MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-3-gdf9b6944a6d5) initialized Starting run at 05:37:40 UTC on 2022-05-03. Successfully read inputs file ... Castro git describe: 22.05-2-g1289ecab7 AMReX git describe: 22.05-3-gdf9b6944a Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013292933 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.351482201 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342034275 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.318280471 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.317158994 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.319063999 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.350804248 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.33383352 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311505325 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313854214 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311253484 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009953253 seconds Ending run at 05:37:43 UTC on 2022-05-03. Run time = 3.528918917 Run time without initialization = 3.282825211 Average number of zones advanced per microsecond: 0.799 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.528 ... 3.529 ... 3.529 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2290 2.2621 2.3198 65.74% Gravity::make_radial_gravity() 21 0.3525 0.3671 0.3745 10.61% Castro::do_advance_ctu() 10 0.07674 0.1393 0.172 4.87% Castro::initData() 1 0.03847 0.09037 0.1656 4.69% Castro::estTimeStep() 21 0.02714 0.1057 0.1619 4.59% FabArray::setVal() 143 0.06289 0.07158 0.07728 2.19% FabArray::ParallelCopy_finish() 41 0.03775 0.04414 0.07097 2.01% Castro::reset_internal_energy(Fab) 1008 0.04791 0.0505 0.0528 1.50% StateData::FillBoundary(geom) 41 0.03847 0.04143 0.0459 1.30% Castro::normalize_species() 62 0.04174 0.0425 0.04356 1.23% FabArray::ParallelCopy_nowait() 41 0.03635 0.03945 0.04158 1.18% FillPatchIterator::Initialize 41 0.02457 0.02924 0.03268 0.93% Gravity::interpolate_monopole_grav() 21 0.02785 0.02826 0.02869 0.81% Castro::expand_state() 10 0.01422 0.01958 0.02671 0.76% Castro::construct_new_gravity_source() 10 0.02137 0.02339 0.02463 0.70% Castro::computeTemp() 63 0.01792 0.01878 0.01955 0.55% Castro::initialize_do_advance() 10 0.01118 0.01581 0.01753 0.50% MultiFab::Saxpy() 20 0.01193 0.01394 0.01552 0.44% VisMF::Write(FabArray) 2 0.01162 0.01227 0.01486 0.42% MultiFab::contains_nan() 20 0.01054 0.01241 0.01456 0.41% Castro::initialize_advance() 10 0.007736 0.0116 0.01398 0.40% Amr::writePlotFile() 2 0.008608 0.01138 0.01228 0.35% Gravity::get_new_grav_vector() 11 0.00978 0.0108 0.01224 0.35% Gravity::get_old_grav_vector() 10 0.007356 0.009139 0.01168 0.33% Castro::construct_old_gravity_source() 10 0.00768 0.01018 0.01116 0.32% FabArray::setDomainBndry() 41 0.007386 0.009464 0.01099 0.31% Castro::initMFs() 1 0.005416 0.006382 0.008594 0.24% Castro::enforce_min_density() 62 0.006417 0.006732 0.007046 0.20% Castro::construct_new_source() 50 0.005923 0.006493 0.006807 0.19% StateData::define() 4 0.004497 0.005136 0.006558 0.19% main() 1 0.004042 0.004332 0.004553 0.13% Castro::swap_state_time_levels() 10 0.002828 0.003626 0.003876 0.11% Castro::buildMetrics() 1 0.001266 0.001456 0.001899 0.05% Amr::coarseTimeStep() 10 0.0003601 0.0005742 0.001238 0.04% Castro::finalize_do_advance() 10 0.0004703 0.001046 0.001238 0.04% Amr::InitAmr() 1 0.0002836 0.0003466 0.0004473 0.01% Amr::timeStep() 10 0.0001717 0.0002249 0.0004274 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002782 0.0003107 0.0003516 0.01% DistributionMapping::LeastUsedCPUs() 1 8.058e-06 0.0001397 0.0002007 0.01% Castro::clean_state() 62 0.0001331 0.0001503 0.0001771 0.01% Castro::enforce_consistent_e() 1 7.894e-05 0.0001062 0.0001735 0.00% StateDataPhysBCFunct::() 41 0.0001034 0.0001244 0.0001523 0.00% Castro::construct_old_source() 50 4.45e-05 6.757e-05 9.933e-05 0.00% FillPatchSingleLevel 41 5.682e-05 6.59e-05 7.211e-05 0.00% Castro::do_old_sources() 10 4.61e-05 5.456e-05 6.986e-05 0.00% Castro::subcycle_advance_ctu() 10 3.41e-05 5.189e-05 6.933e-05 0.00% Amr::FinalizeInit() 1 4.714e-06 1.391e-05 6.931e-05 0.00% Castro::do_new_sources() 10 4.816e-05 5.798e-05 6.764e-05 0.00% FabArrayBase::getCPC() 41 4.281e-05 5.214e-05 6.611e-05 0.00% Castro::Castro() 1 5.051e-05 5.705e-05 6.408e-05 0.00% FabArray::ParallelCopy() 41 5.013e-05 5.679e-05 6.166e-05 0.00% Amr::writeSmallPlotFile() 1 2.509e-05 4.435e-05 6.005e-05 0.00% Castro::finalize_advance() 10 4.769e-05 5.231e-05 5.776e-05 0.00% Castro::construct_old_gravity() 10 3.974e-05 4.573e-05 5.256e-05 0.00% Castro::apply_source_to_state() 20 3.239e-05 3.98e-05 4.764e-05 0.00% Castro::advance() 10 2.973e-05 3.839e-05 4.662e-05 0.00% Castro::construct_new_gravity() 10 3.498e-05 4.1e-05 4.538e-05 0.00% Amr::defBaseLevel() 1 2.477e-05 3.149e-05 3.658e-05 0.00% FabArrayBase::CPC::define() 2 2.271e-05 2.621e-05 3.247e-05 0.00% Castro::enforce_speed_limit() 62 2.355e-05 2.62e-05 2.963e-05 0.00% Castro::check_for_nan() 20 1.948e-05 2.258e-05 2.627e-05 0.00% Castro::post_init() 1 8.781e-06 1.264e-05 2.514e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.349e-05 1.722e-05 2.138e-05 0.00% Castro::create_source_corrector() 10 9.059e-06 1.159e-05 1.927e-05 0.00% Gravity::swapTimeLevels() 10 9.771e-06 1.252e-05 1.615e-05 0.00% Amr::initSubcycle() 1 8.272e-06 1.082e-05 1.52e-05 0.00% Castro::FluxRegCrseInit 10 8.737e-06 1.015e-05 1.345e-05 0.00% Castro::post_timestep() 10 8.919e-06 1.043e-05 1.277e-05 0.00% Gravity::set_mass_offset() 10 8.923e-06 9.813e-06 1.066e-05 0.00% Castro::computeNewDt() 9 7.015e-06 8.159e-06 8.814e-06 0.00% Castro::retry_advance_ctu() 10 5.139e-06 6.184e-06 6.887e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.645e-06 4.771e-06 6.445e-06 0.00% Amr::InitializeInit() 1 1.829e-06 2.76e-06 5.864e-06 0.00% Castro::post_regrid() 1 3.425e-06 4.439e-06 5.407e-06 0.00% Castro::computeInitialDt() 2 4.003e-06 4.513e-06 4.915e-06 0.00% Castro::FluxRegFineAdd() 10 2.229e-06 2.499e-06 3.084e-06 0.00% Amr::init() 1 1.885e-06 2.261e-06 2.608e-06 0.00% Amr::initialInit() 1 1.446e-06 1.635e-06 1.918e-06 0.00% DistributionMapping::Distribute() 1 9.31e-07 1.143e-06 1.42e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.528 3.529 3.529 100.00% Amr::coarseTimeStep() 10 3.268 3.268 3.268 92.62% Amr::timeStep() 10 3.259 3.259 3.26 92.38% Castro::advance() 10 3.243 3.243 3.243 91.91% Castro::subcycle_advance_ctu() 10 3.166 3.169 3.176 89.99% Castro::do_advance_ctu() 10 3.165 3.169 3.176 89.99% Castro::construct_ctu_hydro_source() 10 2.229 2.262 2.32 65.74% Gravity::make_radial_gravity() 21 0.3525 0.3671 0.3745 10.61% Amr::init() 1 0.2455 0.2456 0.2457 6.96% Gravity::get_new_grav_vector() 11 0.2343 0.2355 0.2372 6.72% Amr::initialInit() 1 0.2316 0.232 0.2322 6.58% Castro::construct_old_gravity() 10 0.2053 0.2174 0.2245 6.36% Gravity::get_old_grav_vector() 10 0.2043 0.2165 0.2239 6.34% Castro::construct_new_gravity() 10 0.197 0.198 0.1991 5.64% Amr::InitializeInit() 1 0.05642 0.1101 0.1904 5.40% Amr::defBaseLevel() 1 0.05642 0.1101 0.1904 5.40% FillPatchIterator::Initialize 41 0.1546 0.1641 0.1828 5.18% Amr::FinalizeInit() 1 0.04168 0.1219 0.1754 4.97% Castro::initData() 1 0.04222 0.09475 0.1715 4.86% Castro::estTimeStep() 21 0.02714 0.1057 0.1619 4.59% Castro::initialize_do_advance() 10 0.1496 0.1551 0.1618 4.59% FillPatchSingleLevel 41 0.1176 0.1253 0.1508 4.27% Castro::computeInitialDt() 2 0.002125 0.08259 0.1363 3.86% Castro::clean_state() 62 0.1147 0.1179 0.1217 3.45% Castro::expand_state() 10 0.1033 0.1083 0.1139 3.23% FabArray::ParallelCopy() 41 0.07705 0.08372 0.1075 3.05% Castro::initialize_advance() 10 0.06694 0.07444 0.0778 2.20% FabArray::setVal() 143 0.06289 0.07158 0.07728 2.19% Castro::computeTemp() 63 0.06616 0.0696 0.0725 2.05% FabArray::ParallelCopy_finish() 41 0.03775 0.04414 0.07097 2.01% Castro::do_new_sources() 10 0.05736 0.06266 0.06585 1.87% Castro::reset_internal_energy(MultiFab) 63 0.04824 0.05081 0.0531 1.50% Castro::reset_internal_energy(Fab) 1008 0.04791 0.0505 0.0528 1.50% Castro::do_old_sources() 10 0.04129 0.04643 0.04824 1.37% StateDataPhysBCFunct::() 41 0.0386 0.04156 0.04606 1.31% StateData::FillBoundary(geom) 41 0.03847 0.04143 0.0459 1.30% Castro::normalize_species() 62 0.04174 0.0425 0.04356 1.23% FabArray::ParallelCopy_nowait() 41 0.03645 0.03953 0.04166 1.18% Castro::post_init() 1 0.03707 0.03831 0.03889 1.10% Castro::construct_new_source() 50 0.0273 0.02988 0.03143 0.89% Gravity::interpolate_monopole_grav() 21 0.02785 0.02826 0.02869 0.81% Castro::construct_new_gravity_source() 10 0.02137 0.02339 0.02463 0.70% Amr::writePlotFile() 2 0.02339 0.02365 0.02392 0.68% Castro::post_timestep() 10 0.01533 0.0158 0.01635 0.46% Castro::apply_source_to_state() 20 0.01198 0.01398 0.01556 0.44% MultiFab::Saxpy() 20 0.01193 0.01394 0.01552 0.44% VisMF::Write(FabArray) 2 0.01162 0.01227 0.01486 0.42% Castro::check_for_nan() 20 0.01057 0.01243 0.01458 0.41% MultiFab::contains_nan() 20 0.01054 0.01241 0.01456 0.41% Castro::Castro() 1 0.008962 0.009992 0.01232 0.35% Castro::construct_old_source() 50 0.007725 0.01025 0.01126 0.32% Castro::construct_old_gravity_source() 10 0.00768 0.01018 0.01116 0.32% FabArray::setDomainBndry() 41 0.007386 0.009464 0.01099 0.31% Castro::initMFs() 1 0.005416 0.006382 0.008594 0.24% Castro::computeNewDt() 9 0.006826 0.007576 0.008224 0.23% Castro::enforce_min_density() 62 0.006417 0.006732 0.007046 0.20% AmrLevel::AmrLevel(dm) 1 0.004512 0.005153 0.006576 0.19% StateData::define() 4 0.004497 0.005136 0.006558 0.19% Castro::swap_state_time_levels() 10 0.002828 0.003626 0.003876 0.11% Castro::post_regrid() 1 0.001546 0.001926 0.002941 0.08% Castro::buildMetrics() 1 0.001381 0.001606 0.00212 0.06% Castro::finalize_do_advance() 10 0.0004703 0.001046 0.001238 0.04% Amr::InitAmr() 1 0.0002929 0.0003574 0.0004615 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.374e-05 0.0001456 0.0002083 0.01% DistributionMapping::LeastUsedCPUs() 1 8.058e-06 0.0001397 0.0002007 0.01% Castro::enforce_consistent_e() 1 7.894e-05 0.0001062 0.0001735 0.00% FabArrayBase::getCPC() 41 6.61e-05 7.835e-05 9.318e-05 0.00% Castro::finalize_advance() 10 5.872e-05 6.496e-05 7.116e-05 0.00% Amr::writeSmallPlotFile() 1 2.509e-05 4.435e-05 6.005e-05 0.00% FabArrayBase::CPC::define() 2 2.271e-05 2.621e-05 3.247e-05 0.00% Castro::enforce_speed_limit() 62 2.355e-05 2.62e-05 2.963e-05 0.00% Castro::create_source_corrector() 10 9.059e-06 1.159e-05 1.927e-05 0.00% Gravity::swapTimeLevels() 10 9.771e-06 1.252e-05 1.615e-05 0.00% Amr::initSubcycle() 1 8.272e-06 1.082e-05 1.52e-05 0.00% Castro::FluxRegCrseInit 10 8.737e-06 1.015e-05 1.345e-05 0.00% Gravity::set_mass_offset() 10 8.923e-06 9.813e-06 1.066e-05 0.00% Castro::retry_advance_ctu() 10 5.139e-06 6.184e-06 6.887e-06 0.00% Castro::FluxRegFineAdd() 10 2.229e-06 2.499e-06 3.084e-06 0.00% DistributionMapping::Distribute() 1 9.31e-07 1.143e-06 1.42e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-3-gdf9b6944a6d5) finalized