MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-4-gef52970b80e3) initialized Starting run at 05:37:53 UTC on 2022-05-06. Successfully read inputs file ... Castro git describe: 22.05-10-g5caf4517f AMReX git describe: 22.05-4-gef52970b8 Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012825319 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.341704415 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336025788 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.32001951 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.317701691 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.320007034 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.350001032 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.305996613 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.299248942 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.300395465 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.299721054 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.039974462 seconds Ending run at 05:37:56 UTC on 2022-05-06. Run time = 3.411413223 Run time without initialization = 3.234160005 Average number of zones advanced per microsecond: 0.811 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.411 ... 3.411 ... 3.411 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2040 2.2500 2.2995 67.40% Gravity::make_radial_gravity() 21 0.3278 0.3411 0.3603 10.56% Castro::do_advance_ctu() 10 0.03758 0.08962 0.1355 3.97% Castro::initData() 1 0.0386 0.07775 0.1174 3.44% Castro::estTimeStep() 21 0.0224 0.06379 0.1088 3.19% FabArray::ParallelCopy_finish() 41 0.03268 0.04233 0.07857 2.30% FabArray::setVal() 143 0.06058 0.07016 0.07536 2.21% Castro::reset_internal_energy(Fab) 1008 0.04779 0.04977 0.05203 1.53% StateData::FillBoundary(geom) 41 0.03903 0.04176 0.04627 1.36% FabArray::ParallelCopy_nowait() 41 0.03456 0.04066 0.04343 1.27% Castro::normalize_species() 62 0.04111 0.04174 0.04253 1.25% Amr::writePlotFile() 2 0.03837 0.04063 0.04164 1.22% FillPatchIterator::Initialize 41 0.02269 0.03093 0.03384 0.99% Gravity::interpolate_monopole_grav() 21 0.02771 0.02814 0.02875 0.84% Castro::construct_new_gravity_source() 10 0.02057 0.02355 0.02606 0.76% Castro::expand_state() 10 0.01164 0.01821 0.02078 0.61% Castro::computeTemp() 63 0.0178 0.01874 0.01983 0.58% Castro::initialize_do_advance() 10 0.01001 0.01613 0.01805 0.53% MultiFab::Saxpy() 20 0.01314 0.01484 0.01601 0.47% VisMF::Write(FabArray) 2 0.01142 0.0125 0.01464 0.43% Castro::initialize_advance() 10 0.008008 0.01146 0.01387 0.41% Gravity::get_new_grav_vector() 11 0.00933 0.01106 0.01296 0.38% MultiFab::contains_nan() 20 0.01013 0.01108 0.01221 0.36% Castro::construct_old_gravity_source() 10 0.007266 0.01099 0.01186 0.35% FabArray::setDomainBndry() 41 0.006919 0.01021 0.01175 0.34% Gravity::get_old_grav_vector() 10 0.006666 0.00915 0.0103 0.30% Castro::construct_new_source() 50 0.005805 0.006474 0.00684 0.20% Castro::initMFs() 1 0.005133 0.005454 0.006794 0.20% Castro::enforce_min_density() 62 0.005832 0.006223 0.006593 0.19% StateData::define() 4 0.004319 0.00445 0.00485 0.14% main() 1 0.003339 0.003625 0.003914 0.11% Castro::swap_state_time_levels() 10 0.002407 0.003438 0.003739 0.11% Castro::buildMetrics() 1 0.001217 0.001269 0.001392 0.04% Amr::coarseTimeStep() 10 0.0003842 0.0006779 0.001363 0.04% Castro::finalize_do_advance() 10 0.0004649 0.0008401 0.0009982 0.03% Amr::timeStep() 10 0.0001577 0.0002193 0.0004845 0.01% Amr::InitAmr() 1 0.0002497 0.0002822 0.0004126 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002846 0.0002987 0.0003273 0.01% Castro::clean_state() 62 0.0001385 0.0001676 0.0001912 0.01% DistributionMapping::LeastUsedCPUs() 1 6.86e-06 0.0001482 0.0001765 0.01% StateDataPhysBCFunct::() 41 0.0001218 0.0001383 0.0001686 0.00% Castro::Castro() 1 4.992e-05 6.772e-05 0.000103 0.00% Castro::construct_old_source() 50 5.978e-05 7.951e-05 9.635e-05 0.00% Castro::enforce_consistent_e() 1 8.034e-05 8.539e-05 9.594e-05 0.00% FillPatchSingleLevel 41 5.62e-05 6.789e-05 7.999e-05 0.00% Castro::do_old_sources() 10 6.186e-05 6.758e-05 7.839e-05 0.00% FabArray::ParallelCopy() 41 5.887e-05 6.529e-05 7.416e-05 0.00% Castro::do_new_sources() 10 5.914e-05 6.65e-05 7.266e-05 0.00% Amr::writeSmallPlotFile() 1 3.002e-05 5.247e-05 7.182e-05 0.00% FabArrayBase::getCPC() 41 5.064e-05 6.114e-05 7.08e-05 0.00% Castro::subcycle_advance_ctu() 10 4.094e-05 5.539e-05 6.786e-05 0.00% Amr::FinalizeInit() 1 3.901e-06 1.197e-05 6.304e-05 0.00% Castro::apply_source_to_state() 20 4.198e-05 5.282e-05 6.097e-05 0.00% Castro::construct_old_gravity() 10 4.838e-05 5.434e-05 6.025e-05 0.00% Castro::construct_new_gravity() 10 3.475e-05 4.523e-05 5.641e-05 0.00% Castro::finalize_advance() 10 4.593e-05 5.027e-05 5.561e-05 0.00% Castro::advance() 10 3.868e-05 4.254e-05 4.503e-05 0.00% Amr::defBaseLevel() 1 2.241e-05 2.965e-05 4.041e-05 0.00% Castro::enforce_speed_limit() 62 2.655e-05 3.062e-05 3.9e-05 0.00% FabArrayBase::CPC::define() 2 2.234e-05 2.55e-05 3.317e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.401e-05 2.122e-05 2.979e-05 0.00% Castro::check_for_nan() 20 1.929e-05 2.273e-05 2.5e-05 0.00% Gravity::swapTimeLevels() 10 9.561e-06 1.209e-05 1.402e-05 0.00% Castro::FluxRegCrseInit 10 7.486e-06 9.481e-06 1.267e-05 0.00% Castro::post_init() 1 7.947e-06 9.432e-06 1.129e-05 0.00% Castro::create_source_corrector() 10 8.031e-06 9.85e-06 1.124e-05 0.00% Castro::post_timestep() 10 8.707e-06 1.004e-05 1.12e-05 0.00% Gravity::set_mass_offset() 10 8.045e-06 9.753e-06 1.095e-05 0.00% Amr::initSubcycle() 1 7.939e-06 8.534e-06 9.523e-06 0.00% Castro::computeNewDt() 9 7.381e-06 7.983e-06 8.913e-06 0.00% Amr::InitializeInit() 1 2.009e-06 2.776e-06 6.924e-06 0.00% Castro::retry_advance_ctu() 10 4.395e-06 5.352e-06 5.827e-06 0.00% Castro::post_regrid() 1 1.892e-06 3.676e-06 5.664e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.523e-06 4.031e-06 5.206e-06 0.00% Castro::computeInitialDt() 2 2.851e-06 4.136e-06 4.854e-06 0.00% Castro::FluxRegFineAdd() 10 2.255e-06 2.408e-06 2.577e-06 0.00% Amr::init() 1 1.805e-06 2.062e-06 2.435e-06 0.00% Amr::initialInit() 1 1.15e-06 1.579e-06 1.807e-06 0.00% DistributionMapping::Distribute() 1 8.82e-07 1.023e-06 1.25e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.411 3.411 3.411 100.00% Amr::coarseTimeStep() 10 3.19 3.19 3.19 93.52% Amr::timeStep() 10 3.181 3.181 3.182 93.27% Castro::advance() 10 3.165 3.165 3.166 92.79% Castro::subcycle_advance_ctu() 10 3.089 3.093 3.103 90.96% Castro::do_advance_ctu() 10 3.089 3.093 3.103 90.96% Castro::construct_ctu_hydro_source() 10 2.204 2.25 2.299 67.40% Gravity::make_radial_gravity() 21 0.3278 0.3411 0.3603 10.56% Gravity::get_new_grav_vector() 11 0.2211 0.2228 0.2236 6.55% Castro::construct_old_gravity() 10 0.1934 0.2035 0.2192 6.43% Gravity::get_old_grav_vector() 10 0.1925 0.2028 0.2186 6.41% Castro::construct_new_gravity() 10 0.1982 0.1991 0.1999 5.86% FillPatchIterator::Initialize 41 0.1571 0.1663 0.1832 5.37% Amr::init() 1 0.1767 0.1768 0.1769 5.18% Amr::initialInit() 1 0.1635 0.1638 0.1639 4.80% Castro::initialize_do_advance() 10 0.1493 0.1557 0.1604 4.70% FillPatchSingleLevel 41 0.1162 0.1251 0.1536 4.50% Amr::InitializeInit() 1 0.0566 0.09593 0.1367 4.01% Amr::defBaseLevel() 1 0.0566 0.09593 0.1367 4.01% Castro::initData() 1 0.04276 0.08179 0.1212 3.55% Castro::clean_state() 62 0.1139 0.116 0.1194 3.50% Castro::expand_state() 10 0.1023 0.109 0.1147 3.36% FabArray::ParallelCopy() 41 0.07503 0.08315 0.1133 3.32% Castro::estTimeStep() 21 0.0224 0.06379 0.1088 3.19% Amr::FinalizeInit() 1 0.02682 0.06783 0.1072 3.14% Castro::computeInitialDt() 2 0.001705 0.04245 0.0818 2.40% FabArray::ParallelCopy_finish() 41 0.03268 0.04233 0.07857 2.30% Castro::initialize_advance() 10 0.06181 0.07235 0.07612 2.23% FabArray::setVal() 143 0.06058 0.07016 0.07536 2.21% Castro::computeTemp() 63 0.0659 0.06881 0.07215 2.12% Castro::do_new_sources() 10 0.05798 0.06293 0.0681 2.00% Amr::writePlotFile() 2 0.05301 0.05312 0.05338 1.56% Castro::reset_internal_energy(MultiFab) 63 0.0481 0.05007 0.05232 1.53% Castro::reset_internal_energy(Fab) 1008 0.04779 0.04977 0.05203 1.53% Castro::do_old_sources() 10 0.04074 0.04702 0.04872 1.43% StateDataPhysBCFunct::() 41 0.03918 0.0419 0.04642 1.36% StateData::FillBoundary(geom) 41 0.03903 0.04176 0.04627 1.36% FabArray::ParallelCopy_nowait() 41 0.03465 0.04075 0.04351 1.28% Castro::normalize_species() 62 0.04111 0.04174 0.04253 1.25% Castro::construct_new_source() 50 0.02637 0.03002 0.03277 0.96% Gravity::interpolate_monopole_grav() 21 0.02771 0.02814 0.02875 0.84% Castro::construct_new_gravity_source() 10 0.02057 0.02355 0.02606 0.76% Castro::post_init() 1 0.02439 0.02463 0.02476 0.73% Castro::post_timestep() 10 0.01528 0.01568 0.01619 0.47% Castro::apply_source_to_state() 20 0.01319 0.01489 0.01607 0.47% MultiFab::Saxpy() 20 0.01314 0.01484 0.01601 0.47% VisMF::Write(FabArray) 2 0.01142 0.0125 0.01464 0.43% Castro::check_for_nan() 20 0.01015 0.0111 0.01223 0.36% MultiFab::contains_nan() 20 0.01013 0.01108 0.01221 0.36% Castro::construct_old_source() 50 0.007326 0.01107 0.01195 0.35% Castro::construct_old_gravity_source() 10 0.007266 0.01099 0.01186 0.35% FabArray::setDomainBndry() 41 0.006919 0.01021 0.01175 0.34% Castro::Castro() 1 0.009105 0.00949 0.01045 0.31% Castro::computeNewDt() 9 0.006745 0.007434 0.008229 0.24% Castro::initMFs() 1 0.005133 0.005454 0.006794 0.20% Castro::enforce_min_density() 62 0.005832 0.006223 0.006593 0.19% AmrLevel::AmrLevel(dm) 1 0.004339 0.004471 0.00488 0.14% StateData::define() 4 0.004319 0.00445 0.00485 0.14% Castro::swap_state_time_levels() 10 0.002407 0.003438 0.003739 0.11% Castro::post_regrid() 1 0.00159 0.001649 0.001722 0.05% Castro::buildMetrics() 1 0.001342 0.001406 0.001548 0.05% Castro::finalize_do_advance() 10 0.0004649 0.0008401 0.0009982 0.03% Amr::InitAmr() 1 0.0002576 0.0002907 0.000422 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.215e-05 0.0001533 0.0001828 0.01% DistributionMapping::LeastUsedCPUs() 1 6.86e-06 0.0001482 0.0001765 0.01% FabArrayBase::getCPC() 41 7.354e-05 8.664e-05 9.61e-05 0.00% Castro::enforce_consistent_e() 1 8.034e-05 8.539e-05 9.594e-05 0.00% Amr::writeSmallPlotFile() 1 3.002e-05 5.247e-05 7.182e-05 0.00% Castro::finalize_advance() 10 5.895e-05 6.215e-05 6.741e-05 0.00% Castro::enforce_speed_limit() 62 2.655e-05 3.062e-05 3.9e-05 0.00% FabArrayBase::CPC::define() 2 2.234e-05 2.55e-05 3.317e-05 0.00% Gravity::swapTimeLevels() 10 9.561e-06 1.209e-05 1.402e-05 0.00% Castro::FluxRegCrseInit 10 7.486e-06 9.481e-06 1.267e-05 0.00% Castro::create_source_corrector() 10 8.031e-06 9.85e-06 1.124e-05 0.00% Gravity::set_mass_offset() 10 8.045e-06 9.753e-06 1.095e-05 0.00% Amr::initSubcycle() 1 7.939e-06 8.534e-06 9.523e-06 0.00% Castro::retry_advance_ctu() 10 4.395e-06 5.352e-06 5.827e-06 0.00% Castro::FluxRegFineAdd() 10 2.255e-06 2.408e-06 2.577e-06 0.00% DistributionMapping::Distribute() 1 8.82e-07 1.023e-06 1.25e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-4-gef52970b80e3) finalized