MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.04-26-g0d136ea53aed) initialized Starting run at 05:37:16 UTC on 2022-04-20. Successfully read inputs file ... Castro git describe: 22.04-12-g78961ce2c AMReX git describe: 22.04-26-g0d136ea53 Microphysics git describe: 22.04-3-g3c498521 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012714338 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.33689469 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.328178356 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.315863551 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.31603031 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.315132769 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342601728 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.299993716 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.29379372 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.292350541 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.293629394 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009730715 seconds Ending run at 05:37:19 UTC on 2022-04-20. Run time = 3.339160614 Run time without initialization = 3.148179891 Average number of zones advanced per microsecond: 0.833 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.339 ... 3.339 ... 3.339 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0965 2.1902 2.2231 66.58% Gravity::make_radial_gravity() 21 0.3322 0.3452 0.3669 10.99% MultiFab::min() 10 0.02199 0.05946 0.1568 4.70% Castro::initData() 1 0.04687 0.08321 0.125 3.74% Castro::estTimeStep() 21 0.01767 0.06754 0.1056 3.16% FabArray::setVal() 143 0.06788 0.07228 0.07697 2.31% FabArray::ParallelCopy_finish() 41 0.03259 0.04087 0.06267 1.88% Castro::reset_internal_energy() 63 0.04845 0.04991 0.05184 1.55% StateData::FillBoundary(geom) 41 0.0374 0.04212 0.04604 1.38% Castro::normalize_species() 62 0.04276 0.0435 0.04454 1.33% FabArray::ParallelCopy_nowait() 41 0.03659 0.04202 0.04419 1.32% FillPatchIterator::Initialize 41 0.02358 0.03114 0.03413 1.02% Gravity::interpolate_monopole_grav() 21 0.0277 0.02797 0.02831 0.85% Castro::construct_new_gravity_source() 10 0.02251 0.02418 0.02645 0.79% Castro::do_advance_ctu() 10 0.01768 0.02037 0.02408 0.72% Castro::expand_state() 10 0.0106 0.01863 0.02111 0.63% Castro::computeTemp() 63 0.01818 0.01906 0.01964 0.59% Castro::initialize_do_advance() 10 0.01054 0.01609 0.01774 0.53% MultiFab::Saxpy() 20 0.01412 0.01545 0.01661 0.50% Castro::initialize_advance() 10 0.01071 0.01243 0.01449 0.43% VisMF::Write(FabArray) 2 0.01162 0.01203 0.0141 0.42% Gravity::get_new_grav_vector() 11 0.01051 0.01156 0.01371 0.41% MultiFab::contains_nan() 20 0.01078 0.01145 0.01257 0.38% Castro::construct_old_gravity_source() 10 0.007408 0.01107 0.01209 0.36% FabArray::setDomainBndry() 41 0.007129 0.01058 0.01207 0.36% Amr::writePlotFile() 2 0.008584 0.01068 0.01117 0.33% Gravity::get_old_grav_vector() 10 0.007851 0.009355 0.01052 0.32% Amr::defBaseLevel() 1 0.006497 0.007629 0.01002 0.30% Castro::enforce_min_density() 62 0.00645 0.006749 0.007056 0.21% Castro::construct_new_source() 50 0.006022 0.006507 0.006762 0.20% StateData::define() 4 0.00421 0.004826 0.006116 0.18% main() 1 0.003449 0.003725 0.004097 0.12% Amr::InitAmr() 1 0.0002702 0.0007858 0.004029 0.12% Castro::swap_state_time_levels() 10 0.003443 0.003871 0.003965 0.12% DistributionMapping::LeastUsedCPUs() 1 7.259e-06 0.003255 0.003788 0.11% Amr::coarseTimeStep() 10 0.0003902 0.0006886 0.00136 0.04% Castro::finalize_do_advance() 10 0.0004622 0.000856 0.001022 0.03% Amr::timeStep() 10 0.0001596 0.0002309 0.0005073 0.02% Castro::clean_state() 62 0.0001236 0.0001404 0.0001733 0.01% StateDataPhysBCFunct::() 41 0.0001277 0.0001436 0.0001625 0.00% Castro::construct_old_source() 50 6.9e-05 8.148e-05 9.579e-05 0.00% Castro::enforce_consistent_e() 1 8.291e-05 8.864e-05 9.409e-05 0.00% FabArrayBase::getCPC() 41 4.951e-05 5.882e-05 8.335e-05 0.00% FillPatchSingleLevel 41 6.037e-05 7.057e-05 8.278e-05 0.00% FabArray::ParallelCopy() 41 6.538e-05 7.177e-05 8.013e-05 0.00% Amr::FinalizeInit() 1 3.476e-06 1.382e-05 7.898e-05 0.00% Castro::do_new_sources() 10 5.809e-05 6.701e-05 7.882e-05 0.00% Castro::subcycle_advance_ctu() 10 4.35e-05 5.995e-05 7.371e-05 0.00% Castro::do_old_sources() 10 5.322e-05 6.251e-05 7.231e-05 0.00% Amr::writeSmallPlotFile() 1 3.119e-05 5.875e-05 7.11e-05 0.00% Castro::construct_old_gravity() 10 5.54e-05 6.309e-05 6.873e-05 0.00% Castro::apply_source_to_state() 20 4.364e-05 5.285e-05 6.456e-05 0.00% Castro::finalize_advance() 10 4.994e-05 5.684e-05 6.221e-05 0.00% Castro::construct_new_gravity() 10 4.256e-05 5.128e-05 6.049e-05 0.00% Castro::advance() 10 3.972e-05 4.234e-05 4.651e-05 0.00% FabArrayBase::CPC::define() 2 2.235e-05 2.767e-05 4.082e-05 0.00% Castro::enforce_speed_limit() 62 2.765e-05 3.209e-05 3.979e-05 0.00% Castro::check_for_nan() 20 2.389e-05 2.67e-05 2.97e-05 0.00% Castro::computeNewDt() 9 6.907e-06 9.4e-06 2.368e-05 0.00% Castro::create_source_corrector() 10 1.586e-05 1.754e-05 2.002e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.152e-05 1.592e-05 1.981e-05 0.00% Gravity::swapTimeLevels() 10 1.365e-05 1.573e-05 1.92e-05 0.00% Castro::post_init() 1 2.983e-06 5.715e-06 1.809e-05 0.00% Amr::initSubcycle() 1 8.596e-06 1.087e-05 1.545e-05 0.00% Castro::post_timestep() 10 9.003e-06 1.031e-05 1.24e-05 0.00% Amr::InitializeInit() 1 2.047e-06 4.11e-06 8.638e-06 0.00% Gravity::set_mass_offset() 10 6.258e-06 7.656e-06 8.524e-06 0.00% Castro::FluxRegFineAdd() 10 5.669e-06 6.811e-06 7.822e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.148e-06 5.001e-06 7.1e-06 0.00% Castro::retry_advance_ctu() 10 4.382e-06 5.863e-06 7.033e-06 0.00% Amr::initialInit() 1 1.134e-06 2.134e-06 6.894e-06 0.00% Castro::computeInitialDt() 2 2.994e-06 3.869e-06 4.888e-06 0.00% Castro::post_regrid() 1 1.839e-06 2.653e-06 3.443e-06 0.00% Amr::init() 1 1.811e-06 2.139e-06 2.528e-06 0.00% DistributionMapping::Distribute() 1 1.049e-06 1.241e-06 1.637e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.339 3.339 3.339 100.00% Amr::coarseTimeStep() 10 3.134 3.134 3.134 93.86% Amr::timeStep() 10 3.125 3.125 3.126 93.61% Castro::advance() 10 3.109 3.109 3.109 93.12% Castro::subcycle_advance_ctu() 10 3.029 3.032 3.034 90.86% Castro::do_advance_ctu() 10 3.029 3.032 3.034 90.86% Castro::construct_ctu_hydro_source() 10 2.096 2.19 2.223 66.58% Gravity::make_radial_gravity() 21 0.3322 0.3452 0.3669 10.99% Gravity::get_new_grav_vector() 11 0.2246 0.2255 0.2269 6.79% Castro::construct_old_gravity() 10 0.1964 0.2063 0.2255 6.75% Gravity::get_old_grav_vector() 10 0.1955 0.2055 0.2247 6.73% Castro::construct_new_gravity() 10 0.2008 0.2016 0.2023 6.06% Amr::init() 1 0.1868 0.1901 0.1906 5.71% Amr::initialInit() 1 0.174 0.1772 0.1779 5.33% FillPatchIterator::Initialize 41 0.1615 0.1671 0.1718 5.15% Castro::initialize_do_advance() 10 0.1386 0.1567 0.1631 4.89% MultiFab::min() 10 0.02199 0.05946 0.1568 4.70% Amr::InitializeInit() 1 0.06501 0.1049 0.1501 4.50% Amr::defBaseLevel() 1 0.065 0.1049 0.1501 4.49% FillPatchSingleLevel 41 0.117 0.1254 0.1371 4.10% Castro::initData() 1 0.05074 0.08713 0.1287 3.85% Castro::clean_state() 62 0.1156 0.1184 0.1216 3.64% Castro::expand_state() 10 0.09837 0.1091 0.1145 3.43% Amr::FinalizeInit() 1 0.02742 0.07228 0.109 3.26% Castro::estTimeStep() 21 0.01767 0.06754 0.1056 3.16% FabArray::ParallelCopy() 41 0.07565 0.08305 0.09943 2.98% Castro::computeInitialDt() 2 0.001675 0.04656 0.08321 2.49% Castro::initialize_advance() 10 0.07529 0.07699 0.07968 2.39% FabArray::setVal() 143 0.06788 0.07228 0.07697 2.31% Castro::computeTemp() 63 0.06663 0.06897 0.07146 2.14% Castro::do_new_sources() 10 0.06083 0.06397 0.06839 2.05% FabArray::ParallelCopy_finish() 41 0.03259 0.04087 0.06267 1.88% Castro::reset_internal_energy() 63 0.04845 0.04991 0.05184 1.55% Castro::do_old_sources() 10 0.04213 0.04764 0.0489 1.46% StateDataPhysBCFunct::() 41 0.03756 0.04226 0.04618 1.38% StateData::FillBoundary(geom) 41 0.0374 0.04212 0.04604 1.38% Castro::normalize_species() 62 0.04276 0.0435 0.04454 1.33% FabArray::ParallelCopy_nowait() 41 0.03669 0.04211 0.04426 1.33% Castro::construct_new_source() 50 0.0291 0.03069 0.03322 0.99% Gravity::interpolate_monopole_grav() 21 0.0277 0.02797 0.02831 0.85% Castro::construct_new_gravity_source() 10 0.02251 0.02418 0.02645 0.79% Castro::post_init() 1 0.02477 0.025 0.02532 0.76% Amr::writePlotFile() 2 0.02234 0.02271 0.02296 0.69% Castro::apply_source_to_state() 20 0.01416 0.0155 0.01668 0.50% MultiFab::Saxpy() 20 0.01412 0.01545 0.01661 0.50% Castro::post_timestep() 10 0.01558 0.01592 0.0163 0.49% VisMF::Write(FabArray) 2 0.01162 0.01203 0.0141 0.42% Castro::check_for_nan() 20 0.01081 0.01148 0.0126 0.38% MultiFab::contains_nan() 20 0.01078 0.01145 0.01257 0.38% Castro::construct_old_source() 50 0.007477 0.01115 0.01218 0.36% Castro::construct_old_gravity_source() 10 0.007408 0.01107 0.01209 0.36% FabArray::setDomainBndry() 41 0.007129 0.01058 0.01207 0.36% Castro::computeNewDt() 9 0.006699 0.007326 0.007892 0.24% Castro::enforce_min_density() 62 0.00645 0.006749 0.007056 0.21% AmrLevel::AmrLevel(dm) 1 0.004224 0.004842 0.006134 0.18% StateData::define() 4 0.00421 0.004826 0.006116 0.18% Amr::InitAmr() 1 0.0002793 0.0007967 0.004039 0.12% Castro::swap_state_time_levels() 10 0.003443 0.003871 0.003965 0.12% DistributionMapping::SFCProcessorMapDoIt() 1 1.266e-05 0.003261 0.003796 0.11% DistributionMapping::LeastUsedCPUs() 1 7.259e-06 0.003255 0.003788 0.11% Castro::post_regrid() 1 0.001581 0.001618 0.001674 0.05% Castro::finalize_do_advance() 10 0.0004622 0.000856 0.001022 0.03% FabArrayBase::getCPC() 41 7.201e-05 8.649e-05 0.0001093 0.00% Castro::enforce_consistent_e() 1 8.291e-05 8.864e-05 9.409e-05 0.00% Amr::writeSmallPlotFile() 1 3.119e-05 5.875e-05 7.11e-05 0.00% Castro::finalize_advance() 10 5.776e-05 6.365e-05 6.788e-05 0.00% FabArrayBase::CPC::define() 2 2.235e-05 2.767e-05 4.082e-05 0.00% Castro::enforce_speed_limit() 62 2.765e-05 3.209e-05 3.979e-05 0.00% Castro::create_source_corrector() 10 1.586e-05 1.754e-05 2.002e-05 0.00% Gravity::swapTimeLevels() 10 1.365e-05 1.573e-05 1.92e-05 0.00% Amr::initSubcycle() 1 8.596e-06 1.087e-05 1.545e-05 0.00% Gravity::set_mass_offset() 10 6.258e-06 7.656e-06 8.524e-06 0.00% Castro::FluxRegFineAdd() 10 5.669e-06 6.811e-06 7.822e-06 0.00% Castro::retry_advance_ctu() 10 4.382e-06 5.863e-06 7.033e-06 0.00% DistributionMapping::Distribute() 1 1.049e-06 1.241e-06 1.637e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.04-26-g0d136ea53aed) finalized