MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-3-gdf9b6944a6d5) initialized Starting run at 16:03:50 UTC on 2022-05-03. Successfully read inputs file ... Castro git describe: 22.05-12-gee604e355 AMReX git describe: 22.05-3-gdf9b6944a Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015056126 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.353296958 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335155655 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.321145378 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.320730409 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.323253151 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.351530803 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.30838104 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.304019335 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.302771032 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.302949143 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009891477 seconds Ending run at 16:03:53 UTC on 2022-05-03. Run time = 3.411760525 Run time without initialization = 3.23665691 Average number of zones advanced per microsecond: 0.810 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.411 ... 3.412 ... 3.412 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1799 2.2591 2.3117 67.76% Gravity::make_radial_gravity() 21 0.3349 0.3478 0.3641 10.67% Castro::do_advance_ctu() 10 0.05035 0.1022 0.1824 5.35% Castro::initData() 1 0.03769 0.0759 0.1135 3.33% Castro::estTimeStep() 21 0.02048 0.06195 0.1053 3.09% FabArray::setVal() 143 0.0665 0.07254 0.07836 2.30% FabArray::ParallelCopy_finish() 41 0.03202 0.04216 0.06885 2.02% Castro::reset_internal_energy(Fab) 1008 0.04616 0.04953 0.05116 1.50% StateData::FillBoundary(geom) 41 0.03864 0.04192 0.04577 1.34% Castro::normalize_species() 62 0.04168 0.04228 0.04293 1.26% FabArray::ParallelCopy_nowait() 41 0.03439 0.04053 0.04263 1.25% FillPatchIterator::Initialize 41 0.02402 0.03093 0.03359 0.98% Gravity::interpolate_monopole_grav() 21 0.02771 0.02818 0.02894 0.85% Castro::construct_new_gravity_source() 10 0.02032 0.02366 0.02696 0.79% Castro::expand_state() 10 0.01187 0.01862 0.02119 0.62% Castro::computeTemp() 63 0.01703 0.01854 0.01935 0.57% Castro::initialize_do_advance() 10 0.01106 0.01624 0.01832 0.54% MultiFab::Saxpy() 20 0.01305 0.01458 0.01587 0.47% VisMF::Write(FabArray) 2 0.01245 0.01289 0.01496 0.44% Castro::initialize_advance() 10 0.01067 0.01236 0.01447 0.42% Gravity::get_new_grav_vector() 11 0.009393 0.01098 0.01352 0.40% Amr::writePlotFile() 2 0.0102 0.01207 0.01293 0.38% MultiFab::contains_nan() 20 0.01016 0.0112 0.01234 0.36% Castro::construct_old_gravity_source() 10 0.007261 0.01109 0.01223 0.36% FabArray::setDomainBndry() 41 0.007042 0.01004 0.01152 0.34% Gravity::get_old_grav_vector() 10 0.007135 0.009073 0.01042 0.31% Castro::initMFs() 1 0.005434 0.005651 0.006824 0.20% Castro::construct_new_source() 50 0.005756 0.006239 0.006514 0.19% Castro::enforce_min_density() 62 0.005833 0.006143 0.006447 0.19% StateData::define() 4 0.004426 0.004529 0.004915 0.14% main() 1 0.003655 0.003846 0.004057 0.12% Castro::swap_state_time_levels() 10 0.002795 0.003556 0.003795 0.11% Amr::coarseTimeStep() 10 0.0004044 0.0006929 0.001598 0.05% Castro::buildMetrics() 1 0.001246 0.001289 0.0014 0.04% Castro::finalize_do_advance() 10 0.0004656 0.0008918 0.001025 0.03% Amr::timeStep() 10 0.0001548 0.0002278 0.000523 0.02% Amr::InitAmr() 1 0.0002844 0.0003082 0.0004362 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002711 0.0002911 0.0003121 0.01% Castro::clean_state() 62 0.0001397 0.0001568 0.0001712 0.01% StateDataPhysBCFunct::() 41 0.0001047 0.0001349 0.0001633 0.00% DistributionMapping::LeastUsedCPUs() 1 7.324e-06 0.0001347 0.0001546 0.00% Castro::enforce_consistent_e() 1 7.545e-05 8.666e-05 0.0001028 0.00% Amr::FinalizeInit() 1 4.426e-06 1.606e-05 9.112e-05 0.00% Castro::Castro() 1 4.65e-05 7.159e-05 8.761e-05 0.00% Castro::construct_old_source() 50 4.463e-05 7.251e-05 8.574e-05 0.00% FillPatchSingleLevel 41 5.933e-05 6.733e-05 7.746e-05 0.00% Castro::subcycle_advance_ctu() 10 3.826e-05 5.437e-05 7.523e-05 0.00% FabArray::ParallelCopy() 41 5.001e-05 5.971e-05 6.994e-05 0.00% Amr::writeSmallPlotFile() 1 3.395e-05 4.963e-05 6.801e-05 0.00% Castro::do_old_sources() 10 4.781e-05 5.697e-05 6.61e-05 0.00% Castro::do_new_sources() 10 4.958e-05 5.423e-05 6.049e-05 0.00% Castro::construct_new_gravity() 10 3.689e-05 4.424e-05 5.968e-05 0.00% FabArrayBase::getCPC() 41 4.003e-05 4.981e-05 5.9e-05 0.00% Castro::finalize_advance() 10 5.199e-05 5.537e-05 5.826e-05 0.00% Castro::construct_old_gravity() 10 3.981e-05 4.706e-05 5.354e-05 0.00% Castro::apply_source_to_state() 20 3.47e-05 4.357e-05 5.182e-05 0.00% Amr::defBaseLevel() 1 2.309e-05 3.59e-05 4.358e-05 0.00% Castro::advance() 10 3.355e-05 3.767e-05 4.25e-05 0.00% FabArrayBase::CPC::define() 2 2.355e-05 2.99e-05 3.734e-05 0.00% Castro::check_for_nan() 20 2.083e-05 2.282e-05 3.062e-05 0.00% Castro::enforce_speed_limit() 62 2.456e-05 2.722e-05 3.032e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.206e-05 1.796e-05 2.446e-05 0.00% Gravity::swapTimeLevels() 10 1.055e-05 1.364e-05 1.619e-05 0.00% Castro::FluxRegCrseInit 10 7.66e-06 1.032e-05 1.504e-05 0.00% Castro::computeNewDt() 9 7.988e-06 9.355e-06 1.468e-05 0.00% Castro::post_init() 1 9.083e-06 1.083e-05 1.309e-05 0.00% Gravity::set_mass_offset() 10 8.096e-06 9.795e-06 1.234e-05 0.00% Castro::create_source_corrector() 10 8.817e-06 1.048e-05 1.225e-05 0.00% Castro::retry_advance_ctu() 10 5.44e-06 7.851e-06 1.192e-05 0.00% Castro::post_timestep() 10 8.579e-06 1.009e-05 1.161e-05 0.00% Amr::initSubcycle() 1 8.128e-06 8.654e-06 9.706e-06 0.00% Castro::FluxRegFineAdd() 10 2.002e-06 3.048e-06 7.055e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.812e-06 5.183e-06 7.053e-06 0.00% Amr::InitializeInit() 1 2.056e-06 3.469e-06 6.733e-06 0.00% Castro::computeInitialDt() 2 3.643e-06 4.5e-06 5.199e-06 0.00% Castro::post_regrid() 1 1.659e-06 2.94e-06 4.658e-06 0.00% Amr::init() 1 1.715e-06 2.441e-06 3.076e-06 0.00% Amr::initialInit() 1 1.244e-06 1.688e-06 2.229e-06 0.00% DistributionMapping::Distribute() 1 1.022e-06 1.213e-06 1.417e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.411 3.412 3.412 100.00% Amr::coarseTimeStep() 10 3.223 3.223 3.223 94.46% Amr::timeStep() 10 3.213 3.213 3.214 94.21% Castro::advance() 10 3.197 3.197 3.198 93.72% Castro::subcycle_advance_ctu() 10 3.119 3.121 3.125 91.60% Castro::do_advance_ctu() 10 3.119 3.121 3.125 91.60% Castro::construct_ctu_hydro_source() 10 2.18 2.259 2.312 67.76% Gravity::make_radial_gravity() 21 0.3349 0.3478 0.3641 10.67% Gravity::get_new_grav_vector() 11 0.2251 0.2263 0.2279 6.68% Castro::construct_old_gravity() 10 0.1982 0.2073 0.2214 6.49% Gravity::get_old_grav_vector() 10 0.1973 0.2065 0.2208 6.47% Castro::construct_new_gravity() 10 0.2013 0.2021 0.2028 5.94% FillPatchIterator::Initialize 41 0.1587 0.1659 0.1775 5.20% Amr::init() 1 0.1745 0.1746 0.1747 5.12% Amr::initialInit() 1 0.1592 0.1597 0.1613 4.73% Castro::initialize_do_advance() 10 0.1467 0.1555 0.16 4.69% FillPatchSingleLevel 41 0.119 0.125 0.1462 4.29% Amr::InitializeInit() 1 0.0563 0.09459 0.1322 3.87% Amr::defBaseLevel() 1 0.0563 0.09459 0.1322 3.87% Castro::clean_state() 62 0.1115 0.116 0.1182 3.46% Castro::initData() 1 0.04184 0.08 0.1178 3.45% Castro::expand_state() 10 0.1035 0.1087 0.1113 3.26% Castro::estTimeStep() 21 0.02048 0.06195 0.1053 3.09% Amr::FinalizeInit() 1 0.02734 0.06506 0.105 3.08% FabArray::ParallelCopy() 41 0.0747 0.08282 0.1034 3.03% Castro::initialize_advance() 10 0.07207 0.07599 0.07856 2.30% FabArray::setVal() 143 0.0665 0.07254 0.07836 2.30% Castro::computeInitialDt() 2 0.001762 0.03932 0.07763 2.28% Castro::computeTemp() 63 0.06356 0.06836 0.07071 2.07% FabArray::ParallelCopy_finish() 41 0.03202 0.04216 0.06885 2.02% Castro::do_new_sources() 10 0.05779 0.06229 0.06809 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04645 0.04982 0.05147 1.51% Castro::reset_internal_energy(Fab) 1008 0.04616 0.04953 0.05116 1.50% Castro::do_old_sources() 10 0.04156 0.04686 0.04854 1.42% StateDataPhysBCFunct::() 41 0.03876 0.04206 0.04588 1.34% StateData::FillBoundary(geom) 41 0.03864 0.04192 0.04577 1.34% Castro::normalize_species() 62 0.04168 0.04228 0.04293 1.26% FabArray::ParallelCopy_nowait() 41 0.03448 0.04061 0.0427 1.25% Castro::construct_new_source() 50 0.02607 0.0299 0.03328 0.98% Gravity::interpolate_monopole_grav() 21 0.02771 0.02818 0.02894 0.85% Castro::construct_new_gravity_source() 10 0.02032 0.02366 0.02696 0.79% Castro::post_init() 1 0.02473 0.02512 0.02665 0.78% Amr::writePlotFile() 2 0.02337 0.02496 0.02542 0.75% Castro::post_timestep() 10 0.01542 0.01584 0.01654 0.48% Castro::apply_source_to_state() 20 0.0131 0.01462 0.01592 0.47% MultiFab::Saxpy() 20 0.01305 0.01458 0.01587 0.47% VisMF::Write(FabArray) 2 0.01245 0.01289 0.01496 0.44% Castro::check_for_nan() 20 0.01019 0.01122 0.01236 0.36% MultiFab::contains_nan() 20 0.01016 0.0112 0.01234 0.36% Castro::construct_old_source() 50 0.007306 0.01116 0.01231 0.36% Castro::construct_old_gravity_source() 10 0.007261 0.01109 0.01223 0.36% FabArray::setDomainBndry() 41 0.007042 0.01004 0.01152 0.34% Castro::Castro() 1 0.009658 0.009861 0.01068 0.31% Castro::computeNewDt() 9 0.006847 0.0076 0.008323 0.24% Castro::initMFs() 1 0.005434 0.005651 0.006824 0.20% Castro::enforce_min_density() 62 0.005833 0.006143 0.006447 0.19% AmrLevel::AmrLevel(dm) 1 0.004446 0.004547 0.004933 0.14% StateData::define() 4 0.004426 0.004529 0.004915 0.14% Castro::swap_state_time_levels() 10 0.002795 0.003556 0.003795 0.11% Castro::post_regrid() 1 0.001525 0.001579 0.001649 0.05% Castro::buildMetrics() 1 0.001385 0.001423 0.001554 0.05% Castro::finalize_do_advance() 10 0.0004656 0.0008918 0.001025 0.03% Amr::InitAmr() 1 0.0002925 0.0003169 0.0004459 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.254e-05 0.0001411 0.0001626 0.00% DistributionMapping::LeastUsedCPUs() 1 7.324e-06 0.0001347 0.0001546 0.00% Castro::enforce_consistent_e() 1 7.545e-05 8.666e-05 0.0001028 0.00% FabArrayBase::getCPC() 41 6.762e-05 7.971e-05 9.035e-05 0.00% Castro::finalize_advance() 10 6.524e-05 6.874e-05 7.326e-05 0.00% Amr::writeSmallPlotFile() 1 3.395e-05 4.963e-05 6.801e-05 0.00% FabArrayBase::CPC::define() 2 2.355e-05 2.99e-05 3.734e-05 0.00% Castro::enforce_speed_limit() 62 2.456e-05 2.722e-05 3.032e-05 0.00% Gravity::swapTimeLevels() 10 1.055e-05 1.364e-05 1.619e-05 0.00% Castro::FluxRegCrseInit 10 7.66e-06 1.032e-05 1.504e-05 0.00% Gravity::set_mass_offset() 10 8.096e-06 9.795e-06 1.234e-05 0.00% Castro::create_source_corrector() 10 8.817e-06 1.048e-05 1.225e-05 0.00% Castro::retry_advance_ctu() 10 5.44e-06 7.851e-06 1.192e-05 0.00% Amr::initSubcycle() 1 8.128e-06 8.654e-06 9.706e-06 0.00% Castro::FluxRegFineAdd() 10 2.002e-06 3.048e-06 7.055e-06 0.00% DistributionMapping::Distribute() 1 1.022e-06 1.213e-06 1.417e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-3-gdf9b6944a6d5) finalized