MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-3-gdf9b6944a6d5) initialized Starting run at 13:00:59 UTC on 2022-05-03. Successfully read inputs file ... Castro git describe: 22.05-5-gdd79b4ecf AMReX git describe: 22.05-3-gdf9b6944a Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012995832 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.350553447 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.334580956 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338460075 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.32649927 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.328618944 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.346355875 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308018585 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.302889384 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.304465123 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.30457342 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009341671 seconds Ending run at 13:01:02 UTC on 2022-05-03. Run time = 3.45564512 Run time without initialization = 3.257958461 Average number of zones advanced per microsecond: 0.805 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.455 ... 3.455 ... 3.456 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2333 2.2655 2.3108 66.87% Gravity::make_radial_gravity() 21 0.3453 0.3548 0.3622 10.48% Castro::initData() 1 0.03968 0.08815 0.1349 3.90% Castro::do_advance_ctu() 10 0.05353 0.1004 0.1314 3.80% Castro::estTimeStep() 21 0.01754 0.06893 0.1206 3.49% FabArray::setVal() 143 0.06988 0.07425 0.08063 2.33% FabArray::ParallelCopy_finish() 41 0.03514 0.04827 0.06349 1.84% Castro::reset_internal_energy(Fab) 1008 0.04808 0.05009 0.05149 1.49% StateData::FillBoundary(geom) 41 0.03864 0.04152 0.04453 1.29% Castro::normalize_species() 62 0.0412 0.04279 0.04427 1.28% FabArray::ParallelCopy_nowait() 41 0.03899 0.04135 0.04373 1.27% FillPatchIterator::Initialize 41 0.02377 0.03136 0.03423 0.99% Gravity::interpolate_monopole_grav() 21 0.02773 0.02856 0.0306 0.89% Castro::construct_new_gravity_source() 10 0.02263 0.02389 0.02521 0.73% Castro::expand_state() 10 0.01367 0.01916 0.02109 0.61% Castro::computeTemp() 63 0.01814 0.01868 0.01938 0.56% Castro::initialize_do_advance() 10 0.01146 0.01639 0.01861 0.54% MultiFab::Saxpy() 20 0.01511 0.01608 0.0177 0.51% Castro::initialize_advance() 10 0.01071 0.01248 0.01474 0.43% VisMF::Write(FabArray) 2 0.01119 0.01186 0.01418 0.41% Gravity::get_new_grav_vector() 11 0.01046 0.01144 0.01294 0.37% Castro::construct_old_gravity_source() 10 0.009025 0.01134 0.01261 0.36% MultiFab::contains_nan() 20 0.01053 0.01146 0.01248 0.36% FabArray::setDomainBndry() 41 0.007468 0.01017 0.01156 0.33% Amr::writePlotFile() 2 0.008368 0.01081 0.01155 0.33% Gravity::get_old_grav_vector() 10 0.008836 0.009592 0.01098 0.32% Castro::construct_new_source() 50 0.006503 0.006684 0.006856 0.20% Castro::enforce_min_density() 62 0.006021 0.006247 0.006521 0.19% Castro::initMFs() 1 0.005195 0.005708 0.006012 0.17% StateData::define() 4 0.004285 0.004618 0.004824 0.14% Castro::swap_state_time_levels() 10 0.002949 0.003797 0.004219 0.12% main() 1 0.00316 0.003616 0.00389 0.11% Castro::buildMetrics() 1 0.001245 0.001327 0.001381 0.04% Castro::finalize_do_advance() 10 0.0009517 0.001172 0.001269 0.04% Amr::coarseTimeStep() 10 0.000401 0.0006185 0.001037 0.03% Amr::timeStep() 10 0.0001621 0.0002308 0.0004786 0.01% Amr::InitAmr() 1 0.0002546 0.0002933 0.0003695 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002862 0.0002977 0.0003084 0.01% Castro::clean_state() 62 0.0001414 0.0001547 0.0001638 0.00% StateDataPhysBCFunct::() 41 0.0001155 0.0001289 0.0001522 0.00% DistributionMapping::LeastUsedCPUs() 1 6.087e-06 7.624e-05 0.0001292 0.00% Castro::Castro() 1 5.278e-05 6.674e-05 9.734e-05 0.00% Castro::enforce_consistent_e() 1 8.492e-05 8.85e-05 9.285e-05 0.00% Castro::construct_old_source() 50 6.41e-05 8.011e-05 9.089e-05 0.00% Amr::FinalizeInit() 1 3.683e-06 1.491e-05 8.974e-05 0.00% FillPatchSingleLevel 41 6.364e-05 7.218e-05 8.545e-05 0.00% Castro::do_old_sources() 10 5.715e-05 6.728e-05 8.179e-05 0.00% Castro::do_new_sources() 10 5.484e-05 6.592e-05 7.283e-05 0.00% FabArray::ParallelCopy() 41 5.754e-05 6.465e-05 7.239e-05 0.00% Castro::subcycle_advance_ctu() 10 4.131e-05 5.606e-05 7.234e-05 0.00% Amr::writeSmallPlotFile() 1 2.463e-05 5.101e-05 6.929e-05 0.00% FabArrayBase::getCPC() 41 4.717e-05 5.516e-05 6.318e-05 0.00% Castro::construct_old_gravity() 10 4.848e-05 5.305e-05 5.67e-05 0.00% Castro::advance() 10 3.897e-05 4.422e-05 5.625e-05 0.00% Castro::construct_new_gravity() 10 3.995e-05 4.769e-05 5.613e-05 0.00% Castro::finalize_advance() 10 4.728e-05 5.116e-05 5.499e-05 0.00% Castro::apply_source_to_state() 20 3.962e-05 4.798e-05 5.376e-05 0.00% FabArrayBase::CPC::define() 2 2.277e-05 2.931e-05 3.716e-05 0.00% Amr::defBaseLevel() 1 2.233e-05 2.665e-05 3.265e-05 0.00% Castro::enforce_speed_limit() 62 2.651e-05 2.832e-05 3.053e-05 0.00% Castro::check_for_nan() 20 1.975e-05 2.283e-05 2.652e-05 0.00% Gravity::swapTimeLevels() 10 1.259e-05 1.47e-05 1.785e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.164e-05 1.344e-05 1.582e-05 0.00% Castro::post_init() 1 8.219e-06 1.001e-05 1.457e-05 0.00% Castro::create_source_corrector() 10 8.493e-06 1.035e-05 1.235e-05 0.00% Castro::post_timestep() 10 7.948e-06 9.832e-06 1.197e-05 0.00% Castro::FluxRegCrseInit 10 7.938e-06 8.933e-06 1.072e-05 0.00% Castro::computeNewDt() 9 7.153e-06 8.835e-06 1.044e-05 0.00% Gravity::set_mass_offset() 10 7.941e-06 9.353e-06 9.904e-06 0.00% Amr::initSubcycle() 1 8.165e-06 8.992e-06 9.544e-06 0.00% Amr::InitializeInit() 1 2.211e-06 2.888e-06 6.911e-06 0.00% Castro::retry_advance_ctu() 10 4.808e-06 5.396e-06 6.124e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.925e-06 4.272e-06 4.847e-06 0.00% Castro::computeInitialDt() 2 3.011e-06 3.833e-06 4.529e-06 0.00% Castro::post_regrid() 1 1.981e-06 2.916e-06 4.011e-06 0.00% Castro::FluxRegFineAdd() 10 2.274e-06 2.552e-06 3.41e-06 0.00% Amr::init() 1 1.617e-06 2.092e-06 2.576e-06 0.00% Amr::initialInit() 1 1.163e-06 1.473e-06 2.474e-06 0.00% DistributionMapping::Distribute() 1 1.007e-06 1.172e-06 1.294e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.455 3.455 3.456 100.00% Amr::coarseTimeStep() 10 3.245 3.245 3.245 93.90% Amr::timeStep() 10 3.236 3.236 3.236 93.64% Castro::advance() 10 3.22 3.22 3.22 93.18% Castro::subcycle_advance_ctu() 10 3.141 3.144 3.147 91.06% Castro::do_advance_ctu() 10 3.141 3.144 3.147 91.06% Castro::construct_ctu_hydro_source() 10 2.233 2.265 2.311 66.87% Gravity::make_radial_gravity() 21 0.3453 0.3548 0.3622 10.48% Gravity::get_new_grav_vector() 11 0.2275 0.2294 0.2307 6.68% Castro::construct_old_gravity() 10 0.2084 0.2153 0.2216 6.41% Gravity::get_old_grav_vector() 10 0.2076 0.2145 0.2209 6.39% Castro::construct_new_gravity() 10 0.202 0.2031 0.2039 5.90% Amr::init() 1 0.1971 0.1972 0.1973 5.71% Amr::initialInit() 1 0.1836 0.184 0.1842 5.33% FillPatchIterator::Initialize 41 0.1629 0.173 0.1801 5.21% Castro::initialize_do_advance() 10 0.1507 0.1579 0.162 4.69% Amr::InitializeInit() 1 0.05694 0.1066 0.1542 4.46% Amr::defBaseLevel() 1 0.05693 0.1066 0.1542 4.46% FillPatchSingleLevel 41 0.1225 0.1315 0.1439 4.16% Castro::initData() 1 0.0439 0.09237 0.1392 4.03% Amr::FinalizeInit() 1 0.02993 0.07733 0.1271 3.68% Castro::clean_state() 62 0.1133 0.1173 0.1207 3.49% Castro::estTimeStep() 21 0.01754 0.06893 0.1206 3.49% Castro::expand_state() 10 0.105 0.1107 0.1138 3.29% FabArray::ParallelCopy() 41 0.07901 0.08977 0.1031 2.98% Castro::computeInitialDt() 2 0.001749 0.04934 0.09897 2.86% FabArray::setVal() 143 0.06988 0.07425 0.08063 2.33% Castro::initialize_advance() 10 0.07309 0.07593 0.07878 2.28% Castro::computeTemp() 63 0.06672 0.06907 0.07118 2.06% Castro::do_new_sources() 10 0.06152 0.06461 0.06793 1.97% FabArray::ParallelCopy_finish() 41 0.03514 0.04827 0.06349 1.84% Castro::do_old_sources() 10 0.04645 0.0503 0.05504 1.59% Castro::reset_internal_energy(MultiFab) 63 0.04838 0.05039 0.05179 1.50% Castro::reset_internal_energy(Fab) 1008 0.04808 0.05009 0.05149 1.49% StateDataPhysBCFunct::() 41 0.03877 0.04164 0.04469 1.29% StateData::FillBoundary(geom) 41 0.03864 0.04152 0.04453 1.29% Castro::normalize_species() 62 0.0412 0.04279 0.04427 1.28% FabArray::ParallelCopy_nowait() 41 0.03908 0.04144 0.04381 1.27% Castro::construct_new_source() 50 0.02922 0.03057 0.03207 0.93% Gravity::interpolate_monopole_grav() 21 0.02773 0.02856 0.0306 0.89% Castro::post_init() 1 0.02695 0.02726 0.02742 0.79% Castro::construct_new_gravity_source() 10 0.02263 0.02389 0.02521 0.73% Amr::writePlotFile() 2 0.02247 0.02267 0.023 0.67% Castro::apply_source_to_state() 20 0.01516 0.01613 0.01775 0.51% MultiFab::Saxpy() 20 0.01511 0.01608 0.0177 0.51% Castro::post_timestep() 10 0.01566 0.01585 0.01605 0.46% VisMF::Write(FabArray) 2 0.01119 0.01186 0.01418 0.41% Castro::construct_old_source() 50 0.009089 0.01142 0.0127 0.37% Castro::construct_old_gravity_source() 10 0.009025 0.01134 0.01261 0.36% Castro::check_for_nan() 20 0.01055 0.01148 0.0125 0.36% MultiFab::contains_nan() 20 0.01053 0.01146 0.01248 0.36% FabArray::setDomainBndry() 41 0.007468 0.01017 0.01156 0.33% Castro::Castro() 1 0.00844 0.00953 0.01012 0.29% Castro::computeNewDt() 9 0.006784 0.007303 0.007566 0.22% Castro::enforce_min_density() 62 0.006021 0.006247 0.006521 0.19% Castro::initMFs() 1 0.005195 0.005708 0.006012 0.17% AmrLevel::AmrLevel(dm) 1 0.004297 0.004632 0.004838 0.14% StateData::define() 4 0.004285 0.004618 0.004824 0.14% Castro::swap_state_time_levels() 10 0.002949 0.003797 0.004219 0.12% Castro::post_regrid() 1 0.001554 0.00163 0.001856 0.05% Castro::buildMetrics() 1 0.001357 0.001472 0.001544 0.04% Castro::finalize_do_advance() 10 0.0009517 0.001172 0.001269 0.04% Amr::InitAmr() 1 0.0002634 0.0003023 0.0003777 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.142e-05 8.169e-05 0.0001352 0.00% DistributionMapping::LeastUsedCPUs() 1 6.087e-06 7.624e-05 0.0001292 0.00% FabArrayBase::getCPC() 41 7.322e-05 8.447e-05 0.0001003 0.00% Castro::enforce_consistent_e() 1 8.492e-05 8.85e-05 9.285e-05 0.00% Amr::writeSmallPlotFile() 1 2.463e-05 5.101e-05 6.929e-05 0.00% Castro::finalize_advance() 10 5.76e-05 6.264e-05 6.71e-05 0.00% FabArrayBase::CPC::define() 2 2.277e-05 2.931e-05 3.716e-05 0.00% Castro::enforce_speed_limit() 62 2.651e-05 2.832e-05 3.053e-05 0.00% Gravity::swapTimeLevels() 10 1.259e-05 1.47e-05 1.785e-05 0.00% Castro::create_source_corrector() 10 8.493e-06 1.035e-05 1.235e-05 0.00% Castro::FluxRegCrseInit 10 7.938e-06 8.933e-06 1.072e-05 0.00% Gravity::set_mass_offset() 10 7.941e-06 9.353e-06 9.904e-06 0.00% Amr::initSubcycle() 1 8.165e-06 8.992e-06 9.544e-06 0.00% Castro::retry_advance_ctu() 10 4.808e-06 5.396e-06 6.124e-06 0.00% Castro::FluxRegFineAdd() 10 2.274e-06 2.552e-06 3.41e-06 0.00% DistributionMapping::Distribute() 1 1.007e-06 1.172e-06 1.294e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-3-gdf9b6944a6d5) finalized