MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.04-37-g3cc4a66759c9) initialized Starting run at 20:35:17 UTC on 2022-04-28. Successfully read inputs file ... Castro git describe: 22.04-43-gb161067b6 AMReX git describe: 22.04-37-g3cc4a6675 Microphysics git describe: 22.04-3-g3c498521 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01444359 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.354673114 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.329354613 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.340312111 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.32108986 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.322372004 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.340387938 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.302315084 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.301404973 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.2998041 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.298419973 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009806772 seconds Ending run at 20:35:21 UTC on 2022-04-28. Run time = 3.45603541 Run time without initialization = 3.223605491 Average number of zones advanced per microsecond: 0.813 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.455 ... 3.456 ... 3.456 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2122 2.2579 2.2832 66.06% Gravity::make_radial_gravity() 21 0.339 0.3534 0.3653 10.57% Castro::initData() 1 0.03832 0.08932 0.159 4.60% Castro::estTimeStep() 21 0.02244 0.09606 0.1506 4.36% Castro::do_advance_ctu() 10 0.06398 0.08974 0.1377 3.98% FabArray::setVal() 143 0.06534 0.07119 0.08084 2.34% FabArray::ParallelCopy_finish() 41 0.03725 0.05036 0.07852 2.27% Castro::reset_internal_energy(Fab) 1008 0.04883 0.05007 0.05172 1.50% FabArray::ParallelCopy_nowait() 41 0.03355 0.04093 0.04454 1.29% StateData::FillBoundary(geom) 41 0.03777 0.0413 0.0445 1.29% Castro::normalize_species() 62 0.04156 0.04253 0.04376 1.27% FillPatchIterator::Initialize 41 0.02429 0.03108 0.0374 1.08% Gravity::interpolate_monopole_grav() 21 0.02774 0.02814 0.02888 0.84% Castro::construct_new_gravity_source() 10 0.02031 0.02287 0.0247 0.71% Castro::expand_state() 10 0.01155 0.01833 0.02446 0.71% Castro::computeTemp() 63 0.01806 0.01881 0.01932 0.56% Castro::initialize_do_advance() 10 0.01038 0.01599 0.018 0.52% MultiFab::Saxpy() 20 0.01197 0.01378 0.01498 0.43% VisMF::Write(FabArray) 2 0.01224 0.01273 0.01484 0.43% FabArray::setDomainBndry() 41 0.006632 0.0106 0.01467 0.42% Castro::initialize_advance() 10 0.008585 0.01136 0.01379 0.40% Gravity::get_new_grav_vector() 11 0.01025 0.01123 0.01291 0.37% MultiFab::contains_nan() 20 0.01058 0.01109 0.01212 0.35% Amr::writePlotFile() 2 0.009623 0.01092 0.0117 0.34% Castro::construct_old_gravity_source() 10 0.006735 0.01009 0.01114 0.32% Gravity::get_old_grav_vector() 10 0.006852 0.009076 0.01074 0.31% Castro::initMFs() 1 0.005203 0.006125 0.008397 0.24% Castro::enforce_min_density() 62 0.006521 0.006661 0.006967 0.20% Castro::construct_new_source() 50 0.00564 0.006324 0.006556 0.19% StateData::define() 4 0.004431 0.005001 0.006417 0.19% main() 1 0.003646 0.003965 0.004324 0.13% Castro::swap_state_time_levels() 10 0.002768 0.003518 0.003728 0.11% Castro::buildMetrics() 1 0.001225 0.0014 0.001816 0.05% Castro::finalize_do_advance() 10 0.0004561 0.0008908 0.001033 0.03% Amr::coarseTimeStep() 10 0.0003478 0.0005245 0.000699 0.02% Amr::InitAmr() 1 0.0002685 0.0003343 0.0004596 0.01% Amr::timeStep() 10 0.0001753 0.0002256 0.0004406 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002867 0.000302 0.0003235 0.01% DistributionMapping::LeastUsedCPUs() 1 1.024e-05 0.0001519 0.0002127 0.01% StateDataPhysBCFunct::() 41 0.0001271 0.0001389 0.0001737 0.01% Castro::clean_state() 62 0.0001481 0.0001588 0.0001693 0.00% Castro::enforce_consistent_e() 1 8.538e-05 0.0001043 0.0001403 0.00% FillPatchSingleLevel 41 6.23e-05 7.313e-05 9.797e-05 0.00% FabArray::ParallelCopy() 41 5.918e-05 6.776e-05 8.864e-05 0.00% Castro::construct_old_source() 50 4.297e-05 6.626e-05 8.226e-05 0.00% Amr::FinalizeInit() 1 3.965e-06 1.433e-05 8.183e-05 0.00% Castro::Castro() 1 4.892e-05 6.048e-05 7.08e-05 0.00% Castro::do_new_sources() 10 5.427e-05 6.245e-05 7.011e-05 0.00% Castro::subcycle_advance_ctu() 10 3.563e-05 5.608e-05 6.978e-05 0.00% Castro::advance() 10 3.406e-05 4.419e-05 6.64e-05 0.00% Castro::do_old_sources() 10 4.222e-05 5.68e-05 6.521e-05 0.00% Amr::writeSmallPlotFile() 1 2.597e-05 5.529e-05 6.343e-05 0.00% FabArrayBase::getCPC() 41 4.627e-05 5.397e-05 6.053e-05 0.00% Castro::apply_source_to_state() 20 3.982e-05 4.799e-05 5.758e-05 0.00% Castro::construct_old_gravity() 10 3.647e-05 4.757e-05 5.687e-05 0.00% Castro::construct_new_gravity() 10 3.561e-05 4.31e-05 5.527e-05 0.00% Castro::finalize_advance() 10 5e-05 5.335e-05 5.524e-05 0.00% FabArrayBase::CPC::define() 2 2.394e-05 2.82e-05 3.738e-05 0.00% Amr::defBaseLevel() 1 2.377e-05 2.928e-05 3.685e-05 0.00% Castro::enforce_speed_limit() 62 2.68e-05 2.964e-05 3.398e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.942e-05 2.384e-05 2.805e-05 0.00% Castro::check_for_nan() 20 1.823e-05 2.111e-05 2.338e-05 0.00% Gravity::swapTimeLevels() 10 9.496e-06 1.415e-05 2.189e-05 0.00% Castro::post_init() 1 8.413e-06 1.073e-05 1.503e-05 0.00% Amr::initSubcycle() 1 8.306e-06 1.046e-05 1.501e-05 0.00% Castro::create_source_corrector() 10 8.269e-06 1.076e-05 1.208e-05 0.00% Castro::post_timestep() 10 8.302e-06 9.961e-06 1.169e-05 0.00% Castro::FluxRegCrseInit 10 9.301e-06 1.024e-05 1.127e-05 0.00% Gravity::set_mass_offset() 10 9.644e-06 1.052e-05 1.121e-05 0.00% Castro::computeNewDt() 9 9.041e-06 9.625e-06 1.093e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.103e-06 5.671e-06 8.606e-06 0.00% Castro::retry_advance_ctu() 10 4.114e-06 5.189e-06 6.292e-06 0.00% Amr::InitializeInit() 1 2.017e-06 2.954e-06 6.142e-06 0.00% Castro::computeInitialDt() 2 3.814e-06 4.464e-06 5.361e-06 0.00% Castro::post_regrid() 1 2.569e-06 3.577e-06 5.014e-06 0.00% Amr::init() 1 1.977e-06 2.359e-06 2.712e-06 0.00% Castro::FluxRegFineAdd() 10 2.099e-06 2.397e-06 2.626e-06 0.00% Amr::initialInit() 1 1.24e-06 1.648e-06 2.304e-06 0.00% DistributionMapping::Distribute() 1 1.078e-06 1.5e-06 1.753e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.455 3.456 3.456 100.00% Amr::coarseTimeStep() 10 3.21 3.21 3.21 92.87% Amr::timeStep() 10 3.2 3.201 3.201 92.62% Castro::advance() 10 3.184 3.185 3.185 92.15% Castro::subcycle_advance_ctu() 10 3.104 3.111 3.114 90.10% Castro::do_advance_ctu() 10 3.104 3.111 3.114 90.09% Castro::construct_ctu_hydro_source() 10 2.212 2.258 2.283 66.06% Gravity::make_radial_gravity() 21 0.339 0.3534 0.3653 10.57% Amr::init() 1 0.2318 0.2319 0.232 6.71% Gravity::get_new_grav_vector() 11 0.2278 0.2293 0.2304 6.67% Castro::construct_old_gravity() 10 0.1987 0.2107 0.2213 6.40% Gravity::get_old_grav_vector() 10 0.1973 0.2098 0.2207 6.39% Amr::initialInit() 1 0.2173 0.2182 0.2187 6.33% Castro::construct_new_gravity() 10 0.1967 0.1978 0.1992 5.76% FillPatchIterator::Initialize 41 0.1565 0.1746 0.1835 5.31% Amr::InitializeInit() 1 0.05598 0.1088 0.1827 5.29% Amr::defBaseLevel() 1 0.05598 0.1087 0.1827 5.29% Castro::initialize_do_advance() 10 0.1489 0.1636 0.1735 5.02% Castro::initData() 1 0.04237 0.09375 0.1642 4.75% Amr::FinalizeInit() 1 0.03586 0.1094 0.1624 4.70% FillPatchSingleLevel 41 0.1229 0.133 0.1525 4.41% Castro::estTimeStep() 21 0.02244 0.09606 0.1506 4.36% Castro::computeInitialDt() 2 0.002052 0.07612 0.129 3.73% Castro::expand_state() 10 0.09985 0.1169 0.1266 3.66% Castro::clean_state() 62 0.1153 0.1174 0.1195 3.46% FabArray::ParallelCopy() 41 0.08194 0.09144 0.1122 3.25% FabArray::setVal() 143 0.06534 0.07119 0.08084 2.34% Castro::initialize_advance() 10 0.07073 0.07351 0.08062 2.33% FabArray::ParallelCopy_finish() 41 0.03725 0.05036 0.07852 2.27% Castro::computeTemp() 63 0.06757 0.06919 0.07115 2.06% Castro::do_new_sources() 10 0.0571 0.06198 0.0657 1.90% Castro::reset_internal_energy(MultiFab) 63 0.04912 0.05037 0.05203 1.51% Castro::reset_internal_energy(Fab) 1008 0.04883 0.05007 0.05172 1.50% Castro::do_old_sources() 10 0.03906 0.04605 0.04879 1.41% StateDataPhysBCFunct::() 41 0.03791 0.04144 0.04463 1.29% FabArray::ParallelCopy_nowait() 41 0.03364 0.04101 0.04462 1.29% StateData::FillBoundary(geom) 41 0.03777 0.0413 0.0445 1.29% Castro::normalize_species() 62 0.04156 0.04253 0.04376 1.27% Castro::post_init() 1 0.03166 0.03223 0.03307 0.96% Castro::construct_new_source() 50 0.02595 0.0292 0.03126 0.90% Gravity::interpolate_monopole_grav() 21 0.02774 0.02814 0.02888 0.84% Castro::construct_new_gravity_source() 10 0.02031 0.02287 0.0247 0.71% Amr::writePlotFile() 2 0.02303 0.02365 0.02447 0.71% Castro::post_timestep() 10 0.01555 0.0158 0.01601 0.46% Castro::apply_source_to_state() 20 0.01202 0.01383 0.01504 0.44% MultiFab::Saxpy() 20 0.01197 0.01378 0.01498 0.43% VisMF::Write(FabArray) 2 0.01224 0.01273 0.01484 0.43% FabArray::setDomainBndry() 41 0.006632 0.0106 0.01467 0.42% Castro::check_for_nan() 20 0.01061 0.01111 0.01214 0.35% MultiFab::contains_nan() 20 0.01058 0.01109 0.01212 0.35% Castro::Castro() 1 0.008885 0.009788 0.01206 0.35% Castro::construct_old_source() 50 0.006778 0.01015 0.01122 0.32% Castro::construct_old_gravity_source() 10 0.006735 0.01009 0.01114 0.32% Castro::initMFs() 1 0.005203 0.006125 0.008397 0.24% Castro::computeNewDt() 9 0.006849 0.007472 0.007965 0.23% Castro::enforce_min_density() 62 0.006521 0.006661 0.006967 0.20% AmrLevel::AmrLevel(dm) 1 0.004455 0.005025 0.006442 0.19% StateData::define() 4 0.004431 0.005001 0.006417 0.19% Castro::swap_state_time_levels() 10 0.002768 0.003518 0.003728 0.11% Castro::post_regrid() 1 0.001598 0.002006 0.003091 0.09% Castro::buildMetrics() 1 0.001344 0.001548 0.002035 0.06% Castro::finalize_do_advance() 10 0.0004561 0.0008908 0.001033 0.03% Amr::InitAmr() 1 0.0002778 0.0003448 0.0004745 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.603e-05 0.0001591 0.0002219 0.01% DistributionMapping::LeastUsedCPUs() 1 1.024e-05 0.0001519 0.0002127 0.01% Castro::enforce_consistent_e() 1 8.538e-05 0.0001043 0.0001403 0.00% FabArrayBase::getCPC() 41 7.209e-05 8.217e-05 9.234e-05 0.00% Castro::finalize_advance() 10 6.354e-05 6.599e-05 6.857e-05 0.00% Amr::writeSmallPlotFile() 1 2.597e-05 5.529e-05 6.343e-05 0.00% FabArrayBase::CPC::define() 2 2.394e-05 2.82e-05 3.738e-05 0.00% Castro::enforce_speed_limit() 62 2.68e-05 2.964e-05 3.398e-05 0.00% Gravity::swapTimeLevels() 10 9.496e-06 1.415e-05 2.189e-05 0.00% Amr::initSubcycle() 1 8.306e-06 1.046e-05 1.501e-05 0.00% Castro::create_source_corrector() 10 8.269e-06 1.076e-05 1.208e-05 0.00% Castro::FluxRegCrseInit 10 9.301e-06 1.024e-05 1.127e-05 0.00% Gravity::set_mass_offset() 10 9.644e-06 1.052e-05 1.121e-05 0.00% Castro::retry_advance_ctu() 10 4.114e-06 5.189e-06 6.292e-06 0.00% Castro::FluxRegFineAdd() 10 2.099e-06 2.397e-06 2.626e-06 0.00% DistributionMapping::Distribute() 1 1.078e-06 1.5e-06 1.753e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.04-37-g3cc4a66759c9) finalized