MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.04-39-g50466d11e7b2) initialized Starting run at 05:38:14 UTC on 2022-05-02. Successfully read inputs file ... Castro git describe: 22.04-59-gdd7643ce9 AMReX git describe: 22.04-39-g50466d11e Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013303813 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357957698 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347697544 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.324144709 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.316583994 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.312713047 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.344973007 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.301341033 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.296904923 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.296418675 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.298543156 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009231144 seconds Ending run at 05:38:17 UTC on 2022-05-02. Run time = 3.434295455 Run time without initialization = 3.208683084 Average number of zones advanced per microsecond: 0.817 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.434 ... 3.434 ... 3.434 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2051 2.2410 2.2651 65.95% Gravity::make_radial_gravity() 21 0.3489 0.3671 0.3758 10.94% Castro::estTimeStep() 21 0.02927 0.1019 0.1589 4.63% Castro::initData() 1 0.03779 0.0872 0.1549 4.51% Castro::do_advance_ctu() 10 0.06131 0.07905 0.1146 3.34% FabArray::ParallelCopy_finish() 41 0.03325 0.04593 0.07879 2.29% FabArray::setVal() 143 0.06168 0.07018 0.07764 2.26% Castro::reset_internal_energy(Fab) 1008 0.04645 0.04967 0.05535 1.61% Castro::normalize_species() 62 0.04154 0.04303 0.04602 1.34% StateData::FillBoundary(geom) 41 0.03827 0.04123 0.04284 1.25% FabArray::ParallelCopy_nowait() 41 0.03466 0.03908 0.0404 1.18% FillPatchIterator::Initialize 41 0.02383 0.02884 0.03174 0.92% Gravity::interpolate_monopole_grav() 21 0.02738 0.02788 0.02832 0.82% Castro::construct_new_gravity_source() 10 0.02196 0.0233 0.02727 0.79% Castro::expand_state() 10 0.01205 0.01763 0.02055 0.60% Castro::computeTemp() 63 0.01713 0.0183 0.01935 0.56% Castro::initialize_do_advance() 10 0.0108 0.01598 0.0178 0.52% MultiFab::Saxpy() 20 0.01205 0.01421 0.01622 0.47% MultiFab::contains_nan() 20 0.01046 0.0116 0.01486 0.43% VisMF::Write(FabArray) 2 0.01161 0.01212 0.01422 0.41% Castro::initialize_advance() 10 0.00815 0.0116 0.01394 0.41% Gravity::get_new_grav_vector() 11 0.01017 0.01093 0.01292 0.38% Gravity::get_old_grav_vector() 10 0.006637 0.009063 0.01259 0.37% Castro::construct_old_gravity_source() 10 0.007113 0.01029 0.0121 0.35% Amr::writePlotFile() 2 0.008567 0.01055 0.01117 0.33% FabArray::setDomainBndry() 41 0.007034 0.009224 0.01093 0.32% Castro::initMFs() 1 0.005408 0.006407 0.00832 0.24% Castro::construct_new_source() 50 0.005842 0.006313 0.006592 0.19% StateData::define() 4 0.0044 0.005129 0.00649 0.19% Castro::enforce_min_density() 62 0.005848 0.006101 0.006334 0.18% main() 1 0.003764 0.003886 0.004034 0.12% Castro::swap_state_time_levels() 10 0.002807 0.003582 0.003824 0.11% Amr::coarseTimeStep() 10 0.000447 0.0009334 0.002731 0.08% Castro::buildMetrics() 1 0.001255 0.001483 0.001896 0.06% Castro::finalize_do_advance() 10 0.0004455 0.0009091 0.001204 0.04% Amr::InitAmr() 1 0.000272 0.0003396 0.000587 0.02% Amr::timeStep() 10 0.0001675 0.0002302 0.0005348 0.02% DistributionMapping::LeastUsedCPUs() 1 1.115e-05 0.0002865 0.0003601 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002786 0.0002971 0.0003461 0.01% Castro::clean_state() 62 0.0001426 0.0001548 0.000164 0.00% StateDataPhysBCFunct::() 41 0.0001135 0.0001327 0.0001585 0.00% Castro::enforce_consistent_e() 1 7.826e-05 9.935e-05 0.0001405 0.00% Amr::FinalizeInit() 1 4.469e-06 1.5e-05 8.194e-05 0.00% FillPatchSingleLevel 41 5.994e-05 6.664e-05 7.731e-05 0.00% Castro::construct_old_source() 50 4.75e-05 6.556e-05 7.505e-05 0.00% Castro::subcycle_advance_ctu() 10 3.428e-05 5.487e-05 7.306e-05 0.00% Castro::do_new_sources() 10 5.006e-05 6.192e-05 7.156e-05 0.00% Castro::Castro() 1 5.046e-05 5.768e-05 6.807e-05 0.00% FabArray::ParallelCopy() 41 5.185e-05 5.979e-05 6.494e-05 0.00% Amr::writeSmallPlotFile() 1 3.511e-05 5.141e-05 6.293e-05 0.00% Castro::do_old_sources() 10 4.646e-05 5.464e-05 6.129e-05 0.00% FabArrayBase::getCPC() 41 3.87e-05 4.682e-05 6.127e-05 0.00% Castro::construct_new_gravity() 10 3.693e-05 4.531e-05 5.889e-05 0.00% Castro::finalize_advance() 10 4.936e-05 5.217e-05 5.588e-05 0.00% Castro::advance() 10 3.331e-05 4.039e-05 5.404e-05 0.00% Castro::construct_old_gravity() 10 3.812e-05 4.391e-05 5.093e-05 0.00% Castro::apply_source_to_state() 20 3.422e-05 4.039e-05 4.789e-05 0.00% Castro::enforce_speed_limit() 62 2.542e-05 2.928e-05 3.317e-05 0.00% Amr::defBaseLevel() 1 2.272e-05 2.776e-05 3.315e-05 0.00% FabArrayBase::CPC::define() 2 2.32e-05 2.62e-05 3.116e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.686e-05 1.919e-05 2.57e-05 0.00% Castro::check_for_nan() 20 1.922e-05 2.115e-05 2.3e-05 0.00% Amr::initSubcycle() 1 8.074e-06 1.032e-05 1.481e-05 0.00% Gravity::swapTimeLevels() 10 9.487e-06 1.204e-05 1.457e-05 0.00% Castro::post_init() 1 8.73e-06 1.139e-05 1.366e-05 0.00% Amr::InitializeInit() 1 1.798e-06 3.756e-06 1.337e-05 0.00% Castro::computeNewDt() 9 7.974e-06 9.327e-06 1.337e-05 0.00% Gravity::set_mass_offset() 10 8.318e-06 9.939e-06 1.121e-05 0.00% Castro::create_source_corrector() 10 7.77e-06 9.677e-06 1.112e-05 0.00% Castro::post_timestep() 10 8.601e-06 9.862e-06 1.068e-05 0.00% Castro::FluxRegCrseInit 10 7.477e-06 9.315e-06 1.003e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.855e-06 5.049e-06 7e-06 0.00% Castro::retry_advance_ctu() 10 4.759e-06 5.918e-06 6.654e-06 0.00% Castro::post_regrid() 1 2.138e-06 3.386e-06 5.384e-06 0.00% Castro::computeInitialDt() 2 3.924e-06 4.508e-06 5.16e-06 0.00% Castro::FluxRegFineAdd() 10 2.159e-06 2.517e-06 3.126e-06 0.00% Amr::init() 1 2.111e-06 2.258e-06 2.463e-06 0.00% Amr::initialInit() 1 1.486e-06 1.834e-06 2.282e-06 0.00% DistributionMapping::Distribute() 1 9.05e-07 1.132e-06 1.526e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.434 3.434 3.434 100.00% Amr::coarseTimeStep() 10 3.195 3.195 3.195 93.04% Amr::timeStep() 10 3.184 3.185 3.185 92.75% Castro::advance() 10 3.168 3.169 3.169 92.27% Castro::subcycle_advance_ctu() 10 3.092 3.095 3.104 90.38% Castro::do_advance_ctu() 10 3.092 3.095 3.104 90.37% Castro::construct_ctu_hydro_source() 10 2.205 2.241 2.265 65.95% Gravity::make_radial_gravity() 21 0.3489 0.3671 0.3758 10.94% Gravity::get_new_grav_vector() 11 0.2326 0.2348 0.2367 6.89% Castro::construct_old_gravity() 10 0.2044 0.2177 0.2268 6.60% Gravity::get_old_grav_vector() 10 0.2034 0.2169 0.2261 6.58% Amr::init() 1 0.2248 0.2251 0.2252 6.56% Amr::initialInit() 1 0.2114 0.2118 0.212 6.17% Castro::construct_new_gravity() 10 0.2043 0.2058 0.2069 6.02% FillPatchIterator::Initialize 41 0.1474 0.1646 0.1875 5.46% Amr::InitializeInit() 1 0.05538 0.1069 0.1787 5.20% Amr::defBaseLevel() 1 0.05538 0.1069 0.1787 5.20% Castro::initData() 1 0.04167 0.09147 0.16 4.66% Castro::initialize_do_advance() 10 0.1448 0.1521 0.1598 4.65% Castro::estTimeStep() 21 0.02927 0.1019 0.1589 4.63% FillPatchSingleLevel 41 0.1145 0.1266 0.1566 4.56% Amr::FinalizeInit() 1 0.03307 0.1049 0.1563 4.55% Castro::clean_state() 62 0.1113 0.1165 0.126 3.67% Castro::computeInitialDt() 2 0.002055 0.07404 0.1256 3.66% FabArray::ParallelCopy() 41 0.07301 0.08514 0.1136 3.31% Castro::expand_state() 10 0.0984 0.1052 0.1129 3.29% FabArray::ParallelCopy_finish() 41 0.03325 0.04593 0.07879 2.29% FabArray::setVal() 143 0.06168 0.07018 0.07764 2.26% Castro::initialize_advance() 10 0.06419 0.07316 0.07615 2.22% Castro::computeTemp() 63 0.06386 0.06827 0.07465 2.17% Castro::do_new_sources() 10 0.05787 0.06211 0.0694 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04672 0.04997 0.05566 1.62% Castro::reset_internal_energy(Fab) 1008 0.04645 0.04967 0.05535 1.61% Castro::do_old_sources() 10 0.03898 0.04637 0.0536 1.56% Castro::normalize_species() 62 0.04154 0.04303 0.04602 1.34% StateDataPhysBCFunct::() 41 0.03839 0.04137 0.04299 1.25% StateData::FillBoundary(geom) 41 0.03827 0.04123 0.04284 1.25% FabArray::ParallelCopy_nowait() 41 0.03475 0.03915 0.04047 1.18% Castro::construct_new_source() 50 0.02811 0.02962 0.03373 0.98% Castro::post_init() 1 0.0287 0.0299 0.0304 0.89% Gravity::interpolate_monopole_grav() 21 0.02738 0.02788 0.02832 0.82% Castro::construct_new_gravity_source() 10 0.02196 0.0233 0.02727 0.79% Amr::writePlotFile() 2 0.0225 0.02268 0.02282 0.66% Castro::post_timestep() 10 0.01533 0.0158 0.01679 0.49% Castro::apply_source_to_state() 20 0.01209 0.01425 0.01626 0.47% MultiFab::Saxpy() 20 0.01205 0.01421 0.01622 0.47% Castro::check_for_nan() 20 0.01048 0.01162 0.01488 0.43% MultiFab::contains_nan() 20 0.01046 0.0116 0.01486 0.43% VisMF::Write(FabArray) 2 0.01161 0.01212 0.01422 0.41% Castro::construct_old_source() 50 0.007161 0.01036 0.01216 0.35% Castro::construct_old_gravity_source() 10 0.007113 0.01029 0.0121 0.35% Castro::Castro() 1 0.008575 0.00993 0.01206 0.35% FabArray::setDomainBndry() 41 0.007034 0.009224 0.01093 0.32% Castro::computeNewDt() 9 0.006843 0.008969 0.009858 0.29% Castro::initMFs() 1 0.005408 0.006407 0.00832 0.24% AmrLevel::AmrLevel(dm) 1 0.004418 0.005148 0.006515 0.19% StateData::define() 4 0.0044 0.005129 0.00649 0.19% Castro::enforce_min_density() 62 0.005848 0.006101 0.006334 0.18% Castro::swap_state_time_levels() 10 0.002807 0.003582 0.003824 0.11% Castro::post_regrid() 1 0.001538 0.001913 0.002935 0.09% Castro::buildMetrics() 1 0.001373 0.001632 0.002118 0.06% Castro::finalize_do_advance() 10 0.0004455 0.0009091 0.001204 0.04% Amr::InitAmr() 1 0.000281 0.0003499 0.0006018 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.67e-05 0.0002927 0.0003683 0.01% DistributionMapping::LeastUsedCPUs() 1 1.115e-05 0.0002865 0.0003601 0.01% Castro::enforce_consistent_e() 1 7.826e-05 9.935e-05 0.0001405 0.00% FabArrayBase::getCPC() 41 6.453e-05 7.302e-05 8.99e-05 0.00% Castro::finalize_advance() 10 6.159e-05 6.4e-05 6.591e-05 0.00% Amr::writeSmallPlotFile() 1 3.511e-05 5.141e-05 6.293e-05 0.00% Castro::enforce_speed_limit() 62 2.542e-05 2.928e-05 3.317e-05 0.00% FabArrayBase::CPC::define() 2 2.32e-05 2.62e-05 3.116e-05 0.00% Amr::initSubcycle() 1 8.074e-06 1.032e-05 1.481e-05 0.00% Gravity::swapTimeLevels() 10 9.487e-06 1.204e-05 1.457e-05 0.00% Gravity::set_mass_offset() 10 8.318e-06 9.939e-06 1.121e-05 0.00% Castro::create_source_corrector() 10 7.77e-06 9.677e-06 1.112e-05 0.00% Castro::FluxRegCrseInit 10 7.477e-06 9.315e-06 1.003e-05 0.00% Castro::retry_advance_ctu() 10 4.759e-06 5.918e-06 6.654e-06 0.00% Castro::FluxRegFineAdd() 10 2.159e-06 2.517e-06 3.126e-06 0.00% DistributionMapping::Distribute() 1 9.05e-07 1.132e-06 1.526e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.04-39-g50466d11e7b2) finalized