MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.04-36-g511b3b038106) initialized Starting run at 01:00:26 UTC on 2022-04-28. Successfully read inputs file ... Castro git describe: 22.04-38-ga2cccc650 AMReX git describe: 22.04-36-g511b3b038 Microphysics git describe: 22.04-3-g3c498521 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013275898 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.340350264 [STEP 1] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.328781006 [STEP 2] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.31604324 [STEP 3] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.320215245 [STEP 4] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.319436459 [STEP 5] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.344873899 [STEP 6] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.299000563 [STEP 7] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.292733492 [STEP 8] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.293976609 [STEP 9] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.296048961 [STEP 10] FAB kilobyte spread across MPI nodes: [58480 ... 58480] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.021167223 seconds Ending run at 01:00:30 UTC on 2022-04-28. Run time = 3.355040928 Run time without initialization = 3.1759577 Average number of zones advanced per microsecond: 0.825 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.354 ... 3.355 ... 3.355 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1534 2.1849 2.2343 66.59% Gravity::make_radial_gravity() 21 0.3428 0.3534 0.3631 10.82% Castro::do_advance_ctu() 10 0.04332 0.09349 0.127 3.78% Castro::initData() 1 0.03968 0.0815 0.1163 3.47% Castro::estTimeStep() 21 0.01826 0.05995 0.09704 2.89% FabArray::setVal() 143 0.07009 0.07309 0.07672 2.29% FabArray::ParallelCopy_finish() 41 0.03498 0.04047 0.05286 1.58% Castro::reset_internal_energy() 63 0.04697 0.04962 0.05193 1.55% Castro::normalize_species() 62 0.04079 0.04235 0.04358 1.30% StateData::FillBoundary(geom) 41 0.04016 0.04129 0.04337 1.29% FabArray::ParallelCopy_nowait() 41 0.04104 0.04218 0.04303 1.28% FillPatchIterator::Initialize 41 0.02409 0.03143 0.03402 1.01% Gravity::interpolate_monopole_grav() 21 0.02772 0.02817 0.02877 0.86% Castro::construct_new_gravity_source() 10 0.02313 0.02486 0.02682 0.80% VisMF::Write(FabArray) 2 0.02298 0.02359 0.02596 0.77% Castro::expand_state() 10 0.013 0.01864 0.0217 0.65% Castro::computeTemp() 63 0.01712 0.01885 0.02029 0.60% Castro::initialize_do_advance() 10 0.01215 0.01658 0.01835 0.55% MultiFab::Saxpy() 20 0.01485 0.0161 0.01695 0.51% Castro::initialize_advance() 10 0.01058 0.01254 0.01461 0.44% Gravity::get_new_grav_vector() 11 0.01022 0.01131 0.01332 0.40% Castro::construct_old_gravity_source() 10 0.00973 0.01182 0.01267 0.38% MultiFab::contains_nan() 20 0.01052 0.01172 0.01263 0.38% FabArray::setDomainBndry() 41 0.006813 0.0105 0.01188 0.35% Amr::writePlotFile() 2 0.008717 0.01101 0.01167 0.35% Gravity::get_old_grav_vector() 10 0.008257 0.009217 0.01036 0.31% Amr::defBaseLevel() 1 0.006465 0.007138 0.007946 0.24% Castro::construct_new_source() 50 0.006483 0.006728 0.006983 0.21% Castro::enforce_min_density() 62 0.005927 0.006233 0.00659 0.20% StateData::define() 4 0.004245 0.004818 0.00603 0.18% Castro::swap_state_time_levels() 10 0.002919 0.00379 0.004267 0.13% main() 1 0.003354 0.003701 0.003891 0.12% Castro::finalize_do_advance() 10 0.0009065 0.001034 0.001135 0.03% Amr::coarseTimeStep() 10 0.0004202 0.0007325 0.001128 0.03% Amr::timeStep() 10 0.0001523 0.0002199 0.0004876 0.01% Amr::InitAmr() 1 0.0002777 0.0003468 0.0004662 0.01% DistributionMapping::LeastUsedCPUs() 1 7.578e-06 0.0001544 0.0002367 0.01% StateDataPhysBCFunct::() 41 0.0001234 0.000145 0.0001782 0.01% Castro::clean_state() 62 0.0001361 0.0001493 0.0001693 0.01% Castro::enforce_consistent_e() 1 7.78e-05 8.576e-05 0.0001001 0.00% Castro::construct_old_source() 50 5.769e-05 7.881e-05 9.973e-05 0.00% Amr::FinalizeInit() 1 3.424e-06 1.583e-05 9.645e-05 0.00% FillPatchSingleLevel 41 7.07e-05 7.535e-05 8.521e-05 0.00% FabArray::ParallelCopy() 41 6.216e-05 7.375e-05 8.297e-05 0.00% FabArrayBase::getCPC() 41 5.297e-05 6.17e-05 7.23e-05 0.00% Castro::do_old_sources() 10 5.397e-05 6.204e-05 7.198e-05 0.00% Amr::writeSmallPlotFile() 1 3.079e-05 5.573e-05 6.92e-05 0.00% Castro::subcycle_advance_ctu() 10 4.074e-05 5.762e-05 6.769e-05 0.00% Castro::construct_old_gravity() 10 5.035e-05 5.948e-05 6.681e-05 0.00% Castro::do_new_sources() 10 5.911e-05 6.305e-05 6.661e-05 0.00% Castro::construct_new_gravity() 10 4.043e-05 4.954e-05 6.47e-05 0.00% Castro::apply_source_to_state() 20 4.476e-05 5.327e-05 6.034e-05 0.00% Castro::finalize_advance() 10 4.849e-05 5.443e-05 5.856e-05 0.00% Castro::advance() 10 3.571e-05 4.116e-05 4.543e-05 0.00% Castro::enforce_speed_limit() 62 2.846e-05 3.425e-05 3.799e-05 0.00% Castro::check_for_nan() 20 2.335e-05 2.803e-05 3.077e-05 0.00% FabArrayBase::CPC::define() 2 2.207e-05 2.54e-05 3.045e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.696e-05 1.906e-05 2.693e-05 0.00% Castro::create_source_corrector() 10 1.54e-05 1.886e-05 2.342e-05 0.00% Castro::post_init() 1 9.071e-06 1.07e-05 2.008e-05 0.00% Gravity::swapTimeLevels() 10 1.255e-05 1.425e-05 1.67e-05 0.00% Castro::post_timestep() 10 8.752e-06 1.091e-05 1.664e-05 0.00% Amr::initSubcycle() 1 8.497e-06 1.097e-05 1.543e-05 0.00% Gravity::set_mass_offset() 10 7.038e-06 8.141e-06 9.975e-06 0.00% Castro::computeNewDt() 9 7.043e-06 7.802e-06 8.642e-06 0.00% Castro::FluxRegFineAdd() 10 5.329e-06 6.87e-06 7.81e-06 0.00% Amr::InitializeInit() 1 2.151e-06 3.089e-06 6.957e-06 0.00% Castro::retry_advance_ctu() 10 5.055e-06 5.83e-06 6.669e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.013e-06 4.857e-06 6.027e-06 0.00% Castro::post_regrid() 1 1.586e-06 3.171e-06 4.717e-06 0.00% Castro::computeInitialDt() 2 3.156e-06 3.621e-06 4.674e-06 0.00% Amr::init() 1 1.729e-06 2.212e-06 2.835e-06 0.00% Amr::initialInit() 1 1.15e-06 1.606e-06 1.764e-06 0.00% DistributionMapping::Distribute() 1 1.093e-06 1.32e-06 1.624e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.354 3.355 3.355 100.00% Amr::coarseTimeStep() 10 3.151 3.151 3.151 93.91% Amr::timeStep() 10 3.14 3.141 3.142 93.64% Castro::advance() 10 3.125 3.125 3.125 93.15% Castro::subcycle_advance_ctu() 10 3.046 3.049 3.051 90.94% Castro::do_advance_ctu() 10 3.046 3.048 3.051 90.94% Castro::construct_ctu_hydro_source() 10 2.153 2.185 2.234 66.59% Gravity::make_radial_gravity() 21 0.3428 0.3534 0.3631 10.82% Gravity::get_new_grav_vector() 11 0.2278 0.2286 0.2295 6.84% Castro::construct_old_gravity() 10 0.2043 0.2112 0.2195 6.54% Gravity::get_old_grav_vector() 10 0.2034 0.2104 0.2188 6.52% Castro::construct_new_gravity() 10 0.2019 0.2025 0.203 6.05% Amr::init() 1 0.1784 0.1786 0.1787 5.33% FillPatchIterator::Initialize 41 0.162 0.1663 0.1706 5.09% Amr::initialInit() 1 0.1649 0.1652 0.1656 4.94% Castro::initialize_do_advance() 10 0.1469 0.1563 0.1632 4.86% Amr::InitializeInit() 1 0.05632 0.09984 0.1356 4.04% Amr::defBaseLevel() 1 0.05632 0.09984 0.1356 4.04% FillPatchSingleLevel 41 0.1194 0.1243 0.1352 4.03% Castro::initData() 1 0.04372 0.08547 0.1198 3.57% Castro::clean_state() 62 0.1117 0.1163 0.1196 3.56% Castro::expand_state() 10 0.104 0.1088 0.1148 3.42% Amr::FinalizeInit() 1 0.02935 0.06539 0.1088 3.24% Castro::estTimeStep() 21 0.01826 0.05995 0.09704 2.89% FabArray::ParallelCopy() 41 0.07792 0.08281 0.09474 2.82% Castro::computeInitialDt() 2 0.001719 0.0376 0.0811 2.42% Castro::initialize_advance() 10 0.07391 0.07654 0.07946 2.37% FabArray::setVal() 143 0.07009 0.07309 0.07672 2.29% Castro::computeTemp() 63 0.06409 0.06847 0.07155 2.13% Castro::do_new_sources() 10 0.06111 0.06539 0.06962 2.07% FabArray::ParallelCopy_finish() 41 0.03498 0.04047 0.05286 1.58% Castro::reset_internal_energy() 63 0.04697 0.04962 0.05193 1.55% Castro::do_old_sources() 10 0.04821 0.04909 0.0502 1.50% Castro::normalize_species() 62 0.04079 0.04235 0.04358 1.30% StateDataPhysBCFunct::() 41 0.0403 0.04143 0.0435 1.30% StateData::FillBoundary(geom) 41 0.04016 0.04129 0.04337 1.29% FabArray::ParallelCopy_nowait() 41 0.04111 0.04227 0.04311 1.28% Amr::writePlotFile() 2 0.03427 0.0346 0.03476 1.04% Castro::construct_new_source() 50 0.02961 0.03158 0.03381 1.01% Gravity::interpolate_monopole_grav() 21 0.02772 0.02817 0.02877 0.86% Castro::post_init() 1 0.02705 0.02719 0.02739 0.82% Castro::construct_new_gravity_source() 10 0.02313 0.02486 0.02682 0.80% VisMF::Write(FabArray) 2 0.02298 0.02359 0.02596 0.77% Castro::apply_source_to_state() 20 0.0149 0.01615 0.01701 0.51% MultiFab::Saxpy() 20 0.01485 0.0161 0.01695 0.51% Castro::post_timestep() 10 0.01486 0.01552 0.01606 0.48% Castro::construct_old_source() 50 0.009788 0.0119 0.01277 0.38% Castro::construct_old_gravity_source() 10 0.00973 0.01182 0.01267 0.38% Castro::check_for_nan() 20 0.01055 0.01175 0.01265 0.38% MultiFab::contains_nan() 20 0.01052 0.01172 0.01263 0.38% FabArray::setDomainBndry() 41 0.006813 0.0105 0.01188 0.35% Castro::computeNewDt() 9 0.006985 0.008221 0.008916 0.27% Castro::enforce_min_density() 62 0.005927 0.006233 0.00659 0.20% AmrLevel::AmrLevel(dm) 1 0.004264 0.004837 0.006057 0.18% StateData::define() 4 0.004245 0.004818 0.00603 0.18% Castro::swap_state_time_levels() 10 0.002919 0.00379 0.004267 0.13% Castro::post_regrid() 1 0.001509 0.001612 0.001942 0.06% Castro::finalize_do_advance() 10 0.0009065 0.001034 0.001135 0.03% Amr::InitAmr() 1 0.0002869 0.0003578 0.0004814 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.421e-05 0.0001606 0.0002438 0.01% DistributionMapping::LeastUsedCPUs() 1 7.578e-06 0.0001544 0.0002367 0.01% Castro::enforce_consistent_e() 1 7.78e-05 8.576e-05 0.0001001 0.00% FabArrayBase::getCPC() 41 7.529e-05 8.71e-05 9.777e-05 0.00% Amr::writeSmallPlotFile() 1 3.079e-05 5.573e-05 6.92e-05 0.00% Castro::finalize_advance() 10 5.516e-05 6.13e-05 6.637e-05 0.00% Castro::enforce_speed_limit() 62 2.846e-05 3.425e-05 3.799e-05 0.00% FabArrayBase::CPC::define() 2 2.207e-05 2.54e-05 3.045e-05 0.00% Castro::create_source_corrector() 10 1.54e-05 1.886e-05 2.342e-05 0.00% Gravity::swapTimeLevels() 10 1.255e-05 1.425e-05 1.67e-05 0.00% Amr::initSubcycle() 1 8.497e-06 1.097e-05 1.543e-05 0.00% Gravity::set_mass_offset() 10 7.038e-06 8.141e-06 9.975e-06 0.00% Castro::FluxRegFineAdd() 10 5.329e-06 6.87e-06 7.81e-06 0.00% Castro::retry_advance_ctu() 10 5.055e-06 5.83e-06 6.669e-06 0.00% DistributionMapping::Distribute() 1 1.093e-06 1.32e-06 1.624e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.04-36-g511b3b038106) finalized