MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-4-gef52970b80e3) initialized Starting run at 14:01:12 UTC on 2022-05-05. Successfully read inputs file ... Castro git describe: 22.05-31-g7f6f7a9cf AMReX git describe: 22.05-4-gef52970b8 Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013214126 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.345429266 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344346952 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.323172293 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.323622239 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.323982867 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345844135 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.303714055 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.298841078 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30025275 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.299539793 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009503815 seconds Ending run at 14:01:16 UTC on 2022-05-05. Run time = 3.452963128 Run time without initialization = 3.222217985 Average number of zones advanced per microsecond: 0.814 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.452 ... 3.453 ... 3.453 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2119 2.2747 2.3285 67.43% Gravity::make_radial_gravity() 21 0.3441 0.3564 0.3715 10.76% Castro::initData() 1 0.03889 0.08759 0.1542 4.46% Castro::do_advance_ctu() 10 0.0305 0.08482 0.1468 4.25% Castro::estTimeStep() 21 0.02484 0.09329 0.1395 4.04% FabArray::ParallelCopy_finish() 41 0.03123 0.04353 0.07701 2.23% FabArray::setVal() 143 0.05979 0.06935 0.07626 2.21% Castro::reset_internal_energy(Fab) 1008 0.0481 0.04978 0.05182 1.50% StateData::FillBoundary(geom) 41 0.03849 0.04157 0.04638 1.34% Castro::normalize_species() 62 0.04072 0.0423 0.04394 1.27% FabArray::ParallelCopy_nowait() 41 0.03333 0.03906 0.04035 1.17% FillPatchIterator::Initialize 41 0.02469 0.02955 0.03248 0.94% Gravity::interpolate_monopole_grav() 21 0.02757 0.02796 0.02853 0.83% Castro::construct_new_gravity_source() 10 0.02005 0.02269 0.02439 0.71% Castro::computeTemp() 63 0.01796 0.0193 0.02186 0.63% Castro::expand_state() 10 0.01125 0.0178 0.01973 0.57% Castro::initialize_do_advance() 10 0.0107 0.01563 0.01707 0.49% MultiFab::Saxpy() 20 0.01227 0.01422 0.01534 0.44% MultiFab::contains_nan() 20 0.01013 0.0118 0.01521 0.44% VisMF::Write(FabArray) 2 0.01179 0.01241 0.01495 0.43% Castro::initialize_advance() 10 0.008477 0.0114 0.01357 0.39% Gravity::get_new_grav_vector() 11 0.009923 0.01086 0.01266 0.37% Gravity::get_old_grav_vector() 10 0.006919 0.009018 0.01213 0.35% Castro::construct_old_gravity_source() 10 0.00706 0.0103 0.01197 0.35% Amr::writePlotFile() 2 0.008007 0.01076 0.01157 0.33% FabArray::setDomainBndry() 41 0.006894 0.009161 0.01066 0.31% Castro::initMFs() 1 0.005366 0.006348 0.008525 0.25% Castro::enforce_min_density() 62 0.006332 0.006601 0.006925 0.20% Castro::construct_new_source() 50 0.005728 0.006372 0.006758 0.20% StateData::define() 4 0.004434 0.00509 0.006362 0.18% Castro::swap_state_time_levels() 10 0.001899 0.003589 0.004147 0.12% main() 1 0.003516 0.003782 0.004129 0.12% Castro::buildMetrics() 1 0.001262 0.001459 0.001836 0.05% Amr::coarseTimeStep() 10 0.0003223 0.0007456 0.001352 0.04% Castro::finalize_do_advance() 10 0.0004608 0.0008803 0.001023 0.03% Amr::InitAmr() 1 0.0002724 0.0003479 0.0005957 0.02% Amr::timeStep() 10 0.0001686 0.0002308 0.0004115 0.01% DistributionMapping::LeastUsedCPUs() 1 1.145e-05 0.0002915 0.0003721 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002836 0.0002971 0.0003298 0.01% Castro::clean_state() 62 0.0001445 0.0001556 0.0001693 0.00% StateDataPhysBCFunct::() 41 0.0001196 0.0001336 0.0001487 0.00% Castro::enforce_consistent_e() 1 7.72e-05 9.771e-05 0.0001406 0.00% Castro::Castro() 1 5.575e-05 7.026e-05 9.84e-05 0.00% Castro::construct_old_gravity() 10 4.034e-05 5.315e-05 9.571e-05 0.00% FabArray::ParallelCopy() 41 5.177e-05 6.13e-05 8.171e-05 0.00% Castro::construct_old_source() 50 4.383e-05 6.411e-05 7.869e-05 0.00% Castro::do_new_sources() 10 4.548e-05 5.6e-05 7.197e-05 0.00% Amr::writeSmallPlotFile() 1 2.585e-05 5.306e-05 7.138e-05 0.00% FillPatchSingleLevel 41 5.547e-05 6.451e-05 6.794e-05 0.00% Amr::FinalizeInit() 1 4.171e-06 1.269e-05 6.772e-05 0.00% Castro::do_old_sources() 10 4.087e-05 5.491e-05 6.634e-05 0.00% FabArrayBase::getCPC() 41 4.083e-05 5.076e-05 5.808e-05 0.00% Castro::finalize_advance() 10 4.905e-05 5.055e-05 5.372e-05 0.00% Castro::construct_new_gravity() 10 3.888e-05 4.362e-05 5.291e-05 0.00% Castro::subcycle_advance_ctu() 10 4.181e-05 4.828e-05 5.264e-05 0.00% Castro::apply_source_to_state() 20 3.414e-05 4.526e-05 5.131e-05 0.00% Castro::advance() 10 3.319e-05 3.802e-05 4.275e-05 0.00% Amr::defBaseLevel() 1 2.735e-05 3.311e-05 4.105e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.737e-05 2.529e-05 3.699e-05 0.00% Castro::enforce_speed_limit() 62 2.381e-05 2.65e-05 3.072e-05 0.00% FabArrayBase::CPC::define() 2 2.164e-05 2.484e-05 2.882e-05 0.00% Castro::create_source_corrector() 10 8.238e-06 1.186e-05 2.647e-05 0.00% Castro::check_for_nan() 20 1.796e-05 2.159e-05 2.4e-05 0.00% Amr::initSubcycle() 1 8.83e-06 1.062e-05 1.511e-05 0.00% Gravity::swapTimeLevels() 10 1.083e-05 1.26e-05 1.452e-05 0.00% Castro::FluxRegCrseInit 10 7.932e-06 9.706e-06 1.258e-05 0.00% Castro::post_init() 1 2.744e-06 5.032e-06 1.161e-05 0.00% Castro::post_timestep() 10 8.6e-06 9.994e-06 1.131e-05 0.00% Gravity::set_mass_offset() 10 8.02e-06 9.63e-06 1.079e-05 0.00% Castro::computeNewDt() 9 7.906e-06 8.566e-06 9.627e-06 0.00% Amr::InitializeInit() 1 2.264e-06 3.494e-06 8.464e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.219e-06 5.202e-06 6.59e-06 0.00% Castro::retry_advance_ctu() 10 4.615e-06 5.478e-06 5.975e-06 0.00% Castro::computeInitialDt() 2 3.204e-06 3.932e-06 4.633e-06 0.00% Castro::post_regrid() 1 1.867e-06 3.103e-06 4.243e-06 0.00% Castro::FluxRegFineAdd() 10 2.312e-06 2.873e-06 3.482e-06 0.00% Amr::init() 1 1.758e-06 2.319e-06 2.654e-06 0.00% Amr::initialInit() 1 1.131e-06 1.558e-06 2.082e-06 0.00% DistributionMapping::Distribute() 1 1.105e-06 1.321e-06 1.505e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.452 3.453 3.453 100.00% Amr::coarseTimeStep() 10 3.209 3.209 3.209 92.92% Amr::timeStep() 10 3.199 3.2 3.2 92.68% Castro::advance() 10 3.183 3.184 3.184 92.20% Castro::subcycle_advance_ctu() 10 3.107 3.111 3.121 90.39% Castro::do_advance_ctu() 10 3.107 3.111 3.121 90.38% Castro::construct_ctu_hydro_source() 10 2.212 2.275 2.329 67.43% Gravity::make_radial_gravity() 21 0.3441 0.3564 0.3715 10.76% Gravity::get_new_grav_vector() 11 0.2284 0.2298 0.2315 6.70% Amr::init() 1 0.23 0.2303 0.2303 6.67% Castro::construct_old_gravity() 10 0.2007 0.2109 0.2251 6.52% Gravity::get_old_grav_vector() 10 0.1996 0.21 0.2245 6.50% Amr::initialInit() 1 0.2165 0.2167 0.2169 6.28% Castro::construct_new_gravity() 10 0.1948 0.1952 0.1962 5.68% FillPatchIterator::Initialize 41 0.153 0.1632 0.1808 5.23% Amr::InitializeInit() 1 0.0573 0.1073 0.178 5.16% Amr::defBaseLevel() 1 0.0573 0.1073 0.178 5.16% Castro::initData() 1 0.04247 0.09181 0.1593 4.61% Amr::FinalizeInit() 1 0.03848 0.1094 0.1593 4.61% Castro::initialize_do_advance() 10 0.1501 0.1529 0.1548 4.48% FillPatchSingleLevel 41 0.1183 0.1245 0.1492 4.32% Castro::estTimeStep() 21 0.02484 0.09329 0.1395 4.04% Castro::computeInitialDt() 2 0.002022 0.07292 0.123 3.56% Castro::clean_state() 62 0.1138 0.1174 0.1208 3.50% FabArray::ParallelCopy() 41 0.07172 0.08273 0.1105 3.20% Castro::expand_state() 10 0.1032 0.1063 0.1099 3.18% FabArray::ParallelCopy_finish() 41 0.03123 0.04353 0.07701 2.23% FabArray::setVal() 143 0.05979 0.06935 0.07626 2.21% Castro::initialize_advance() 10 0.062 0.07244 0.07618 2.21% Castro::computeTemp() 63 0.06654 0.06938 0.07204 2.09% Castro::do_new_sources() 10 0.05795 0.06173 0.06605 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04839 0.05008 0.05212 1.51% Castro::do_old_sources() 10 0.03948 0.04629 0.05189 1.50% Castro::reset_internal_energy(Fab) 1008 0.0481 0.04978 0.05182 1.50% StateDataPhysBCFunct::() 41 0.03863 0.0417 0.04652 1.35% StateData::FillBoundary(geom) 41 0.03849 0.04157 0.04638 1.34% Castro::normalize_species() 62 0.04072 0.0423 0.04394 1.27% FabArray::ParallelCopy_nowait() 41 0.03342 0.03914 0.04043 1.17% Castro::post_init() 1 0.03447 0.03547 0.03591 1.04% Castro::construct_new_source() 50 0.02578 0.02906 0.03104 0.90% Gravity::interpolate_monopole_grav() 21 0.02757 0.02796 0.02853 0.83% Castro::construct_new_gravity_source() 10 0.02005 0.02269 0.02439 0.71% Amr::writePlotFile() 2 0.02295 0.02317 0.02335 0.68% Castro::post_timestep() 10 0.01538 0.01582 0.01639 0.47% Castro::apply_source_to_state() 20 0.01232 0.01427 0.01539 0.45% MultiFab::Saxpy() 20 0.01227 0.01422 0.01534 0.44% Castro::check_for_nan() 20 0.01014 0.01182 0.01524 0.44% MultiFab::contains_nan() 20 0.01013 0.0118 0.01521 0.44% VisMF::Write(FabArray) 2 0.01179 0.01241 0.01495 0.43% Castro::Castro() 1 0.008735 0.01001 0.01215 0.35% Castro::construct_old_source() 50 0.007104 0.01036 0.01204 0.35% Castro::construct_old_gravity_source() 10 0.00706 0.0103 0.01197 0.35% FabArray::setDomainBndry() 41 0.006894 0.009161 0.01066 0.31% Castro::initMFs() 1 0.005366 0.006348 0.008525 0.25% Castro::computeNewDt() 9 0.00685 0.007349 0.00795 0.23% Castro::enforce_min_density() 62 0.006332 0.006601 0.006925 0.20% AmrLevel::AmrLevel(dm) 1 0.00446 0.005116 0.006393 0.19% StateData::define() 4 0.004434 0.00509 0.006362 0.18% Castro::swap_state_time_levels() 10 0.001899 0.003589 0.004147 0.12% Castro::post_regrid() 1 0.001586 0.001942 0.002967 0.09% Castro::buildMetrics() 1 0.001384 0.00161 0.002053 0.06% Castro::finalize_do_advance() 10 0.0004608 0.0008803 0.001023 0.03% Amr::InitAmr() 1 0.0002816 0.0003586 0.0006108 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.734e-05 0.000298 0.00038 0.01% DistributionMapping::LeastUsedCPUs() 1 1.145e-05 0.0002915 0.0003721 0.01% Castro::enforce_consistent_e() 1 7.72e-05 9.771e-05 0.0001406 0.00% FabArrayBase::getCPC() 41 6.512e-05 7.559e-05 8.513e-05 0.00% Amr::writeSmallPlotFile() 1 2.585e-05 5.306e-05 7.138e-05 0.00% Castro::finalize_advance() 10 6.051e-05 6.313e-05 6.615e-05 0.00% Castro::enforce_speed_limit() 62 2.381e-05 2.65e-05 3.072e-05 0.00% FabArrayBase::CPC::define() 2 2.164e-05 2.484e-05 2.882e-05 0.00% Castro::create_source_corrector() 10 8.238e-06 1.186e-05 2.647e-05 0.00% Amr::initSubcycle() 1 8.83e-06 1.062e-05 1.511e-05 0.00% Gravity::swapTimeLevels() 10 1.083e-05 1.26e-05 1.452e-05 0.00% Castro::FluxRegCrseInit 10 7.932e-06 9.706e-06 1.258e-05 0.00% Gravity::set_mass_offset() 10 8.02e-06 9.63e-06 1.079e-05 0.00% Castro::retry_advance_ctu() 10 4.615e-06 5.478e-06 5.975e-06 0.00% Castro::FluxRegFineAdd() 10 2.312e-06 2.873e-06 3.482e-06 0.00% DistributionMapping::Distribute() 1 1.105e-06 1.321e-06 1.505e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-4-gef52970b80e3) finalized