MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.04-28-g56661522b4cd) initialized Starting run at 05:37:18 UTC on 2022-04-25. Successfully read inputs file ... Castro git describe: 22.04-28-g7e86dbe56 AMReX git describe: 22.04-28-g56661522b Microphysics git describe: 22.04-3-g3c498521 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013971348 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.333238951 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.334688137 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.326330639 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.312695559 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.310985398 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.334153098 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.294797559 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.288322902 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.290660383 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.291571806 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.0094603 seconds Ending run at 05:37:22 UTC on 2022-04-25. Run time = 3.304312019 Run time without initialization = 3.130485132 Average number of zones advanced per microsecond: 0.837 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.304 ... 3.304 ... 3.304 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1135 2.1756 2.2070 66.79% Gravity::make_radial_gravity() 21 0.3279 0.3409 0.359 10.87% Castro::do_advance_ctu() 10 0.05688 0.0891 0.1485 4.49% Castro::initData() 1 0.03823 0.07704 0.1145 3.47% Castro::estTimeStep() 21 0.02329 0.0616 0.1022 3.09% FabArray::setVal() 143 0.06697 0.07225 0.07741 2.34% FabArray::ParallelCopy_finish() 41 0.03204 0.04085 0.06951 2.10% Castro::reset_internal_energy() 63 0.04688 0.04878 0.05045 1.53% StateData::FillBoundary(geom) 41 0.0369 0.04095 0.04585 1.39% Castro::normalize_species() 62 0.04359 0.04403 0.04493 1.36% FabArray::ParallelCopy_nowait() 41 0.03355 0.04065 0.04311 1.30% FillPatchIterator::Initialize 41 0.0232 0.03045 0.03322 1.01% Gravity::interpolate_monopole_grav() 21 0.02765 0.02786 0.02832 0.86% Castro::construct_new_gravity_source() 10 0.02033 0.02342 0.02642 0.80% Castro::expand_state() 10 0.01166 0.01812 0.02081 0.63% Castro::computeTemp() 63 0.01709 0.01828 0.01887 0.57% Castro::initialize_do_advance() 10 0.01042 0.01628 0.0183 0.55% MultiFab::Saxpy() 20 0.01277 0.01457 0.01582 0.48% VisMF::Write(FabArray) 2 0.01203 0.0126 0.0151 0.46% Castro::initialize_advance() 10 0.01066 0.01251 0.01454 0.44% Gravity::get_new_grav_vector() 11 0.01002 0.01127 0.01343 0.41% MultiFab::contains_nan() 20 0.01047 0.01137 0.01241 0.38% Castro::construct_old_gravity_source() 10 0.007309 0.01097 0.01198 0.36% Amr::writePlotFile() 2 0.008571 0.01114 0.01169 0.35% FabArray::setDomainBndry() 41 0.006779 0.01008 0.01166 0.35% Gravity::get_old_grav_vector() 10 0.006918 0.009151 0.01034 0.31% Amr::defBaseLevel() 1 0.006447 0.006723 0.008355 0.25% Castro::construct_new_source() 50 0.0057 0.006346 0.007116 0.22% Castro::enforce_min_density() 62 0.005693 0.006255 0.006734 0.20% StateData::define() 4 0.004253 0.004341 0.004784 0.14% main() 1 0.003482 0.003745 0.004057 0.12% Castro::swap_state_time_levels() 10 0.002758 0.003485 0.003708 0.11% Castro::finalize_do_advance() 10 0.0004734 0.0008455 0.000999 0.03% Amr::coarseTimeStep() 10 0.0004696 0.0006625 0.0009586 0.03% Amr::timeStep() 10 0.0001743 0.000238 0.0005317 0.02% Amr::InitAmr() 1 0.0002717 0.0002955 0.0003743 0.01% Castro::clean_state() 62 0.0001244 0.0001391 0.0001541 0.00% StateDataPhysBCFunct::() 41 0.0001054 0.0001223 0.0001422 0.00% DistributionMapping::LeastUsedCPUs() 1 8.064e-06 0.0001029 0.0001182 0.00% Castro::enforce_consistent_e() 1 7.634e-05 8.513e-05 0.0001007 0.00% Amr::FinalizeInit() 1 3.479e-06 1.621e-05 9.76e-05 0.00% Castro::construct_old_source() 50 4.808e-05 7.153e-05 9.256e-05 0.00% FabArray::ParallelCopy() 41 5.81e-05 6.613e-05 7.823e-05 0.00% FillPatchSingleLevel 41 5.675e-05 6.747e-05 7.535e-05 0.00% Castro::subcycle_advance_ctu() 10 3.509e-05 5.09e-05 7.243e-05 0.00% Amr::writeSmallPlotFile() 1 3.464e-05 5.071e-05 6.983e-05 0.00% Castro::do_new_sources() 10 4.543e-05 5.859e-05 6.856e-05 0.00% Castro::do_old_sources() 10 4.739e-05 5.653e-05 6.408e-05 0.00% FabArrayBase::getCPC() 41 4.214e-05 5.005e-05 6.081e-05 0.00% Castro::apply_source_to_state() 20 3.126e-05 4.368e-05 5.886e-05 0.00% Castro::advance() 10 3.303e-05 3.909e-05 5.805e-05 0.00% Castro::construct_old_gravity() 10 4.472e-05 5.065e-05 5.671e-05 0.00% Castro::finalize_advance() 10 5.141e-05 5.389e-05 5.617e-05 0.00% Castro::construct_new_gravity() 10 3.979e-05 4.355e-05 5.066e-05 0.00% Castro::enforce_speed_limit() 62 2.676e-05 3.16e-05 3.449e-05 0.00% FabArrayBase::CPC::define() 2 2.368e-05 2.607e-05 3.017e-05 0.00% Castro::check_for_nan() 20 1.973e-05 2.241e-05 2.498e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.385e-05 1.89e-05 2.342e-05 0.00% Castro::create_source_corrector() 10 1.445e-05 1.623e-05 1.824e-05 0.00% Gravity::swapTimeLevels() 10 1.116e-05 1.319e-05 1.563e-05 0.00% Amr::initSubcycle() 1 8.035e-06 9.744e-06 1.562e-05 0.00% Castro::post_timestep() 10 7.566e-06 8.958e-06 1.012e-05 0.00% Castro::post_init() 1 4.023e-06 5.655e-06 9.997e-06 0.00% Gravity::set_mass_offset() 10 7.133e-06 8.26e-06 9.751e-06 0.00% Castro::computeNewDt() 9 6.97e-06 7.646e-06 8.644e-06 0.00% Castro::FluxRegFineAdd() 10 5.464e-06 6.577e-06 7.901e-06 0.00% Castro::retry_advance_ctu() 10 5.253e-06 5.997e-06 7.666e-06 0.00% Amr::InitializeInit() 1 2.063e-06 3.436e-06 7.067e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.674e-06 4.868e-06 6.617e-06 0.00% Castro::post_regrid() 1 2.171e-06 3.223e-06 4.959e-06 0.00% Castro::computeInitialDt() 2 3.369e-06 4.142e-06 4.916e-06 0.00% Amr::init() 1 1.803e-06 2.115e-06 2.566e-06 0.00% Amr::initialInit() 1 1.397e-06 1.681e-06 1.992e-06 0.00% DistributionMapping::Distribute() 1 9.8e-07 1.171e-06 1.351e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.304 3.304 3.304 100.00% Amr::coarseTimeStep() 10 3.117 3.117 3.117 94.33% Amr::timeStep() 10 3.107 3.108 3.108 94.06% Castro::advance() 10 3.091 3.092 3.092 93.56% Castro::subcycle_advance_ctu() 10 3.013 3.015 3.018 91.32% Castro::do_advance_ctu() 10 3.013 3.015 3.018 91.32% Castro::construct_ctu_hydro_source() 10 2.113 2.176 2.207 66.79% Gravity::make_radial_gravity() 21 0.3279 0.3409 0.359 10.87% Castro::construct_old_gravity() 10 0.1967 0.2071 0.2226 6.74% Gravity::get_old_grav_vector() 10 0.1959 0.2063 0.2219 6.72% Gravity::get_new_grav_vector() 11 0.2179 0.2193 0.2202 6.66% Castro::construct_new_gravity() 10 0.195 0.196 0.1969 5.96% Amr::init() 1 0.1733 0.1734 0.1734 5.25% FillPatchIterator::Initialize 41 0.156 0.1633 0.1723 5.21% Castro::initialize_do_advance() 10 0.1419 0.1538 0.1607 4.86% Amr::initialInit() 1 0.159 0.1592 0.1594 4.82% FillPatchSingleLevel 41 0.116 0.1228 0.1423 4.31% Amr::InitializeInit() 1 0.05625 0.09507 0.1326 4.01% Amr::defBaseLevel() 1 0.05624 0.09507 0.1326 4.01% Castro::initData() 1 0.04242 0.0811 0.1188 3.60% Castro::clean_state() 62 0.1142 0.1166 0.1186 3.59% Castro::expand_state() 10 0.1007 0.1065 0.1122 3.39% FabArray::ParallelCopy() 41 0.07503 0.08164 0.1032 3.12% Amr::FinalizeInit() 1 0.02673 0.06417 0.1031 3.12% Castro::estTimeStep() 21 0.02329 0.0616 0.1022 3.09% Castro::initialize_advance() 10 0.07395 0.07601 0.07838 2.37% Castro::computeInitialDt() 2 0.001714 0.03924 0.07809 2.36% FabArray::setVal() 143 0.06697 0.07225 0.07741 2.34% FabArray::ParallelCopy_finish() 41 0.03204 0.04085 0.06951 2.10% Castro::computeTemp() 63 0.06397 0.06707 0.06903 2.09% Castro::do_new_sources() 10 0.05724 0.0623 0.06824 2.07% Castro::reset_internal_energy() 63 0.04688 0.04878 0.05045 1.53% Castro::do_old_sources() 10 0.04089 0.04655 0.04804 1.45% StateDataPhysBCFunct::() 41 0.03701 0.04107 0.04598 1.39% StateData::FillBoundary(geom) 41 0.0369 0.04095 0.04585 1.39% Castro::normalize_species() 62 0.04359 0.04403 0.04493 1.36% FabArray::ParallelCopy_nowait() 41 0.03362 0.04072 0.04318 1.31% Castro::construct_new_source() 50 0.02603 0.02977 0.03354 1.01% Gravity::interpolate_monopole_grav() 21 0.02765 0.02786 0.02832 0.86% Castro::construct_new_gravity_source() 10 0.02033 0.02342 0.02642 0.80% Castro::post_init() 1 0.02407 0.02424 0.02441 0.74% Amr::writePlotFile() 2 0.02363 0.02374 0.02395 0.72% Castro::post_timestep() 10 0.01524 0.01583 0.01625 0.49% Castro::apply_source_to_state() 20 0.0128 0.01462 0.01587 0.48% MultiFab::Saxpy() 20 0.01277 0.01457 0.01582 0.48% VisMF::Write(FabArray) 2 0.01203 0.0126 0.0151 0.46% Castro::check_for_nan() 20 0.01049 0.01139 0.01243 0.38% MultiFab::contains_nan() 20 0.01047 0.01137 0.01241 0.38% Castro::construct_old_source() 50 0.007357 0.01104 0.01207 0.37% Castro::construct_old_gravity_source() 10 0.007309 0.01097 0.01198 0.36% FabArray::setDomainBndry() 41 0.006779 0.01008 0.01166 0.35% Castro::computeNewDt() 9 0.006817 0.007749 0.008542 0.26% Castro::enforce_min_density() 62 0.005693 0.006255 0.006734 0.20% AmrLevel::AmrLevel(dm) 1 0.004269 0.00436 0.004803 0.15% StateData::define() 4 0.004253 0.004341 0.004784 0.14% Castro::swap_state_time_levels() 10 0.002758 0.003485 0.003708 0.11% Castro::post_regrid() 1 0.001562 0.001607 0.001684 0.05% Castro::finalize_do_advance() 10 0.0004734 0.0008455 0.000999 0.03% Amr::InitAmr() 1 0.0002808 0.0003052 0.0003899 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.307e-05 0.0001089 0.000126 0.00% DistributionMapping::LeastUsedCPUs() 1 8.064e-06 0.0001029 0.0001182 0.00% Castro::enforce_consistent_e() 1 7.634e-05 8.513e-05 0.0001007 0.00% FabArrayBase::getCPC() 41 6.585e-05 7.612e-05 9.098e-05 0.00% Amr::writeSmallPlotFile() 1 3.464e-05 5.071e-05 6.983e-05 0.00% Castro::finalize_advance() 10 5.852e-05 6.047e-05 6.371e-05 0.00% Castro::enforce_speed_limit() 62 2.676e-05 3.16e-05 3.449e-05 0.00% FabArrayBase::CPC::define() 2 2.368e-05 2.607e-05 3.017e-05 0.00% Castro::create_source_corrector() 10 1.445e-05 1.623e-05 1.824e-05 0.00% Gravity::swapTimeLevels() 10 1.116e-05 1.319e-05 1.563e-05 0.00% Amr::initSubcycle() 1 8.035e-06 9.744e-06 1.562e-05 0.00% Gravity::set_mass_offset() 10 7.133e-06 8.26e-06 9.751e-06 0.00% Castro::FluxRegFineAdd() 10 5.464e-06 6.577e-06 7.901e-06 0.00% Castro::retry_advance_ctu() 10 5.253e-06 5.997e-06 7.666e-06 0.00% DistributionMapping::Distribute() 1 9.8e-07 1.171e-06 1.351e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.04-28-g56661522b4cd) finalized