MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-4-gef52970b80e3) initialized Starting run at 00:29:36 UTC on 2022-05-05. Successfully read inputs file ... Castro git describe: 22.05-30-g77c107ccc AMReX git describe: 22.05-4-gef52970b8 Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017256375 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.414870639 [STEP 1] FAB kilobyte spread across MPI nodes: [57854 ... 57854] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.330691327 [STEP 2] FAB kilobyte spread across MPI nodes: [57854 ... 57854] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.354236708 [STEP 3] FAB kilobyte spread across MPI nodes: [57854 ... 57854] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.324855901 [STEP 4] FAB kilobyte spread across MPI nodes: [57854 ... 57854] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.337337667 [STEP 5] FAB kilobyte spread across MPI nodes: [57854 ... 57854] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.321237216 [STEP 6] FAB kilobyte spread across MPI nodes: [57854 ... 57854] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.300772554 [STEP 7] FAB kilobyte spread across MPI nodes: [57854 ... 57854] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.300069171 [STEP 8] FAB kilobyte spread across MPI nodes: [57854 ... 57854] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.301246297 [STEP 9] FAB kilobyte spread across MPI nodes: [57854 ... 57854] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.300614827 [STEP 10] FAB kilobyte spread across MPI nodes: [57854 ... 57854] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009365884 seconds Ending run at 00:29:40 UTC on 2022-05-05. Run time = 3.497250606 Run time without initialization = 3.299010343 Average number of zones advanced per microsecond: 0.795 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.497 ... 3.497 ... 3.497 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1846 2.2709 2.3105 66.06% Gravity::make_radial_gravity() 21 0.362 0.3722 0.3861 11.04% Castro::do_advance_ctu() 10 0.08516 0.129 0.218 6.23% Castro::initData() 1 0.0386 0.08818 0.122 3.49% Castro::estTimeStep() 21 0.02614 0.05769 0.1155 3.30% FabArray::setVal() 143 0.06382 0.07273 0.08239 2.36% FabArray::ParallelCopy_finish() 41 0.04223 0.0515 0.05998 1.71% Castro::reset_internal_energy(Fab) 1008 0.04845 0.05123 0.05381 1.54% StateData::FillBoundary(geom) 41 0.03776 0.0423 0.04639 1.33% Castro::normalize_species() 62 0.04109 0.04268 0.04435 1.27% FabArray::ParallelCopy_nowait() 41 0.03714 0.03985 0.04199 1.20% FillPatchIterator::Initialize 41 0.02543 0.03183 0.03577 1.02% Gravity::interpolate_monopole_grav() 21 0.02761 0.02816 0.02932 0.84% Castro::construct_new_gravity_source() 10 0.02181 0.02419 0.02734 0.78% Castro::computeTemp() 63 0.01827 0.01933 0.02048 0.59% Castro::expand_state() 10 0.01252 0.01784 0.02014 0.58% Castro::initialize_do_advance() 10 0.01138 0.0168 0.01914 0.55% VisMF::Write(FabArray) 2 0.01122 0.01223 0.0161 0.46% MultiFab::Saxpy() 20 0.01418 0.0147 0.01524 0.44% Amr::writePlotFile() 2 0.01073 0.01299 0.01438 0.41% Gravity::get_new_grav_vector() 11 0.009978 0.01141 0.01386 0.40% Castro::initialize_advance() 10 0.009497 0.01141 0.01348 0.39% MultiFab::contains_nan() 20 0.009851 0.01059 0.01147 0.33% Castro::construct_old_gravity_source() 10 0.008743 0.01054 0.01109 0.32% FabArray::setDomainBndry() 41 0.006715 0.009688 0.0109 0.31% Gravity::get_old_grav_vector() 10 0.007857 0.009075 0.01021 0.29% Castro::initMFs() 1 0.005395 0.006448 0.008526 0.24% Castro::enforce_min_density() 62 0.006454 0.006805 0.007262 0.21% StateData::define() 4 0.004477 0.005162 0.006603 0.19% Castro::construct_new_source() 50 0.006116 0.0063 0.006425 0.18% Castro::swap_state_time_levels() 10 0.002959 0.004177 0.005517 0.16% main() 1 0.003665 0.003785 0.003921 0.11% Castro::buildMetrics() 1 0.001264 0.00148 0.0019 0.05% Amr::coarseTimeStep() 10 0.0003563 0.0006172 0.00135 0.04% Castro::finalize_do_advance() 10 0.0004645 0.0008836 0.001085 0.03% Amr::InitAmr() 1 0.0002748 0.0003622 0.0005061 0.01% Amr::timeStep() 10 0.0001724 0.000231 0.0004301 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002703 0.000298 0.0003249 0.01% DistributionMapping::LeastUsedCPUs() 1 8.745e-06 0.000168 0.0002618 0.01% Castro::clean_state() 62 0.0001577 0.0001761 0.0001994 0.01% StateDataPhysBCFunct::() 41 9.506e-05 0.0001358 0.0001669 0.00% Castro::enforce_consistent_e() 1 8.122e-05 0.0001012 0.0001354 0.00% FillPatchSingleLevel 41 6.36e-05 7.057e-05 8.136e-05 0.00% Castro::construct_old_source() 50 5.33e-05 6.721e-05 8.05e-05 0.00% FabArray::ParallelCopy() 41 5.19e-05 6.193e-05 7.29e-05 0.00% Castro::Castro() 1 5.302e-05 5.905e-05 6.995e-05 0.00% Castro::subcycle_advance_ctu() 10 4.168e-05 5.414e-05 6.813e-05 0.00% Castro::do_new_sources() 10 5.085e-05 5.727e-05 6.696e-05 0.00% Amr::FinalizeInit() 1 4.293e-06 1.292e-05 6.623e-05 0.00% Amr::writeSmallPlotFile() 1 2.52e-05 5.249e-05 6.584e-05 0.00% Castro::do_old_sources() 10 4.566e-05 5.662e-05 6.562e-05 0.00% FabArrayBase::getCPC() 41 4.015e-05 4.871e-05 6.194e-05 0.00% Castro::finalize_advance() 10 4.772e-05 5.204e-05 5.712e-05 0.00% Castro::apply_source_to_state() 20 3.72e-05 4.625e-05 5.575e-05 0.00% Castro::construct_old_gravity() 10 4.19e-05 4.803e-05 5.268e-05 0.00% Castro::construct_new_gravity() 10 3.424e-05 4.108e-05 4.932e-05 0.00% FabArrayBase::CPC::define() 2 2.558e-05 3.157e-05 4.722e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.655e-05 2.394e-05 4.503e-05 0.00% Castro::advance() 10 3.313e-05 3.86e-05 4.158e-05 0.00% Amr::defBaseLevel() 1 2.346e-05 2.944e-05 3.302e-05 0.00% Castro::enforce_speed_limit() 62 2.397e-05 2.765e-05 3.24e-05 0.00% Castro::check_for_nan() 20 2.047e-05 2.363e-05 2.821e-05 0.00% Castro::computeNewDt() 9 8.452e-06 1.07e-05 2.379e-05 0.00% Castro::post_timestep() 10 8.227e-06 1.081e-05 1.986e-05 0.00% Castro::post_init() 1 1.063e-05 1.381e-05 1.79e-05 0.00% Gravity::swapTimeLevels() 10 1.073e-05 1.403e-05 1.779e-05 0.00% Amr::initSubcycle() 1 8.362e-06 1.013e-05 1.513e-05 0.00% Castro::create_source_corrector() 10 8.415e-06 1.006e-05 1.181e-05 0.00% Gravity::set_mass_offset() 10 8.704e-06 9.81e-06 1.085e-05 0.00% Castro::FluxRegCrseInit 10 7.856e-06 9.106e-06 1.049e-05 0.00% Amr::InitializeInit() 1 2.127e-06 3.14e-06 7.427e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.784e-06 4.76e-06 6.665e-06 0.00% Castro::retry_advance_ctu() 10 4.91e-06 5.462e-06 6.09e-06 0.00% Castro::computeInitialDt() 2 3.321e-06 4.707e-06 5.166e-06 0.00% Castro::post_regrid() 1 1.769e-06 3.09e-06 4.561e-06 0.00% Castro::FluxRegFineAdd() 10 2.136e-06 2.666e-06 3.273e-06 0.00% Amr::init() 1 1.903e-06 2.244e-06 2.803e-06 0.00% Amr::initialInit() 1 1.253e-06 1.622e-06 2.06e-06 0.00% DistributionMapping::Distribute() 1 1.056e-06 1.259e-06 1.447e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.497 3.497 3.497 100.00% Amr::coarseTimeStep() 10 3.286 3.286 3.286 93.95% Amr::timeStep() 10 3.276 3.276 3.277 93.70% Castro::advance() 10 3.26 3.26 3.26 93.22% Castro::subcycle_advance_ctu() 10 3.178 3.184 3.191 91.23% Castro::do_advance_ctu() 10 3.178 3.184 3.19 91.23% Castro::construct_ctu_hydro_source() 10 2.185 2.271 2.31 66.06% Gravity::make_radial_gravity() 21 0.362 0.3722 0.3861 11.04% Gravity::get_new_grav_vector() 11 0.2358 0.24 0.2423 6.93% Castro::construct_old_gravity() 10 0.2114 0.2192 0.2317 6.63% Gravity::get_old_grav_vector() 10 0.2106 0.2184 0.2309 6.60% Castro::construct_new_gravity() 10 0.2 0.2023 0.2045 5.85% Amr::init() 1 0.1976 0.1977 0.1978 5.66% FillPatchIterator::Initialize 41 0.1655 0.1755 0.1855 5.30% Amr::initialInit() 1 0.1802 0.182 0.1827 5.23% Castro::initialize_do_advance() 10 0.1463 0.1645 0.1763 5.04% Amr::InitializeInit() 1 0.05672 0.1079 0.1408 4.02% Amr::defBaseLevel() 1 0.05672 0.1079 0.1408 4.02% FillPatchSingleLevel 41 0.1231 0.134 0.1406 4.02% Castro::expand_state() 10 0.1052 0.1167 0.1258 3.60% Castro::initData() 1 0.04237 0.09255 0.1256 3.59% Amr::FinalizeInit() 1 0.04133 0.07401 0.1255 3.59% Castro::clean_state() 62 0.1145 0.1194 0.1245 3.56% Castro::estTimeStep() 21 0.02614 0.05769 0.1155 3.30% FabArray::ParallelCopy() 41 0.08143 0.0915 0.09726 2.78% Castro::computeInitialDt() 2 0.00208 0.03484 0.08613 2.46% FabArray::setVal() 143 0.06382 0.07273 0.08239 2.36% Castro::initialize_advance() 10 0.06939 0.07556 0.08191 2.34% Castro::computeTemp() 63 0.06726 0.07085 0.07441 2.13% Castro::do_new_sources() 10 0.05933 0.06507 0.07161 2.05% FabArray::ParallelCopy_finish() 41 0.04223 0.0515 0.05998 1.71% Castro::reset_internal_energy(MultiFab) 63 0.04874 0.05152 0.05413 1.55% Castro::reset_internal_energy(Fab) 1008 0.04845 0.05123 0.05381 1.54% Castro::do_old_sources() 10 0.04477 0.04646 0.04842 1.38% StateDataPhysBCFunct::() 41 0.0379 0.04244 0.04652 1.33% StateData::FillBoundary(geom) 41 0.03776 0.0423 0.04639 1.33% Castro::normalize_species() 62 0.04109 0.04268 0.04435 1.27% FabArray::ParallelCopy_nowait() 41 0.03722 0.03993 0.04208 1.20% Castro::post_init() 1 0.03725 0.03861 0.03925 1.12% Castro::construct_new_source() 50 0.02814 0.03049 0.03377 0.97% Gravity::interpolate_monopole_grav() 21 0.02761 0.02816 0.02932 0.84% Castro::construct_new_gravity_source() 10 0.02181 0.02419 0.02734 0.78% Amr::writePlotFile() 2 0.02427 0.02522 0.02683 0.77% Castro::post_timestep() 10 0.01556 0.01595 0.01652 0.47% VisMF::Write(FabArray) 2 0.01122 0.01223 0.0161 0.46% Castro::apply_source_to_state() 20 0.01422 0.01475 0.01529 0.44% MultiFab::Saxpy() 20 0.01418 0.0147 0.01524 0.44% Castro::Castro() 1 0.008658 0.00999 0.01222 0.35% Castro::check_for_nan() 20 0.009875 0.01062 0.01149 0.33% MultiFab::contains_nan() 20 0.009851 0.01059 0.01147 0.33% Castro::construct_old_source() 50 0.008796 0.0106 0.01116 0.32% Castro::construct_old_gravity_source() 10 0.008743 0.01054 0.01109 0.32% FabArray::setDomainBndry() 41 0.006715 0.009688 0.0109 0.31% Castro::initMFs() 1 0.005395 0.006448 0.008526 0.24% Castro::computeNewDt() 9 0.006874 0.007557 0.008084 0.23% Castro::enforce_min_density() 62 0.006454 0.006805 0.007262 0.21% AmrLevel::AmrLevel(dm) 1 0.004494 0.005186 0.006626 0.19% StateData::define() 4 0.004477 0.005162 0.006603 0.19% Castro::swap_state_time_levels() 10 0.002959 0.004177 0.005517 0.16% Castro::post_regrid() 1 0.001514 0.001926 0.002949 0.08% Castro::buildMetrics() 1 0.00139 0.001632 0.002125 0.06% Castro::finalize_do_advance() 10 0.0004645 0.0008836 0.001085 0.03% Amr::InitAmr() 1 0.0002839 0.0003723 0.0005182 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.429e-05 0.0001741 0.0002699 0.01% DistributionMapping::LeastUsedCPUs() 1 8.745e-06 0.000168 0.0002618 0.01% Castro::enforce_consistent_e() 1 8.122e-05 0.0001012 0.0001354 0.00% FabArrayBase::getCPC() 41 6.924e-05 8.028e-05 0.0001092 0.00% Castro::finalize_advance() 10 5.919e-05 6.381e-05 6.965e-05 0.00% Amr::writeSmallPlotFile() 1 2.52e-05 5.249e-05 6.584e-05 0.00% FabArrayBase::CPC::define() 2 2.558e-05 3.157e-05 4.722e-05 0.00% Castro::enforce_speed_limit() 62 2.397e-05 2.765e-05 3.24e-05 0.00% Gravity::swapTimeLevels() 10 1.073e-05 1.403e-05 1.779e-05 0.00% Amr::initSubcycle() 1 8.362e-06 1.013e-05 1.513e-05 0.00% Castro::create_source_corrector() 10 8.415e-06 1.006e-05 1.181e-05 0.00% Gravity::set_mass_offset() 10 8.704e-06 9.81e-06 1.085e-05 0.00% Castro::FluxRegCrseInit 10 7.856e-06 9.106e-06 1.049e-05 0.00% Castro::retry_advance_ctu() 10 4.91e-06 5.462e-06 6.09e-06 0.00% Castro::FluxRegFineAdd() 10 2.136e-06 2.666e-06 3.273e-06 0.00% DistributionMapping::Distribute() 1 1.056e-06 1.259e-06 1.447e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-4-gef52970b80e3) finalized