MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-3-gdf9b6944a6d5) initialized Starting run at 23:53:16 UTC on 2022-05-02. Successfully read inputs file ... Castro git describe: 22.05-3-g7c11e57ab AMReX git describe: 22.05-3-gdf9b6944a Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012637146 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355568676 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.383585724 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.316516884 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.317095176 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.318349559 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.346489701 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.304215682 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.298536162 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.299309682 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.297578115 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009446452 seconds Ending run at 23:53:20 UTC on 2022-05-02. Run time = 3.438361596 Run time without initialization = 3.249437714 Average number of zones advanced per microsecond: 0.807 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.438 ... 3.438 ... 3.438 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2212 2.2468 2.3041 67.01% Gravity::make_radial_gravity() 21 0.3471 0.3597 0.3654 10.63% Castro::do_advance_ctu() 10 0.04451 0.1043 0.1293 3.76% Castro::initData() 1 0.03821 0.08112 0.1264 3.68% Castro::estTimeStep() 21 0.03039 0.07575 0.1249 3.63% FabArray::setVal() 143 0.06807 0.07379 0.07957 2.31% Castro::reset_internal_energy(Fab) 1008 0.04789 0.0507 0.05494 1.60% FabArray::ParallelCopy_finish() 41 0.03523 0.04422 0.0492 1.43% Castro::normalize_species() 62 0.04129 0.04236 0.04447 1.29% StateData::FillBoundary(geom) 41 0.03933 0.04111 0.04393 1.28% FabArray::ParallelCopy_nowait() 41 0.03918 0.04054 0.04188 1.22% FillPatchIterator::Initialize 41 0.02475 0.02949 0.03258 0.95% Gravity::interpolate_monopole_grav() 21 0.02763 0.0279 0.02862 0.83% Castro::construct_new_gravity_source() 10 0.02231 0.02468 0.02859 0.83% Castro::computeTemp() 63 0.01779 0.01898 0.02013 0.59% Castro::expand_state() 10 0.01468 0.01816 0.02005 0.58% Castro::initialize_do_advance() 10 0.01221 0.0163 0.01803 0.52% MultiFab::Saxpy() 20 0.01378 0.01582 0.01747 0.51% Castro::initialize_advance() 10 0.01073 0.01274 0.01486 0.43% MultiFab::contains_nan() 20 0.01085 0.01201 0.01423 0.41% VisMF::Write(FabArray) 2 0.01125 0.0119 0.01399 0.41% Castro::construct_old_gravity_source() 10 0.009559 0.01131 0.01311 0.38% Gravity::get_new_grav_vector() 11 0.01012 0.01129 0.01253 0.36% Gravity::get_old_grav_vector() 10 0.008566 0.009448 0.01165 0.34% Amr::writePlotFile() 2 0.008356 0.01055 0.01117 0.32% FabArray::setDomainBndry() 41 0.007548 0.009637 0.01099 0.32% Castro::initMFs() 1 0.005222 0.006192 0.008421 0.24% Castro::construct_new_source() 50 0.006316 0.006673 0.00722 0.21% Castro::enforce_min_density() 62 0.005885 0.006254 0.006587 0.19% StateData::define() 4 0.004315 0.005002 0.006396 0.19% main() 1 0.003614 0.003753 0.003967 0.12% Castro::swap_state_time_levels() 10 0.002929 0.003782 0.003937 0.11% Castro::buildMetrics() 1 0.001221 0.001425 0.001831 0.05% Amr::coarseTimeStep() 10 0.0003797 0.0007031 0.001496 0.04% Castro::finalize_do_advance() 10 0.000841 0.001158 0.001286 0.04% Amr::InitAmr() 1 0.0002565 0.0003238 0.0005602 0.02% Amr::timeStep() 10 0.0001583 0.0002272 0.0004819 0.01% DistributionMapping::LeastUsedCPUs() 1 8.65e-06 0.0002894 0.0003668 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002846 0.0003079 0.0003489 0.01% Castro::clean_state() 62 0.000144 0.0001578 0.0001672 0.00% StateDataPhysBCFunct::() 41 0.0001228 0.0001402 0.0001617 0.00% Castro::construct_old_gravity() 10 4.886e-05 6.293e-05 0.0001007 0.00% Amr::FinalizeInit() 1 4.16e-06 1.656e-05 9.966e-05 0.00% Castro::enforce_consistent_e() 1 7.897e-05 8.685e-05 9.404e-05 0.00% Castro::construct_old_source() 50 6.461e-05 7.572e-05 9.244e-05 0.00% FabArray::ParallelCopy() 41 5.606e-05 6.711e-05 9.041e-05 0.00% Castro::do_new_sources() 10 5.7e-05 6.623e-05 8.057e-05 0.00% FillPatchSingleLevel 41 6.563e-05 7.229e-05 7.938e-05 0.00% Castro::subcycle_advance_ctu() 10 4.182e-05 6.017e-05 7.653e-05 0.00% Castro::Castro() 1 5.31e-05 6.092e-05 7.495e-05 0.00% Castro::do_old_sources() 10 5.799e-05 6.688e-05 7.243e-05 0.00% FabArrayBase::getCPC() 41 4.937e-05 5.821e-05 7.053e-05 0.00% Castro::apply_source_to_state() 20 4.042e-05 5.217e-05 6.89e-05 0.00% Amr::writeSmallPlotFile() 1 2.507e-05 5.417e-05 6.873e-05 0.00% Castro::finalize_advance() 10 5.011e-05 5.271e-05 5.645e-05 0.00% Castro::construct_new_gravity() 10 3.719e-05 4.545e-05 5.355e-05 0.00% FabArrayBase::CPC::define() 2 2.202e-05 2.915e-05 4.518e-05 0.00% Castro::advance() 10 4.018e-05 4.301e-05 4.47e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.307e-05 2.231e-05 3.736e-05 0.00% Amr::defBaseLevel() 1 2.16e-05 2.701e-05 3.166e-05 0.00% Castro::enforce_speed_limit() 62 2.54e-05 2.86e-05 3.034e-05 0.00% Castro::check_for_nan() 20 2.103e-05 2.343e-05 2.879e-05 0.00% Castro::create_source_corrector() 10 8.019e-06 1.088e-05 2.027e-05 0.00% Gravity::swapTimeLevels() 10 1.228e-05 1.495e-05 1.874e-05 0.00% Amr::initSubcycle() 1 7.961e-06 1e-05 1.439e-05 0.00% Gravity::set_mass_offset() 10 7.329e-06 1.017e-05 1.175e-05 0.00% Castro::post_timestep() 10 8.838e-06 1.042e-05 1.172e-05 0.00% Castro::post_init() 1 8.421e-06 1.043e-05 1.162e-05 0.00% Castro::FluxRegCrseInit 10 8.801e-06 1.012e-05 1.149e-05 0.00% Castro::computeNewDt() 9 8e-06 9.01e-06 9.837e-06 0.00% Amr::InitializeInit() 1 1.911e-06 3.103e-06 8.658e-06 0.00% Castro::retry_advance_ctu() 10 4.793e-06 5.417e-06 5.851e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.996e-06 4.663e-06 5.497e-06 0.00% Castro::computeInitialDt() 2 3.157e-06 3.998e-06 4.857e-06 0.00% Castro::post_regrid() 1 1.811e-06 3.171e-06 4.757e-06 0.00% Castro::FluxRegFineAdd() 10 2.052e-06 2.51e-06 3.068e-06 0.00% Amr::init() 1 1.856e-06 2.294e-06 3.007e-06 0.00% Amr::initialInit() 1 1.204e-06 1.553e-06 2.005e-06 0.00% DistributionMapping::Distribute() 1 1.079e-06 1.331e-06 1.56e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.438 3.438 3.438 100.00% Amr::coarseTimeStep() 10 3.236 3.236 3.236 94.12% Amr::timeStep() 10 3.225 3.226 3.227 93.84% Castro::advance() 10 3.209 3.21 3.21 93.35% Castro::subcycle_advance_ctu() 10 3.128 3.132 3.135 91.19% Castro::do_advance_ctu() 10 3.128 3.132 3.135 91.19% Castro::construct_ctu_hydro_source() 10 2.221 2.247 2.304 67.01% Gravity::make_radial_gravity() 21 0.3471 0.3597 0.3654 10.63% Castro::construct_old_gravity() 10 0.2163 0.2259 0.2309 6.72% Gravity::get_old_grav_vector() 10 0.2153 0.225 0.2302 6.69% Gravity::get_new_grav_vector() 11 0.2189 0.2199 0.2213 6.44% Castro::construct_new_gravity() 10 0.1958 0.1967 0.1975 5.75% Amr::init() 1 0.1882 0.1884 0.1885 5.48% Amr::initialInit() 1 0.1753 0.1755 0.1757 5.11% FillPatchIterator::Initialize 41 0.1551 0.1654 0.1749 5.09% Castro::initialize_do_advance() 10 0.1485 0.1552 0.1615 4.70% Amr::InitializeInit() 1 0.0559 0.1001 0.1488 4.33% Amr::defBaseLevel() 1 0.0559 0.1001 0.1488 4.33% FillPatchSingleLevel 41 0.1208 0.1262 0.1313 3.82% Castro::initData() 1 0.04203 0.0849 0.1301 3.78% Castro::estTimeStep() 21 0.03039 0.07575 0.1249 3.63% Castro::clean_state() 62 0.1127 0.1179 0.1226 3.57% Amr::FinalizeInit() 1 0.02659 0.07544 0.1197 3.48% Castro::expand_state() 10 0.1036 0.1075 0.1129 3.28% Castro::computeInitialDt() 2 0.001685 0.05052 0.09477 2.76% FabArray::ParallelCopy() 41 0.07687 0.08491 0.09002 2.62% Castro::initialize_advance() 10 0.07427 0.07716 0.08167 2.38% FabArray::setVal() 143 0.06807 0.07379 0.07957 2.31% Castro::computeTemp() 63 0.06609 0.06999 0.07541 2.19% Castro::do_new_sources() 10 0.06032 0.06499 0.07228 2.10% Castro::reset_internal_energy(MultiFab) 63 0.04817 0.05101 0.05528 1.61% Castro::reset_internal_energy(Fab) 1008 0.04789 0.0507 0.05494 1.60% Castro::do_old_sources() 10 0.04624 0.04957 0.05454 1.59% FabArray::ParallelCopy_finish() 41 0.03523 0.04422 0.0492 1.43% Castro::normalize_species() 62 0.04129 0.04236 0.04447 1.29% StateDataPhysBCFunct::() 41 0.03947 0.04125 0.04406 1.28% StateData::FillBoundary(geom) 41 0.03933 0.04111 0.04393 1.28% FabArray::ParallelCopy_nowait() 41 0.03927 0.04062 0.04196 1.22% Castro::construct_new_source() 50 0.02869 0.03136 0.03581 1.04% Gravity::interpolate_monopole_grav() 21 0.02763 0.0279 0.02862 0.83% Castro::construct_new_gravity_source() 10 0.02231 0.02468 0.02859 0.83% Castro::post_init() 1 0.02397 0.02422 0.02439 0.71% Amr::writePlotFile() 2 0.02232 0.02245 0.0227 0.66% Castro::apply_source_to_state() 20 0.01382 0.01587 0.01752 0.51% MultiFab::Saxpy() 20 0.01378 0.01582 0.01747 0.51% Castro::post_timestep() 10 0.01546 0.01602 0.01676 0.49% Castro::check_for_nan() 20 0.01087 0.01204 0.01426 0.41% MultiFab::contains_nan() 20 0.01085 0.01201 0.01423 0.41% VisMF::Write(FabArray) 2 0.01125 0.0119 0.01399 0.41% Castro::construct_old_source() 50 0.009624 0.01138 0.01318 0.38% Castro::construct_old_gravity_source() 10 0.009559 0.01131 0.01311 0.38% Castro::Castro() 1 0.008522 0.009816 0.01205 0.35% FabArray::setDomainBndry() 41 0.007548 0.009637 0.01099 0.32% Castro::computeNewDt() 9 0.007336 0.008506 0.009534 0.28% Castro::initMFs() 1 0.005222 0.006192 0.008421 0.24% Castro::enforce_min_density() 62 0.005885 0.006254 0.006587 0.19% AmrLevel::AmrLevel(dm) 1 0.004328 0.005024 0.006419 0.19% StateData::define() 4 0.004315 0.005002 0.006396 0.19% Castro::swap_state_time_levels() 10 0.002929 0.003782 0.003937 0.11% Castro::buildMetrics() 1 0.001333 0.001575 0.002053 0.06% Castro::post_regrid() 1 0.001566 0.001594 0.001664 0.05% Castro::finalize_do_advance() 10 0.000841 0.001158 0.001286 0.04% Amr::InitAmr() 1 0.0002651 0.0003338 0.0005745 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.422e-05 0.0002954 0.0003738 0.01% DistributionMapping::LeastUsedCPUs() 1 8.65e-06 0.0002894 0.0003668 0.01% FabArrayBase::getCPC() 41 7.401e-05 8.736e-05 0.0001014 0.00% Castro::enforce_consistent_e() 1 7.897e-05 8.685e-05 9.404e-05 0.00% Castro::finalize_advance() 10 6.232e-05 6.534e-05 6.875e-05 0.00% Amr::writeSmallPlotFile() 1 2.507e-05 5.417e-05 6.873e-05 0.00% FabArrayBase::CPC::define() 2 2.202e-05 2.915e-05 4.518e-05 0.00% Castro::enforce_speed_limit() 62 2.54e-05 2.86e-05 3.034e-05 0.00% Castro::create_source_corrector() 10 8.019e-06 1.088e-05 2.027e-05 0.00% Gravity::swapTimeLevels() 10 1.228e-05 1.495e-05 1.874e-05 0.00% Amr::initSubcycle() 1 7.961e-06 1e-05 1.439e-05 0.00% Gravity::set_mass_offset() 10 7.329e-06 1.017e-05 1.175e-05 0.00% Castro::FluxRegCrseInit 10 8.801e-06 1.012e-05 1.149e-05 0.00% Castro::retry_advance_ctu() 10 4.793e-06 5.417e-06 5.851e-06 0.00% Castro::FluxRegFineAdd() 10 2.052e-06 2.51e-06 3.068e-06 0.00% DistributionMapping::Distribute() 1 1.079e-06 1.331e-06 1.56e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-3-gdf9b6944a6d5) finalized