MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-3-gdf9b6944a6d5) initialized Starting run at 15:10:33 UTC on 2022-05-03. Successfully read inputs file ... Castro git describe: 22.05-3-g369e61838 AMReX git describe: 22.05-3-gdf9b6944a Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01498763 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358332607 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336420984 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.316404254 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.316374044 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.316177208 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341031353 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.30438908 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.298941461 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.298837437 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.297755606 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009294147 seconds Ending run at 15:10:36 UTC on 2022-05-03. Run time = 3.40124139 Run time without initialization = 3.198011592 Average number of zones advanced per microsecond: 0.820 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.401 ... 3.401 ... 3.401 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1741 2.2465 2.2691 66.71% Gravity::make_radial_gravity() 21 0.3316 0.3412 0.3574 10.51% Castro::do_advance_ctu() 10 0.07147 0.09488 0.1694 4.98% Castro::initData() 1 0.0372 0.0796 0.1376 4.05% Castro::estTimeStep() 21 0.01786 0.08238 0.1284 3.78% FabArray::setVal() 143 0.06753 0.07302 0.07805 2.29% FabArray::ParallelCopy_finish() 41 0.03111 0.03864 0.06091 1.79% Castro::reset_internal_energy(Fab) 1008 0.04844 0.04937 0.05169 1.52% Castro::normalize_species() 62 0.04085 0.04167 0.04363 1.28% StateData::FillBoundary(geom) 41 0.03694 0.04044 0.04316 1.27% FabArray::ParallelCopy_nowait() 41 0.03384 0.03977 0.04208 1.24% FillPatchIterator::Initialize 41 0.02375 0.02943 0.03266 0.96% Gravity::interpolate_monopole_grav() 21 0.02727 0.02774 0.02805 0.82% Castro::construct_new_gravity_source() 10 0.02178 0.02386 0.02645 0.78% Castro::expand_state() 10 0.01204 0.01779 0.021 0.62% Castro::computeTemp() 63 0.01761 0.01828 0.01917 0.56% Castro::initialize_do_advance() 10 0.01072 0.01612 0.01765 0.52% MultiFab::Saxpy() 20 0.01346 0.01515 0.01603 0.47% VisMF::Write(FabArray) 2 0.01236 0.013 0.01565 0.46% Castro::initialize_advance() 10 0.01073 0.01273 0.01474 0.43% Gravity::get_new_grav_vector() 11 0.01007 0.01099 0.01327 0.39% Amr::writePlotFile() 2 0.00889 0.01161 0.01235 0.36% MultiFab::contains_nan() 20 0.01023 0.0111 0.0119 0.35% Castro::construct_old_gravity_source() 10 0.007272 0.01089 0.01163 0.34% FabArray::setDomainBndry() 41 0.006851 0.009555 0.01098 0.32% Gravity::get_old_grav_vector() 10 0.006643 0.008684 0.01001 0.29% Castro::enforce_min_density() 62 0.006644 0.006879 0.007227 0.21% Castro::construct_new_source() 50 0.005905 0.006472 0.006893 0.20% Castro::initMFs() 1 0.005414 0.005803 0.006435 0.19% StateData::define() 4 0.004462 0.004642 0.004922 0.14% Castro::swap_state_time_levels() 10 0.002477 0.003802 0.004031 0.12% main() 1 0.003611 0.003789 0.004006 0.12% Amr::coarseTimeStep() 10 0.0004272 0.0006602 0.001535 0.05% Castro::buildMetrics() 1 0.001254 0.001315 0.001424 0.04% Castro::finalize_do_advance() 10 0.000472 0.001015 0.001198 0.04% Amr::timeStep() 10 0.0001779 0.00022 0.0004057 0.01% Amr::InitAmr() 1 0.0002721 0.0002944 0.0003831 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002726 0.0002887 0.0003249 0.01% StateDataPhysBCFunct::() 41 0.0001044 0.0001353 0.0001717 0.01% Castro::clean_state() 62 0.0001374 0.000154 0.000171 0.01% DistributionMapping::LeastUsedCPUs() 1 7.96e-06 0.0001076 0.0001316 0.00% Castro::enforce_consistent_e() 1 7.933e-05 9.029e-05 0.0001007 0.00% Castro::Castro() 1 5.072e-05 6.97e-05 8.974e-05 0.00% Castro::construct_old_source() 50 5.431e-05 6.712e-05 8.402e-05 0.00% Amr::FinalizeInit() 1 3.895e-06 1.454e-05 8.271e-05 0.00% Castro::subcycle_advance_ctu() 10 3.806e-05 5.443e-05 8.092e-05 0.00% FabArray::ParallelCopy() 41 4.918e-05 5.916e-05 7.77e-05 0.00% FillPatchSingleLevel 41 5.446e-05 6.146e-05 7.303e-05 0.00% Castro::do_new_sources() 10 4.887e-05 5.997e-05 7.062e-05 0.00% Amr::writeSmallPlotFile() 1 2.565e-05 4.821e-05 6.875e-05 0.00% Castro::do_old_sources() 10 4.821e-05 5.72e-05 6.506e-05 0.00% Castro::advance() 10 3.528e-05 4.391e-05 6.395e-05 0.00% FabArrayBase::getCPC() 41 4.045e-05 4.808e-05 6.14e-05 0.00% Castro::finalize_advance() 10 4.747e-05 5.073e-05 5.78e-05 0.00% Castro::construct_old_gravity() 10 3.945e-05 4.662e-05 5.565e-05 0.00% Castro::apply_source_to_state() 20 3.514e-05 4.337e-05 5.204e-05 0.00% Castro::construct_new_gravity() 10 3.637e-05 4.218e-05 4.888e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.907e-05 2.601e-05 3.746e-05 0.00% Amr::defBaseLevel() 1 2.262e-05 2.819e-05 3.505e-05 0.00% FabArrayBase::CPC::define() 2 2.31e-05 2.589e-05 2.924e-05 0.00% Castro::enforce_speed_limit() 62 2.339e-05 2.642e-05 2.858e-05 0.00% Castro::computeNewDt() 9 7.387e-06 1.087e-05 2.449e-05 0.00% Castro::check_for_nan() 20 1.948e-05 2.125e-05 2.396e-05 0.00% Castro::post_init() 1 8.046e-06 1.087e-05 1.613e-05 0.00% Gravity::swapTimeLevels() 10 1.092e-05 1.308e-05 1.527e-05 0.00% Castro::post_timestep() 10 7.657e-06 9.997e-06 1.205e-05 0.00% Castro::FluxRegCrseInit 10 7.231e-06 9.011e-06 1.163e-05 0.00% Castro::create_source_corrector() 10 8.31e-06 1.009e-05 1.163e-05 0.00% Gravity::set_mass_offset() 10 8.758e-06 9.756e-06 1.125e-05 0.00% Amr::initSubcycle() 1 7.941e-06 8.926e-06 9.755e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.799e-06 4.557e-06 6.436e-06 0.00% Castro::retry_advance_ctu() 10 4.829e-06 5.486e-06 6.261e-06 0.00% Amr::InitializeInit() 1 1.906e-06 2.885e-06 6.255e-06 0.00% Castro::computeInitialDt() 2 3.502e-06 4.518e-06 5.001e-06 0.00% Castro::post_regrid() 1 2.129e-06 3.702e-06 4.844e-06 0.00% Amr::init() 1 2.242e-06 2.508e-06 2.875e-06 0.00% Castro::FluxRegFineAdd() 10 1.977e-06 2.179e-06 2.401e-06 0.00% Amr::initialInit() 1 1.335e-06 1.575e-06 1.921e-06 0.00% DistributionMapping::Distribute() 1 9.87e-07 1.157e-06 1.315e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.401 3.401 3.401 100.00% Amr::coarseTimeStep() 10 3.185 3.185 3.185 93.63% Amr::timeStep() 10 3.175 3.176 3.176 93.38% Castro::advance() 10 3.159 3.16 3.16 92.90% Castro::subcycle_advance_ctu() 10 3.08 3.082 3.084 90.67% Castro::do_advance_ctu() 10 3.08 3.082 3.084 90.66% Castro::construct_ctu_hydro_source() 10 2.174 2.246 2.269 66.71% Gravity::make_radial_gravity() 21 0.3316 0.3412 0.3574 10.51% Gravity::get_new_grav_vector() 11 0.2198 0.2213 0.2224 6.54% Castro::construct_old_gravity() 10 0.1963 0.2035 0.2166 6.37% Gravity::get_old_grav_vector() 10 0.1956 0.2027 0.216 6.35% Amr::init() 1 0.2027 0.2028 0.2028 5.96% Castro::construct_new_gravity() 10 0.1941 0.1948 0.1961 5.77% Amr::initialInit() 1 0.1874 0.1875 0.1877 5.52% FillPatchIterator::Initialize 41 0.1504 0.1582 0.1627 4.78% Amr::InitializeInit() 1 0.05537 0.09829 0.1575 4.63% Amr::defBaseLevel() 1 0.05536 0.09828 0.1575 4.63% Castro::initialize_do_advance() 10 0.1378 0.1502 0.1571 4.62% Castro::initData() 1 0.04143 0.08373 0.1419 4.17% Amr::FinalizeInit() 1 0.02998 0.08925 0.1322 3.89% FillPatchSingleLevel 41 0.1124 0.1192 0.1321 3.88% Castro::estTimeStep() 21 0.01786 0.08238 0.1284 3.78% Castro::clean_state() 62 0.1139 0.1157 0.119 3.50% Castro::expand_state() 10 0.09607 0.1038 0.1094 3.22% Castro::computeInitialDt() 2 0.001843 0.06102 0.104 3.06% FabArray::ParallelCopy() 41 0.07171 0.07854 0.09489 2.79% Castro::initialize_advance() 10 0.07575 0.07721 0.07901 2.32% FabArray::setVal() 143 0.06753 0.07302 0.07805 2.29% Castro::computeTemp() 63 0.06633 0.06795 0.07115 2.09% Castro::do_new_sources() 10 0.05975 0.06318 0.06828 2.01% FabArray::ParallelCopy_finish() 41 0.03111 0.03864 0.06091 1.79% Castro::reset_internal_energy(MultiFab) 63 0.04872 0.04966 0.05198 1.53% Castro::reset_internal_energy(Fab) 1008 0.04844 0.04937 0.05169 1.52% Castro::do_old_sources() 10 0.04171 0.04703 0.04855 1.43% Castro::normalize_species() 62 0.04085 0.04167 0.04363 1.28% StateDataPhysBCFunct::() 41 0.03711 0.04058 0.04328 1.27% StateData::FillBoundary(geom) 41 0.03694 0.04044 0.04316 1.27% FabArray::ParallelCopy_nowait() 41 0.03393 0.03984 0.04214 1.24% Castro::construct_new_source() 50 0.02769 0.03033 0.03334 0.98% Gravity::interpolate_monopole_grav() 21 0.02727 0.02774 0.02805 0.82% Castro::post_init() 1 0.02709 0.02747 0.0277 0.81% Castro::construct_new_gravity_source() 10 0.02178 0.02386 0.02645 0.78% Amr::writePlotFile() 2 0.02447 0.02461 0.02477 0.73% Castro::post_timestep() 10 0.01536 0.01575 0.01641 0.48% Castro::apply_source_to_state() 20 0.01349 0.01519 0.01608 0.47% MultiFab::Saxpy() 20 0.01346 0.01515 0.01603 0.47% VisMF::Write(FabArray) 2 0.01236 0.013 0.01565 0.46% Castro::check_for_nan() 20 0.01025 0.01112 0.01193 0.35% MultiFab::contains_nan() 20 0.01023 0.0111 0.0119 0.35% Castro::construct_old_source() 50 0.007326 0.01095 0.01168 0.34% Castro::construct_old_gravity_source() 10 0.007272 0.01089 0.01163 0.34% FabArray::setDomainBndry() 41 0.006851 0.009555 0.01098 0.32% Castro::Castro() 1 0.009253 0.009741 0.0105 0.31% Castro::computeNewDt() 9 0.006958 0.007684 0.008109 0.24% Castro::enforce_min_density() 62 0.006644 0.006879 0.007227 0.21% Castro::initMFs() 1 0.005414 0.005803 0.006435 0.19% AmrLevel::AmrLevel(dm) 1 0.004483 0.004669 0.00496 0.15% StateData::define() 4 0.004462 0.004642 0.004922 0.14% Castro::swap_state_time_levels() 10 0.002477 0.003802 0.004031 0.12% Castro::post_regrid() 1 0.001564 0.001644 0.001948 0.06% Castro::buildMetrics() 1 0.001377 0.001449 0.001578 0.05% Castro::finalize_do_advance() 10 0.000472 0.001015 0.001198 0.04% Amr::InitAmr() 1 0.0002801 0.0003033 0.0003915 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.275e-05 0.0001133 0.0001393 0.00% DistributionMapping::LeastUsedCPUs() 1 7.96e-06 0.0001076 0.0001316 0.00% Castro::enforce_consistent_e() 1 7.933e-05 9.029e-05 0.0001007 0.00% FabArrayBase::getCPC() 41 6.454e-05 7.397e-05 8.612e-05 0.00% Castro::finalize_advance() 10 5.766e-05 6.192e-05 6.975e-05 0.00% Amr::writeSmallPlotFile() 1 2.565e-05 4.821e-05 6.875e-05 0.00% FabArrayBase::CPC::define() 2 2.31e-05 2.589e-05 2.924e-05 0.00% Castro::enforce_speed_limit() 62 2.339e-05 2.642e-05 2.858e-05 0.00% Gravity::swapTimeLevels() 10 1.092e-05 1.308e-05 1.527e-05 0.00% Castro::FluxRegCrseInit 10 7.231e-06 9.011e-06 1.163e-05 0.00% Castro::create_source_corrector() 10 8.31e-06 1.009e-05 1.163e-05 0.00% Gravity::set_mass_offset() 10 8.758e-06 9.756e-06 1.125e-05 0.00% Amr::initSubcycle() 1 7.941e-06 8.926e-06 9.755e-06 0.00% Castro::retry_advance_ctu() 10 4.829e-06 5.486e-06 6.261e-06 0.00% Castro::FluxRegFineAdd() 10 1.977e-06 2.179e-06 2.401e-06 0.00% DistributionMapping::Distribute() 1 9.87e-07 1.157e-06 1.315e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-3-gdf9b6944a6d5) finalized