MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-3-gdf9b6944a6d5) initialized Starting run at 00:11:06 UTC on 2022-05-04. Successfully read inputs file ... Castro git describe: 22.05-10-g7abd96c90 AMReX git describe: 22.05-3-gdf9b6944a Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013025421 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.345401848 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335068698 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.325497368 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.32505014 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.325445766 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.351550314 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.305338056 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.297615639 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.300194786 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.298969436 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.039048347 seconds Ending run at 00:11:09 UTC on 2022-05-04. Run time = 3.42711565 Run time without initialization = 3.253112907 Average number of zones advanced per microsecond: 0.806 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.427 ... 3.427 ... 3.427 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1903 2.2536 2.3063 67.29% Gravity::make_radial_gravity() 21 0.3258 0.3398 0.3556 10.37% Castro::do_advance_ctu() 10 0.04508 0.09746 0.1658 4.84% Castro::initData() 1 0.03864 0.07816 0.114 3.33% Castro::estTimeStep() 21 0.01911 0.05903 0.103 3.01% FabArray::setVal() 143 0.07192 0.0743 0.07862 2.29% FabArray::ParallelCopy_finish() 41 0.03224 0.03905 0.05282 1.54% Castro::reset_internal_energy(Fab) 1008 0.04746 0.0495 0.05147 1.50% StateData::FillBoundary(geom) 41 0.03862 0.04194 0.04657 1.36% FabArray::ParallelCopy_nowait() 41 0.03974 0.04221 0.04419 1.29% VisMF::Write(FabArray) 2 0.04061 0.04124 0.04361 1.27% Castro::normalize_species() 62 0.04102 0.04185 0.04299 1.25% FillPatchIterator::Initialize 41 0.0243 0.03194 0.03508 1.02% Gravity::interpolate_monopole_grav() 21 0.02767 0.02789 0.02821 0.82% Castro::construct_new_gravity_source() 10 0.02268 0.02474 0.02662 0.78% Castro::expand_state() 10 0.01363 0.01873 0.02146 0.63% Castro::computeTemp() 63 0.01699 0.01834 0.01923 0.56% Castro::initialize_do_advance() 10 0.01271 0.01668 0.0179 0.52% MultiFab::Saxpy() 20 0.01484 0.01585 0.0169 0.49% Castro::initialize_advance() 10 0.01059 0.01262 0.01477 0.43% Gravity::get_new_grav_vector() 11 0.01026 0.01144 0.01339 0.39% MultiFab::contains_nan() 20 0.01038 0.01125 0.01267 0.37% Castro::construct_old_gravity_source() 10 0.009873 0.0116 0.01224 0.36% FabArray::setDomainBndry() 41 0.007073 0.01049 0.01199 0.35% Amr::writePlotFile() 2 0.008695 0.01097 0.01158 0.34% Gravity::get_old_grav_vector() 10 0.007879 0.0094 0.0107 0.31% Castro::construct_new_source() 50 0.006468 0.006734 0.00702 0.20% Castro::enforce_min_density() 62 0.006122 0.006309 0.006568 0.19% Castro::initMFs() 1 0.00539 0.005712 0.006538 0.19% StateData::define() 4 0.004338 0.004548 0.004856 0.14% Castro::swap_state_time_levels() 10 0.002978 0.003846 0.004005 0.12% main() 1 0.003544 0.003786 0.003987 0.12% Amr::coarseTimeStep() 10 0.0004444 0.0008109 0.001857 0.05% Castro::finalize_do_advance() 10 0.001112 0.001347 0.001512 0.04% Castro::buildMetrics() 1 0.001263 0.0013 0.001392 0.04% Amr::timeStep() 10 0.0001548 0.0002227 0.0004997 0.01% Amr::InitAmr() 1 0.0002544 0.0002935 0.0004176 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002875 0.0002996 0.0003143 0.01% DistributionMapping::LeastUsedCPUs() 1 8.512e-06 0.0001457 0.0001837 0.01% Castro::clean_state() 62 0.0001499 0.0001628 0.0001809 0.01% StateDataPhysBCFunct::() 41 0.0001274 0.000139 0.0001673 0.00% Amr::FinalizeInit() 1 3.67e-06 1.874e-05 0.0001057 0.00% Castro::Castro() 1 4.771e-05 7.654e-05 0.0001049 0.00% Castro::enforce_consistent_e() 1 8.29e-05 9.038e-05 9.617e-05 0.00% Castro::construct_old_source() 50 7e-05 8.107e-05 9.459e-05 0.00% Castro::do_old_sources() 10 5.64e-05 6.869e-05 8.366e-05 0.00% Castro::do_new_sources() 10 5.922e-05 7.006e-05 8.321e-05 0.00% FillPatchSingleLevel 41 6.343e-05 6.887e-05 8.046e-05 0.00% Castro::construct_old_gravity() 10 4.723e-05 5.51e-05 7.508e-05 0.00% Amr::writeSmallPlotFile() 1 2.643e-05 5.37e-05 7.309e-05 0.00% FabArray::ParallelCopy() 41 6.057e-05 6.548e-05 7.073e-05 0.00% Castro::subcycle_advance_ctu() 10 4.471e-05 5.644e-05 6.944e-05 0.00% FabArrayBase::getCPC() 41 5.158e-05 5.925e-05 6.877e-05 0.00% Castro::advance() 10 4.199e-05 4.547e-05 6.006e-05 0.00% Castro::construct_new_gravity() 10 3.863e-05 4.785e-05 5.743e-05 0.00% Castro::finalize_advance() 10 4.757e-05 5.137e-05 5.686e-05 0.00% Castro::apply_source_to_state() 20 3.734e-05 4.782e-05 5.652e-05 0.00% FabArrayBase::CPC::define() 2 2.415e-05 2.804e-05 4.299e-05 0.00% Amr::defBaseLevel() 1 2.342e-05 2.82e-05 3.687e-05 0.00% Castro::enforce_speed_limit() 62 2.557e-05 2.877e-05 3.193e-05 0.00% Castro::check_for_nan() 20 2.059e-05 2.374e-05 2.8e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.447e-05 2.098e-05 2.776e-05 0.00% Castro::computeNewDt() 9 7.956e-06 1.073e-05 2.432e-05 0.00% Gravity::swapTimeLevels() 10 1.126e-05 1.464e-05 2.015e-05 0.00% Amr::initSubcycle() 1 8.036e-06 9.734e-06 1.618e-05 0.00% Castro::create_source_corrector() 10 9.824e-06 1.14e-05 1.473e-05 0.00% Castro::post_init() 1 8.128e-06 1.006e-05 1.294e-05 0.00% Castro::post_timestep() 10 8.851e-06 1.019e-05 1.173e-05 0.00% Castro::FluxRegCrseInit 10 7.263e-06 9.156e-06 1.115e-05 0.00% Gravity::set_mass_offset() 10 8.378e-06 9.794e-06 1.064e-05 0.00% Castro::retry_advance_ctu() 10 5.134e-06 5.791e-06 7.593e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.214e-06 5.695e-06 7.255e-06 0.00% Amr::InitializeInit() 1 2.059e-06 2.945e-06 6.985e-06 0.00% Castro::post_regrid() 1 1.777e-06 3.357e-06 4.894e-06 0.00% Castro::computeInitialDt() 2 3.676e-06 4.073e-06 4.762e-06 0.00% Amr::init() 1 1.931e-06 2.462e-06 3.383e-06 0.00% Castro::FluxRegFineAdd() 10 2.134e-06 2.391e-06 2.878e-06 0.00% Amr::initialInit() 1 1.215e-06 1.575e-06 1.966e-06 0.00% DistributionMapping::Distribute() 1 1.181e-06 1.293e-06 1.45e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.427 3.427 3.427 100.00% Amr::coarseTimeStep() 10 3.21 3.21 3.21 93.67% Amr::timeStep() 10 3.2 3.201 3.202 93.42% Castro::advance() 10 3.185 3.185 3.185 92.94% Castro::subcycle_advance_ctu() 10 3.105 3.108 3.11 90.75% Castro::do_advance_ctu() 10 3.105 3.108 3.11 90.75% Castro::construct_ctu_hydro_source() 10 2.19 2.254 2.306 67.29% Gravity::make_radial_gravity() 21 0.3258 0.3398 0.3556 10.37% Gravity::get_new_grav_vector() 11 0.2195 0.221 0.2224 6.49% Castro::construct_old_gravity() 10 0.194 0.205 0.2187 6.38% Gravity::get_old_grav_vector() 10 0.1932 0.2042 0.218 6.36% Castro::construct_new_gravity() 10 0.1961 0.1972 0.1981 5.78% FillPatchIterator::Initialize 41 0.1561 0.166 0.1738 5.07% Amr::init() 1 0.1734 0.1736 0.1736 5.07% Castro::initialize_do_advance() 10 0.1442 0.1564 0.1633 4.76% Amr::initialInit() 1 0.1602 0.1605 0.1606 4.69% Amr::InitializeInit() 1 0.05714 0.0968 0.1332 3.89% Amr::defBaseLevel() 1 0.05713 0.09679 0.1332 3.89% FillPatchSingleLevel 41 0.1174 0.1236 0.1319 3.85% Castro::clean_state() 62 0.1111 0.1155 0.1193 3.48% Castro::initData() 1 0.04297 0.08226 0.1177 3.44% Castro::expand_state() 10 0.09647 0.109 0.1159 3.38% Amr::FinalizeInit() 1 0.02724 0.06367 0.1034 3.02% Castro::estTimeStep() 21 0.01911 0.05903 0.103 3.01% FabArray::ParallelCopy() 41 0.07563 0.08141 0.09273 2.71% Castro::initialize_advance() 10 0.07468 0.07665 0.07958 2.32% FabArray::setVal() 143 0.07192 0.0743 0.07862 2.29% Castro::computeInitialDt() 2 0.001687 0.03817 0.07787 2.27% Castro::computeTemp() 63 0.06475 0.06814 0.07097 2.07% Castro::do_new_sources() 10 0.06142 0.06536 0.06945 2.03% FabArray::ParallelCopy_finish() 41 0.03224 0.03905 0.05282 1.54% Amr::writePlotFile() 2 0.05211 0.05221 0.05231 1.53% Castro::reset_internal_energy(MultiFab) 63 0.04776 0.0498 0.05177 1.51% Castro::reset_internal_energy(Fab) 1008 0.04746 0.0495 0.05147 1.50% Castro::do_old_sources() 10 0.04697 0.04852 0.04939 1.44% StateDataPhysBCFunct::() 41 0.03875 0.04208 0.0467 1.36% StateData::FillBoundary(geom) 41 0.03862 0.04194 0.04657 1.36% FabArray::ParallelCopy_nowait() 41 0.03984 0.0423 0.04427 1.29% VisMF::Write(FabArray) 2 0.04061 0.04124 0.04361 1.27% Castro::normalize_species() 62 0.04102 0.04185 0.04299 1.25% Castro::construct_new_source() 50 0.0293 0.03147 0.03343 0.98% Gravity::interpolate_monopole_grav() 21 0.02767 0.02789 0.02821 0.82% Castro::construct_new_gravity_source() 10 0.02268 0.02474 0.02662 0.78% Castro::post_init() 1 0.02459 0.0248 0.02491 0.73% Castro::apply_source_to_state() 20 0.01488 0.01589 0.01695 0.49% MultiFab::Saxpy() 20 0.01484 0.01585 0.0169 0.49% Castro::post_timestep() 10 0.01483 0.01557 0.0163 0.48% Castro::check_for_nan() 20 0.0104 0.01127 0.01269 0.37% MultiFab::contains_nan() 20 0.01038 0.01125 0.01267 0.37% Castro::construct_old_source() 50 0.009945 0.01168 0.01233 0.36% Castro::construct_old_gravity_source() 10 0.009873 0.0116 0.01224 0.36% FabArray::setDomainBndry() 41 0.007073 0.01049 0.01199 0.35% Castro::Castro() 1 0.009285 0.009779 0.01056 0.31% Castro::computeNewDt() 9 0.006782 0.007641 0.008592 0.25% Castro::enforce_min_density() 62 0.006122 0.006309 0.006568 0.19% Castro::initMFs() 1 0.00539 0.005712 0.006538 0.19% AmrLevel::AmrLevel(dm) 1 0.004359 0.004569 0.004882 0.14% StateData::define() 4 0.004338 0.004548 0.004856 0.14% Castro::swap_state_time_levels() 10 0.002978 0.003846 0.004005 0.12% Castro::post_regrid() 1 0.001529 0.001589 0.001669 0.05% Castro::buildMetrics() 1 0.00139 0.001435 0.001555 0.05% Castro::finalize_do_advance() 10 0.001112 0.001347 0.001512 0.04% Amr::InitAmr() 1 0.0002626 0.0003033 0.0004271 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.407e-05 0.0001527 0.0001907 0.01% DistributionMapping::LeastUsedCPUs() 1 8.512e-06 0.0001457 0.0001837 0.01% FabArrayBase::getCPC() 41 7.617e-05 8.729e-05 0.0001013 0.00% Castro::enforce_consistent_e() 1 8.29e-05 9.038e-05 9.617e-05 0.00% Amr::writeSmallPlotFile() 1 2.643e-05 5.37e-05 7.309e-05 0.00% Castro::finalize_advance() 10 5.95e-05 6.292e-05 6.717e-05 0.00% FabArrayBase::CPC::define() 2 2.415e-05 2.804e-05 4.299e-05 0.00% Castro::enforce_speed_limit() 62 2.557e-05 2.877e-05 3.193e-05 0.00% Gravity::swapTimeLevels() 10 1.126e-05 1.464e-05 2.015e-05 0.00% Amr::initSubcycle() 1 8.036e-06 9.734e-06 1.618e-05 0.00% Castro::create_source_corrector() 10 9.824e-06 1.14e-05 1.473e-05 0.00% Castro::FluxRegCrseInit 10 7.263e-06 9.156e-06 1.115e-05 0.00% Gravity::set_mass_offset() 10 8.378e-06 9.794e-06 1.064e-05 0.00% Castro::retry_advance_ctu() 10 5.134e-06 5.791e-06 7.593e-06 0.00% Castro::FluxRegFineAdd() 10 2.134e-06 2.391e-06 2.878e-06 0.00% DistributionMapping::Distribute() 1 1.181e-06 1.293e-06 1.45e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-3-gdf9b6944a6d5) finalized