MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-5-g3ca867b8cce8) initialized Starting run at 19:26:05 UTC on 2022-05-08. Successfully read inputs file ... Castro git describe: 22.05-12-g4ad83d313 AMReX git describe: 22.05-5-g3ca867b8c Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01495988 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.345258429 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347470101 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334423959 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326518515 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.324233172 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.348059736 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.308790888 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.341327674 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313233528 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313625709 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009998385 seconds Ending run at 19:26:09 UTC on 2022-05-08. Run time = 3.538075233 Run time without initialization = 3.316129413 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.538 ... 3.538 ... 3.538 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2189 2.2876 2.3583 66.65% Gravity::make_radial_gravity() 21 0.3485 0.3591 0.3673 10.38% Castro::do_advance_ctu() 10 0.05421 0.1283 0.2007 5.67% Castro::initData() 1 0.03842 0.08974 0.1541 4.36% Castro::estTimeStep() 21 0.02799 0.09251 0.1475 4.17% FabArray::ParallelCopy_finish() 41 0.03401 0.05689 0.08814 2.49% FabArray::setVal() 143 0.06601 0.07424 0.08505 2.40% Castro::reset_internal_energy(Fab) 1008 0.04831 0.04967 0.05128 1.45% StateData::FillBoundary(geom) 41 0.03727 0.04129 0.04503 1.27% FabArray::ParallelCopy_nowait() 41 0.03453 0.04063 0.04358 1.23% Castro::normalize_species() 62 0.04106 0.04167 0.04224 1.19% FillPatchIterator::Initialize 41 0.02358 0.03111 0.03584 1.01% Gravity::interpolate_monopole_grav() 21 0.02733 0.02767 0.02805 0.79% Castro::construct_new_gravity_source() 10 0.0221 0.02347 0.02476 0.70% Castro::computeTemp() 63 0.01764 0.01927 0.02252 0.64% Castro::initialize_do_advance() 10 0.01103 0.0173 0.02036 0.58% Castro::expand_state() 10 0.01205 0.01671 0.01879 0.53% VisMF::Write(FabArray) 2 0.01144 0.01275 0.0164 0.46% MultiFab::Saxpy() 20 0.01248 0.01385 0.01476 0.42% Castro::initialize_advance() 10 0.0107 0.0126 0.01453 0.41% Amr::writePlotFile() 2 0.008773 0.01265 0.01407 0.40% Gravity::get_new_grav_vector() 11 0.01029 0.01116 0.01255 0.35% MultiFab::contains_nan() 20 0.0103 0.01122 0.01224 0.35% Castro::construct_old_gravity_source() 10 0.007105 0.01006 0.01113 0.31% FabArray::setDomainBndry() 41 0.006692 0.009796 0.0109 0.31% Gravity::get_old_grav_vector() 10 0.007463 0.009313 0.01078 0.30% Castro::initMFs() 1 0.005237 0.006179 0.008372 0.24% Castro::construct_new_source() 50 0.005916 0.006391 0.006619 0.19% Castro::enforce_min_density() 62 0.005731 0.006041 0.006317 0.18% StateData::define() 4 0.004319 0.004917 0.006314 0.18% main() 1 0.003806 0.004185 0.00439 0.12% Castro::swap_state_time_levels() 10 0.002828 0.003736 0.004227 0.12% Castro::buildMetrics() 1 0.001232 0.001401 0.001814 0.05% Amr::coarseTimeStep() 10 0.0003597 0.0007667 0.001262 0.04% Castro::finalize_do_advance() 10 0.00046 0.001038 0.001195 0.03% Amr::InitAmr() 1 0.0002754 0.0003442 0.0004664 0.01% Amr::timeStep() 10 0.0001636 0.0002269 0.0004383 0.01% DistributionMapping::LeastUsedCPUs() 1 1.019e-05 0.0003178 0.0004346 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002865 0.000312 0.0003869 0.01% Castro::clean_state() 62 0.0001405 0.000152 0.0001647 0.00% StateDataPhysBCFunct::() 41 0.0001057 0.0001249 0.000156 0.00% Castro::enforce_consistent_e() 1 8.227e-05 9.764e-05 0.0001373 0.00% Castro::construct_old_source() 50 4.405e-05 6.703e-05 8.266e-05 0.00% FabArray::ParallelCopy() 41 5.822e-05 6.992e-05 8.055e-05 0.00% Castro::subcycle_advance_ctu() 10 4.301e-05 5.467e-05 7.937e-05 0.00% FillPatchSingleLevel 41 6.231e-05 6.856e-05 7.305e-05 0.00% Castro::advance() 10 3.5e-05 4.716e-05 7.224e-05 0.00% Amr::writeSmallPlotFile() 1 2.529e-05 4.702e-05 7.062e-05 0.00% Castro::do_new_sources() 10 4.647e-05 5.958e-05 6.886e-05 0.00% Amr::FinalizeInit() 1 3.573e-06 1.309e-05 6.723e-05 0.00% Castro::do_old_sources() 10 4.69e-05 5.779e-05 6.574e-05 0.00% Castro::Castro() 1 4.682e-05 5.482e-05 6.434e-05 0.00% Castro::finalize_advance() 10 5.198e-05 5.535e-05 5.82e-05 0.00% FabArrayBase::getCPC() 41 4.024e-05 4.704e-05 5.581e-05 0.00% Castro::construct_new_gravity() 10 3.626e-05 4.314e-05 5.538e-05 0.00% Castro::apply_source_to_state() 20 3.434e-05 4.074e-05 5.361e-05 0.00% Castro::construct_old_gravity() 10 4.027e-05 4.512e-05 5.057e-05 0.00% Amr::defBaseLevel() 1 2.745e-05 3.369e-05 3.938e-05 0.00% FabArrayBase::CPC::define() 2 2.299e-05 2.7e-05 3.322e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.523e-05 2.152e-05 3.119e-05 0.00% Castro::enforce_speed_limit() 62 2.512e-05 2.885e-05 3.107e-05 0.00% Castro::check_for_nan() 20 1.966e-05 2.327e-05 2.687e-05 0.00% Castro::post_init() 1 9.338e-06 1.105e-05 1.579e-05 0.00% Amr::initSubcycle() 1 8.267e-06 1.045e-05 1.503e-05 0.00% Castro::FluxRegCrseInit 10 7.806e-06 1.072e-05 1.464e-05 0.00% Gravity::swapTimeLevels() 10 1.013e-05 1.273e-05 1.437e-05 0.00% Castro::post_timestep() 10 9.517e-06 1.077e-05 1.291e-05 0.00% Gravity::set_mass_offset() 10 8.078e-06 1.019e-05 1.2e-05 0.00% Castro::create_source_corrector() 10 8.312e-06 1.035e-05 1.173e-05 0.00% Castro::retry_advance_ctu() 10 4.835e-06 7.017e-06 1.169e-05 0.00% Castro::computeNewDt() 9 7.861e-06 9.174e-06 1.104e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.154e-06 5.187e-06 6.756e-06 0.00% Amr::InitializeInit() 1 2.225e-06 3.107e-06 6.468e-06 0.00% Castro::post_regrid() 1 1.92e-06 4.168e-06 6.173e-06 0.00% Castro::computeInitialDt() 2 3.718e-06 4.587e-06 5.894e-06 0.00% Amr::initialInit() 1 1.485e-06 2.203e-06 5.813e-06 0.00% Castro::FluxRegFineAdd() 10 2.133e-06 2.572e-06 3.455e-06 0.00% Amr::init() 1 2.047e-06 2.261e-06 2.411e-06 0.00% DistributionMapping::Distribute() 1 9.85e-07 1.193e-06 1.36e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.538 3.538 3.538 100.00% Amr::coarseTimeStep() 10 3.302 3.302 3.302 93.32% Amr::timeStep() 10 3.292 3.292 3.293 93.07% Castro::advance() 10 3.276 3.276 3.277 92.61% Castro::subcycle_advance_ctu() 10 3.188 3.198 3.203 90.54% Castro::do_advance_ctu() 10 3.188 3.198 3.203 90.54% Castro::construct_ctu_hydro_source() 10 2.219 2.288 2.358 66.65% Gravity::make_radial_gravity() 21 0.3485 0.3591 0.3673 10.38% Gravity::get_new_grav_vector() 11 0.2306 0.2316 0.2325 6.57% Amr::init() 1 0.2211 0.2214 0.2215 6.26% Castro::construct_old_gravity() 10 0.2053 0.2141 0.2207 6.24% Gravity::get_old_grav_vector() 10 0.2043 0.2133 0.2201 6.22% Amr::initialInit() 1 0.2059 0.2061 0.2064 5.83% Castro::construct_new_gravity() 10 0.2041 0.2051 0.206 5.82% FillPatchIterator::Initialize 41 0.1619 0.18 0.1943 5.49% Castro::initialize_do_advance() 10 0.1569 0.1675 0.1769 5.00% Amr::InitializeInit() 1 0.05611 0.1089 0.1763 4.98% Amr::defBaseLevel() 1 0.05611 0.1089 0.1763 4.98% FillPatchSingleLevel 41 0.1164 0.1391 0.1641 4.64% Castro::initData() 1 0.04242 0.0939 0.1578 4.46% Amr::FinalizeInit() 1 0.02971 0.09714 0.1498 4.23% Castro::estTimeStep() 21 0.02799 0.09251 0.1475 4.17% Castro::expand_state() 10 0.107 0.12 0.1288 3.64% FabArray::ParallelCopy() 41 0.07679 0.09767 0.1228 3.47% Castro::computeInitialDt() 2 0.00171 0.06921 0.1221 3.45% Castro::clean_state() 62 0.1136 0.1161 0.121 3.42% FabArray::ParallelCopy_finish() 41 0.03401 0.05689 0.08814 2.49% Castro::initialize_advance() 10 0.07305 0.07856 0.08794 2.49% FabArray::setVal() 143 0.06601 0.07424 0.08505 2.40% Castro::computeTemp() 63 0.06641 0.06925 0.07356 2.08% Castro::do_new_sources() 10 0.05986 0.06241 0.066 1.87% Castro::reset_internal_energy(MultiFab) 63 0.04862 0.04998 0.05167 1.46% Castro::reset_internal_energy(Fab) 1008 0.04831 0.04967 0.05128 1.45% Castro::do_old_sources() 10 0.04046 0.04598 0.04866 1.38% StateDataPhysBCFunct::() 41 0.03737 0.04141 0.04516 1.28% StateData::FillBoundary(geom) 41 0.03727 0.04129 0.04503 1.27% FabArray::ParallelCopy_nowait() 41 0.03461 0.0407 0.04365 1.23% Castro::normalize_species() 62 0.04106 0.04167 0.04224 1.19% Castro::construct_new_source() 50 0.02807 0.02986 0.03129 0.88% Gravity::interpolate_monopole_grav() 21 0.02733 0.02767 0.02805 0.79% Castro::post_init() 1 0.02704 0.0273 0.02752 0.78% Amr::writePlotFile() 2 0.02512 0.0254 0.02572 0.73% Castro::construct_new_gravity_source() 10 0.0221 0.02347 0.02476 0.70% VisMF::Write(FabArray) 2 0.01144 0.01275 0.0164 0.46% Castro::post_timestep() 10 0.0154 0.01572 0.01611 0.46% Castro::apply_source_to_state() 20 0.01253 0.01389 0.01481 0.42% MultiFab::Saxpy() 20 0.01248 0.01385 0.01476 0.42% Castro::check_for_nan() 20 0.01032 0.01124 0.01227 0.35% MultiFab::contains_nan() 20 0.0103 0.01122 0.01224 0.35% Castro::Castro() 1 0.008818 0.00973 0.01196 0.34% Castro::construct_old_source() 50 0.007149 0.01012 0.01121 0.32% Castro::construct_old_gravity_source() 10 0.007105 0.01006 0.01113 0.31% FabArray::setDomainBndry() 41 0.006692 0.009796 0.0109 0.31% Castro::computeNewDt() 9 0.006938 0.007601 0.00864 0.24% Castro::initMFs() 1 0.005237 0.006179 0.008372 0.24% AmrLevel::AmrLevel(dm) 1 0.004343 0.004938 0.006335 0.18% Castro::enforce_min_density() 62 0.005731 0.006041 0.006317 0.18% StateData::define() 4 0.004319 0.004917 0.006314 0.18% Castro::swap_state_time_levels() 10 0.002828 0.003736 0.004227 0.12% Castro::buildMetrics() 1 0.00135 0.00155 0.002034 0.06% Castro::post_regrid() 1 0.001508 0.001652 0.001903 0.05% Castro::finalize_do_advance() 10 0.00046 0.001038 0.001195 0.03% Amr::InitAmr() 1 0.0002842 0.0003546 0.0004814 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.556e-05 0.0003242 0.0004423 0.01% DistributionMapping::LeastUsedCPUs() 1 1.019e-05 0.0003178 0.0004346 0.01% Castro::enforce_consistent_e() 1 8.227e-05 9.764e-05 0.0001373 0.00% FabArrayBase::getCPC() 41 6.711e-05 7.405e-05 8.438e-05 0.00% Castro::finalize_advance() 10 6.443e-05 6.865e-05 7.283e-05 0.00% Amr::writeSmallPlotFile() 1 2.529e-05 4.702e-05 7.062e-05 0.00% FabArrayBase::CPC::define() 2 2.299e-05 2.7e-05 3.322e-05 0.00% Castro::enforce_speed_limit() 62 2.512e-05 2.885e-05 3.107e-05 0.00% Amr::initSubcycle() 1 8.267e-06 1.045e-05 1.503e-05 0.00% Castro::FluxRegCrseInit 10 7.806e-06 1.072e-05 1.464e-05 0.00% Gravity::swapTimeLevels() 10 1.013e-05 1.273e-05 1.437e-05 0.00% Gravity::set_mass_offset() 10 8.078e-06 1.019e-05 1.2e-05 0.00% Castro::create_source_corrector() 10 8.312e-06 1.035e-05 1.173e-05 0.00% Castro::retry_advance_ctu() 10 4.835e-06 7.017e-06 1.169e-05 0.00% Castro::FluxRegFineAdd() 10 2.133e-06 2.572e-06 3.455e-06 0.00% DistributionMapping::Distribute() 1 9.85e-07 1.193e-06 1.36e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-5-g3ca867b8cce8) finalized