0.04457 1.33% FabArray::ParallelCopy_nowait() 41 0.03583 0.04119 0.04396 1.32% FillPatchIterator::Initialize 41 0.02359 0.03141 0.03439 1.03% Gravity::interpolate_monopole_grav() 21 0.02758 0.02811 0.02858 0.86% Castro::construct_new_gravity_source() 10 0.02152 0.02377 0.02616 0.78% Castro::do_advance_ctu() 10 0.01755 0.02019 0.02432 0.73% Castro::expand_state() 10 0.01171 0.01873 0.02134 0.64% Castro::computeTemp() 63 0.01729 0.0182 0.01917 0.57% Castro::initialize_do_advance() 10 0.01087 0.01629 0.01838 0.55% MultiFab::Saxpy() 20 0.01378 0.01525 0.01619 0.48% VisMF::Write(FabArray) 2 0.01178 0.01275 0.01553 0.46% Castro::initialize_advance() 10 0.01056 0.01261 0.0146 0.44% Gravity::get_new_grav_vector() 11 0.009776 0.01122 0.01328 0.40% MultiFab::contains_nan() 20 0.01009 0.01092 0.0125 0.37% Amr::writePlotFile() 2 0.008785 0.01138 0.01233 0.37% FabArray::setDomainBndry() 41 0.006913 0.01029 0.01179 0.35% Castro::construct_old_gravity_source() 10 0.007253 0.01098 0.01177 0.35% Gravity::get_old_grav_vector() 10 0.006768 0.009106 0.01038 0.31% Amr::defBaseLevel() 1 0.006842 0.007209 0.008366 0.25% Castro::enforce_min_density() 62 0.006468 0.00673 0.007039 0.21% Castro::construct_new_source() 50 0.006066 0.006479 0.00671 0.20% StateData::define() 4 0.004439 0.004586 0.004938 0.15% Castro::swap_state_time_levels() 10 0.002981 0.003838 0.00402 0.12% main() 1 0.00339 0.003771 0.00395 0.12% Amr::coarseTimeStep() 10 0.0003959 0.0006728 0.001358 0.04% Castro::finalize_do_advance() 10 0.0004111 0.00097 0.001208 0.04% Amr::timeStep() 10 0.0001658 0.0002238 0.0004807 0.01% Amr::InitAmr() 1 0.0002594 0.0002811 0.000363 0.01% Castro::clean_state() 62 0.0001199 0.0001373 0.0001505 0.00% StateDataPhysBCFunct::() 41 0.0001124 0.0001225 0.0001425 0.00% DistributionMapping::LeastUsedCPUs() 1 8.069e-06 8.939e-05 0.0001114 0.00% Castro::enforce_consistent_e() 1 7.844e-05 8.771e-05 9.422e-05 0.00% Castro::construct_old_source() 50 4.787e-05 7.319e-05 8.629e-05 0.00% FillPatchSingleLevel 41 6.123e-05 6.793e-05 8.039e-05 0.00% Amr::FinalizeInit() 1 4.184e-06 1.407e-05 7.714e-05 0.00% FabArray::ParallelCopy() 41 6.301e-05 6.778e-05 7.078e-05 0.00% Castro::do_new_sources() 10 4.827e-05 5.792e-05 6.928e-05 0.00% Amr::writeSmallPlotFile() 1 5.249e-05 5.708e-05 6.856e-05 0.00% FabArrayBase::getCPC() 41 4.714e-05 5.471e-05 6.818e-05 0.00% Castro::subcycle_advance_ctu() 10 5.165e-05 5.815e-05 6.807e-05 0.00% Castro::do_old_sources() 10 4.181e-05 5.771e-05 6.763e-05 0.00% Castro::finalize_advance() 10 5.065e-05 5.413e-05 5.775e-05 0.00% Castro::construct_old_gravity() 10 4.636e-05 5.152e-05 5.668e-05 0.00% Castro::construct_new_gravity() 10 3.96e-05 4.576e-05 5.588e-05 0.00% Castro::apply_source_to_state() 20 4.011e-05 4.647e-05 5.351e-05 0.00% Castro::advance() 10 3.549e-05 4.064e-05 4.9e-05 0.00% Castro::enforce_speed_limit() 62 3.059e-05 3.403e-05 3.778e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.626e-05 2.529e-05 3.539e-05 0.00% FabArrayBase::CPC::define() 2 2.328e-05 2.595e-05 3.117e-05 0.00% Castro::check_for_nan() 20 2.159e-05 2.437e-05 2.701e-05 0.00% Castro::create_source_corrector() 10 1.472e-05 1.623e-05 1.911e-05 0.00% Gravity::swapTimeLevels() 10 1.015e-05 1.313e-05 1.906e-05 0.00% Castro::post_timestep() 10 8.965e-06 9.67e-06 1.174e-05 0.00% Amr::initSubcycle() 1 8.205e-06 8.828e-06 9.644e-06 0.00% Gravity::set_mass_offset() 10 7.511e-06 8.389e-06 9.009e-06 0.00% Castro::computeNewDt() 9 7.181e-06 8.098e-06 8.72e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.653e-06 4.892e-06 7.626e-06 0.00% Castro::FluxRegFineAdd() 10 6.254e-06 6.952e-06 7.346e-06 0.00% Castro::retry_advance_ctu() 10 5.373e-06 5.915e-06 6.396e-06 0.00% Amr::InitializeInit() 1 2.143e-06 3.313e-06 6.324e-06 0.00% Castro::computeInitialDt() 2 3.613e-06 4.604e-06 6.228e-06 0.00% Castro::post_init() 1 3.575e-06 4.522e-06 5.74e-06 0.00% Castro::post_regrid() 1 2.148e-06 3.246e-06 4.704e-06 0.00% Amr::init() 1 1.88e-06 2.295e-06 2.735e-06 0.00% Amr::initialInit() 1 1.105e-06 1.376e-06 1.628e-06 0.00% DistributionMapping::Distribute() 1 9.04e-07 1.058e-06 1.284e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.342 3.342 3.342 100.00% Amr::coarseTimeStep() 10 3.132 3.132 3.132 93.70% Amr::timeStep() 10 3.122 3.123 3.123 93.45% Castro::advance() 10 3.106 3.107 3.107 92.96% Castro::subcycle_advance_ctu() 10 3.028 3.03 3.032 90.72% Castro::do_advance_ctu() 10 3.028 3.03 3.032 90.72% Castro::construct_ctu_hydro_source() 10 2.089 2.173 2.214 66.24% Gravity::make_radial_gravity() 21 0.3351 0.3448 0.3606 10.79% Gravity::get_new_grav_vector() 11 0.225 0.2264 0.228 6.82% Castro::construct_old_gravity() 10 0.1974 0.2038 0.2159 6.46% Gravity::get_old_grav_vector() 10 0.1965 0.203 0.2153 6.44% Castro::construct_new_gravity() 10 0.2015 0.2023 0.2033 6.08% Amr::init() 1 0.1967 0.1968 0.1968 5.89% Amr::initialInit() 1 0.1817 0.182 0.1821 5.45% FillPatchIterator::Initialize 41 0.1553 0.1648 0.1703 5.10% MultiFab::min() 10 0.0365 0.07985 0.1694 5.07% Castro::initialize_do_advance() 10 0.1418 0.1553 0.1626 4.87% Amr::InitializeInit() 1 0.05828 0.09934 0.1544 4.62% Amr::defBaseLevel() 1 0.05828 0.09934 0.1544 4.62% Castro::initData() 1 0.04266 0.08482 0.1387 4.15% FillPatchSingleLevel 41 0.116 0.1231 0.1382 4.13% Amr::FinalizeInit() 1 0.02747 0.08267 0.1239 3.71% Castro::estTimeStep() 21 0.02399 0.07775 0.1212 3.63% Castro::clean_state() 62 0.1149 0.1174 0.1195 3.58% Castro::expand_state() 10 0.09947 0.1079 0.1149 3.44% FabArray::ParallelCopy() 41 0.0737 0.08181 0.09963 2.98% Castro::computeInitialDt() 2 0.00182 0.05692 0.09797 2.93% Castro::initialize_advance() 10 0.07439 0.07667 0.07877 2.36% FabArray::setVal() 143 0.06819 0.07306 0.07741 2.32% Castro::computeTemp() 63 0.065 0.06765 0.06967 2.08% Castro::do_new_sources() 10 0.06059 0.06346 0.06764 2.02% FabArray::ParallelCopy_finish() 41 0.03072 0.04047 0.06364 1.90% Castro::reset_internal_energy() 63 0.04768 0.04945 0.05108 1.53% Castro::do_old_sources() 10 0.04254 0.04755 0.04846 1.45% StateDataPhysBCFunct::() 41 0.03674 0.0412 0.04562 1.36% StateData::FillBoundary(geom) 41 0.03662 0.04107 0.0455 1.36% Castro::normalize_species() 62 0.0431 0.04379 0.04457 1.33% FabArray::ParallelCopy_nowait() 41 0.03592 0.04127 0.04403 1.32% Castro::construct_new_source() 50 0.02758 0.03025 0.03283 0.98% Gravity::interpolate_monopole_grav() 21 0.02758 0.02811 0.02858 0.86% Castro::construct_new_gravity_source() 10 0.02152 0.02377 0.02616 0.78% Castro::post_init() 1 0.02473 0.02502 0.02523 0.75% Amr::writePlotFile() 2 0.02399 0.02412 0.02432 0.73% Castro::apply_source_to_state() 20 0.01383 0.0153 0.01624 0.49% MultiFab::Saxpy() 20 0.01378 0.01525 0.01619 0.48% Castro::post_timestep() 10 0.01534 0.01576 0.01615 0.48% VisMF::Write(FabArray) 2 0.01178 0.01275 0.01553 0.46% Castro::check_for_nan() 20 0.01012 0.01094 0.01252 0.37% MultiFab::contains_nan() 20 0.01009 0.01092 0.0125 0.37% Castro::construct_old_source() 50 0.007301 0.01106 0.01184 0.35% FabArray::setDomainBndry() 41 0.006913 0.01029 0.01179 0.35% Castro::construct_old_gravity_source() 10 0.007253 0.01098 0.01177 0.35% Castro::computeNewDt() 9 0.00685 0.007554 0.00833 0.25% Castro::enforce_min_density() 62 0.006468 0.00673 0.007039 0.21% AmrLevel::AmrLevel(dm) 1 0.004463 0.004611 0.004973 0.15% StateData::define() 4 0.004439 0.004586 0.004938 0.15% Castro::swap_state_time_levels() 10 0.002981 0.003838 0.00402 0.12% Castro::post_regrid() 1 0.001601 0.001689 0.001863 0.06% Castro::finalize_do_advance() 10 0.0004111 0.00097 0.001208 0.04% Amr::InitAmr() 1 0.0002678 0.0002899 0.0003714 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.323e-05 9.534e-05 0.0001186 0.00% DistributionMapping::LeastUsedCPUs() 1 8.069e-06 8.939e-05 0.0001114 0.00% Castro::enforce_consistent_e() 1 7.844e-05 8.771e-05 9.422e-05 0.00% FabArrayBase::getCPC() 41 7.138e-05 8.066e-05 9.343e-05 0.00% Amr::writeSmallPlotFile() 1 5.249e-05 5.708e-05 6.856e-05 0.00% Castro::finalize_advance() 10 5.71e-05 6.109e-05 6.484e-05 0.00% Castro::enforce_speed_limit() 62 3.059e-05 3.403e-05 3.778e-05 0.00% FabArrayBase::CPC::define() 2 2.328e-05 2.595e-05 3.117e-05 0.00% Castro::create_source_corrector() 10 1.472e-05 1.623e-05 1.911e-05 0.00% Gravity::swapTimeLevels() 10 1.015e-05 1.313e-05 1.906e-05 0.00% Amr::initSubcycle() 1 8.205e-06 8.828e-06 9.644e-06 0.00% Gravity::set_mass_offset() 10 7.511e-06 8.389e-06 9.009e-06 0.00% Castro::FluxRegFineAdd() 10 6.254e-06 6.952e-06 7.346e-06 0.00% Castro::retry_advance_ctu() 10 5.373e-06 5.915e-06 6.396e-06 0.00% DistributionMapping::Distribute() 1 9.04e-07 1.058e-06 1.284e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.04-24-gf2d7f67848de) finalized