MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.04-26-g0d136ea53aed) initialized Starting run at 05:37:08 UTC on 2022-04-19. Successfully read inputs file ... Castro git describe: 22.04-12-g78961ce2c AMReX git describe: 22.04-26-g0d136ea53 Microphysics git describe: 22.04-3-g3c498521 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012995705 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.339459962 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.340240348 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338259943 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.315866479 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.31252442 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337096068 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.296688686 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.290095838 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.29113066 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.290130198 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.043612263 seconds Ending run at 05:37:12 UTC on 2022-04-19. Run time = 3.386099451 Run time without initialization = 3.198794032 Average number of zones advanced per microsecond: 0.820 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.386 ... 3.386 ... 3.386 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1080 2.1817 2.2205 65.58% Gravity::make_radial_gravity() 21 0.3247 0.3372 0.3463 10.23% MultiFab::min() 10 0.04731 0.0901 0.1669 4.93% Castro::initData() 1 0.03803 0.08008 0.1247 3.68% Castro::estTimeStep() 21 0.01874 0.07042 0.1177 3.48% FabArray::setVal() 143 0.07034 0.07288 0.07722 2.28% FabArray::ParallelCopy_finish() 41 0.033 0.0397 0.05656 1.67% Castro::reset_internal_energy() 63 0.04812 0.04986 0.05133 1.52% StateData::FillBoundary(geom) 41 0.03759 0.04167 0.04623 1.37% Amr::writePlotFile() 2 0.04262 0.04459 0.04521 1.34% FabArray::ParallelCopy_nowait() 41 0.04008 0.04232 0.04416 1.30% Castro::normalize_species() 62 0.04298 0.04333 0.04358 1.29% FillPatchIterator::Initialize 41 0.02378 0.03103 0.03425 1.01% Gravity::interpolate_monopole_grav() 21 0.02774 0.02794 0.02839 0.84% Castro::construct_new_gravity_source() 10 0.02306 0.02467 0.02624 0.77% Castro::do_advance_ctu() 10 0.01833 0.0211 0.02526 0.75% Castro::expand_state() 10 0.01419 0.01937 0.02159 0.64% Castro::computeTemp() 63 0.01853 0.01899 0.01948 0.58% Castro::initialize_do_advance() 10 0.01217 0.01653 0.01839 0.54% MultiFab::Saxpy() 20 0.01478 0.01577 0.0164 0.48% Castro::initialize_advance() 10 0.0107 0.01235 0.01434 0.42% VisMF::Write(FabArray) 2 0.01154 0.01214 0.01424 0.42% Gravity::get_new_grav_vector() 11 0.01065 0.01169 0.01331 0.39% Castro::construct_old_gravity_source() 10 0.00996 0.01165 0.01251 0.37% MultiFab::contains_nan() 20 0.01074 0.01135 0.01247 0.37% FabArray::setDomainBndry() 41 0.007521 0.01061 0.01186 0.35% Gravity::get_old_grav_vector() 10 0.007873 0.00945 0.01052 0.31% Amr::defBaseLevel() 1 0.006486 0.007633 0.01013 0.30% Castro::enforce_min_density() 62 0.006345 0.006698 0.006973 0.21% Castro::construct_new_source() 50 0.0065 0.00667 0.006867 0.20% StateData::define() 4 0.004239 0.004931 0.006272 0.19% main() 1 0.003547 0.003878 0.00412 0.12% Castro::swap_state_time_levels() 10 0.002925 0.00377 0.003924 0.12% Castro::finalize_do_advance() 10 0.0009098 0.001175 0.001334 0.04% Amr::coarseTimeStep() 10 0.0004047 0.000527 0.0008044 0.02% Amr::InitAmr() 1 0.0002895 0.000347 0.0005844 0.02% Amr::timeStep() 10 0.00017 0.0002394 0.0005484 0.02% DistributionMapping::LeastUsedCPUs() 1 1.061e-05 0.0003032 0.0003771 0.01% StateDataPhysBCFunct::() 41 0.0001258 0.0001393 0.0001478 0.00% Castro::clean_state() 62 0.0001201 0.0001305 0.0001437 0.00% Castro::enforce_consistent_e() 1 7.818e-05 8.504e-05 9.586e-05 0.00% Amr::FinalizeInit() 1 4.326e-06 1.598e-05 9.167e-05 0.00% Castro::construct_old_source() 50 5.439e-05 7.464e-05 9.123e-05 0.00% Castro::do_new_sources() 10 5.373e-05 6.058e-05 7.481e-05 0.00% FabArray::ParallelCopy() 41 5.679e-05 6.517e-05 7.366e-05 0.00% Castro::do_old_sources() 10 5.147e-05 6.114e-05 7.233e-05 0.00% FillPatchSingleLevel 41 5.903e-05 6.621e-05 7.208e-05 0.00% Castro::subcycle_advance_ctu() 10 3.734e-05 5.288e-05 6.541e-05 0.00% Amr::writeSmallPlotFile() 1 3.213e-05 4.92e-05 6.476e-05 0.00% FabArrayBase::getCPC() 41 3.994e-05 5.053e-05 5.923e-05 0.00% Castro::construct_old_gravity() 10 4.552e-05 5.192e-05 5.676e-05 0.00% Castro::finalize_advance() 10 5.039e-05 5.327e-05 5.62e-05 0.00% Castro::construct_new_gravity() 10 4.087e-05 4.61e-05 5.092e-05 0.00% Castro::apply_source_to_state() 20 3.419e-05 4.48e-05 5.037e-05 0.00% Castro::advance() 10 3.242e-05 3.981e-05 4.71e-05 0.00% Castro::enforce_speed_limit() 62 2.716e-05 3.099e-05 3.883e-05 0.00% FabArrayBase::CPC::define() 2 2.338e-05 2.637e-05 3.166e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.206e-05 1.974e-05 3.104e-05 0.00% Castro::check_for_nan() 20 2.232e-05 2.489e-05 2.939e-05 0.00% Gravity::swapTimeLevels() 10 1.125e-05 1.403e-05 2.236e-05 0.00% Castro::create_source_corrector() 10 1.153e-05 1.6e-05 1.85e-05 0.00% Amr::initSubcycle() 1 8.371e-06 1.057e-05 1.48e-05 0.00% Amr::init() 1 2.1e-06 3.438e-06 1.101e-05 0.00% Castro::post_timestep() 10 8.127e-06 1.004e-05 1.09e-05 0.00% Gravity::set_mass_offset() 10 7.21e-06 7.812e-06 9.059e-06 0.00% Castro::computeNewDt() 9 6.392e-06 7.677e-06 8.515e-06 0.00% Castro::FluxRegFineAdd() 10 5.344e-06 6.367e-06 8.059e-06 0.00% Amr::InitializeInit() 1 2.39e-06 4.155e-06 7.794e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.058e-06 5.061e-06 6.909e-06 0.00% Castro::retry_advance_ctu() 10 4.897e-06 5.692e-06 6.691e-06 0.00% Castro::post_init() 1 3.191e-06 4.327e-06 5.821e-06 0.00% Castro::computeInitialDt() 2 2.965e-06 4.186e-06 4.872e-06 0.00% Castro::post_regrid() 1 1.885e-06 3.053e-06 4.135e-06 0.00% Amr::initialInit() 1 1.065e-06 1.395e-06 1.989e-06 0.00% DistributionMapping::Distribute() 1 9.24e-07 1.237e-06 1.69e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.386 3.386 3.386 100.00% Amr::coarseTimeStep() 10 3.151 3.151 3.151 93.06% Amr::timeStep() 10 3.141 3.142 3.143 92.80% Castro::advance() 10 3.125 3.125 3.126 92.31% Castro::subcycle_advance_ctu() 10 3.047 3.049 3.051 90.11% Castro::do_advance_ctu() 10 3.047 3.049 3.051 90.11% Castro::construct_ctu_hydro_source() 10 2.108 2.182 2.221 65.58% Gravity::make_radial_gravity() 21 0.3247 0.3372 0.3463 10.23% Gravity::get_new_grav_vector() 11 0.2193 0.2205 0.2212 6.53% Castro::construct_old_gravity() 10 0.193 0.2033 0.2104 6.21% Gravity::get_old_grav_vector() 10 0.1921 0.2025 0.2096 6.19% Castro::construct_new_gravity() 10 0.1962 0.1971 0.1982 5.85% Amr::init() 1 0.1865 0.1868 0.1869 5.52% Amr::initialInit() 1 0.1733 0.1738 0.174 5.14% FillPatchIterator::Initialize 41 0.1619 0.1657 0.1708 5.05% MultiFab::min() 10 0.04731 0.0901 0.1669 4.93% Castro::initialize_do_advance() 10 0.1483 0.1575 0.1624 4.80% Amr::InitializeInit() 1 0.05579 0.09881 0.1469 4.34% Amr::defBaseLevel() 1 0.05579 0.09881 0.1469 4.34% FillPatchSingleLevel 41 0.1181 0.124 0.1346 3.98% Castro::initData() 1 0.04164 0.08384 0.1285 3.79% Castro::clean_state() 62 0.1159 0.1181 0.1197 3.54% Amr::FinalizeInit() 1 0.02692 0.07497 0.118 3.48% Castro::estTimeStep() 21 0.01874 0.07042 0.1177 3.48% Castro::expand_state() 10 0.1031 0.1096 0.1145 3.38% FabArray::ParallelCopy() 41 0.07656 0.08216 0.09679 2.86% Castro::computeInitialDt() 2 0.001725 0.04988 0.09296 2.75% Castro::initialize_advance() 10 0.07424 0.07598 0.07801 2.30% FabArray::setVal() 143 0.07034 0.07288 0.07722 2.28% Castro::computeTemp() 63 0.06693 0.06885 0.07035 2.08% Castro::do_new_sources() 10 0.06188 0.06542 0.06883 2.03% Amr::writePlotFile() 2 0.05658 0.05673 0.0569 1.68% FabArray::ParallelCopy_finish() 41 0.033 0.0397 0.05656 1.67% Castro::reset_internal_energy() 63 0.04812 0.04986 0.05133 1.52% Castro::do_old_sources() 10 0.04782 0.04888 0.04933 1.46% StateDataPhysBCFunct::() 41 0.03774 0.04181 0.04637 1.37% StateData::FillBoundary(geom) 41 0.03759 0.04167 0.04623 1.37% FabArray::ParallelCopy_nowait() 41 0.04016 0.0424 0.04424 1.31% Castro::normalize_species() 62 0.04298 0.04333 0.04358 1.29% Castro::construct_new_source() 50 0.02962 0.03134 0.03305 0.98% Gravity::interpolate_monopole_grav() 21 0.02774 0.02794 0.02839 0.84% Castro::construct_new_gravity_source() 10 0.02306 0.02467 0.02624 0.77% Castro::post_init() 1 0.02411 0.02439 0.02461 0.73% Castro::post_timestep() 10 0.01567 0.01616 0.01658 0.49% Castro::apply_source_to_state() 20 0.01482 0.01582 0.01644 0.49% MultiFab::Saxpy() 20 0.01478 0.01577 0.0164 0.48% VisMF::Write(FabArray) 2 0.01154 0.01214 0.01424 0.42% Castro::construct_old_source() 50 0.01002 0.01172 0.0126 0.37% Castro::construct_old_gravity_source() 10 0.00996 0.01165 0.01251 0.37% Castro::check_for_nan() 20 0.01077 0.01137 0.01249 0.37% MultiFab::contains_nan() 20 0.01074 0.01135 0.01247 0.37% FabArray::setDomainBndry() 41 0.007521 0.01061 0.01186 0.35% Castro::computeNewDt() 9 0.006908 0.007794 0.008485 0.25% Castro::enforce_min_density() 62 0.006345 0.006698 0.006973 0.21% AmrLevel::AmrLevel(dm) 1 0.004253 0.004951 0.006296 0.19% StateData::define() 4 0.004239 0.004931 0.006272 0.19% Castro::swap_state_time_levels() 10 0.002925 0.00377 0.003924 0.12% Castro::post_regrid() 1 0.001563 0.001617 0.001682 0.05% Castro::finalize_do_advance() 10 0.0009098 0.001175 0.001334 0.04% Amr::InitAmr() 1 0.0002989 0.0003576 0.0005992 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.632e-05 0.0003095 0.0003851 0.01% DistributionMapping::LeastUsedCPUs() 1 1.061e-05 0.0003032 0.0003771 0.01% Castro::enforce_consistent_e() 1 7.818e-05 8.504e-05 9.586e-05 0.00% FabArrayBase::getCPC() 41 6.332e-05 7.69e-05 8.706e-05 0.00% Amr::writeSmallPlotFile() 1 3.213e-05 4.92e-05 6.476e-05 0.00% Castro::finalize_advance() 10 5.574e-05 5.964e-05 6.382e-05 0.00% Castro::enforce_speed_limit() 62 2.716e-05 3.099e-05 3.883e-05 0.00% FabArrayBase::CPC::define() 2 2.338e-05 2.637e-05 3.166e-05 0.00% Gravity::swapTimeLevels() 10 1.125e-05 1.403e-05 2.236e-05 0.00% Castro::create_source_corrector() 10 1.153e-05 1.6e-05 1.85e-05 0.00% Amr::initSubcycle() 1 8.371e-06 1.057e-05 1.48e-05 0.00% Gravity::set_mass_offset() 10 7.21e-06 7.812e-06 9.059e-06 0.00% Castro::FluxRegFineAdd() 10 5.344e-06 6.367e-06 8.059e-06 0.00% Castro::retry_advance_ctu() 10 4.897e-06 5.692e-06 6.691e-06 0.00% DistributionMapping::Distribute() 1 9.24e-07 1.237e-06 1.69e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.04-26-g0d136ea53aed) finalized