MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-5-g3ca867b8cce8) initialized Starting run at 05:38:02 UTC on 2022-05-09. Successfully read inputs file ... Castro git describe: 22.05-12-gb79cf4624 AMReX git describe: 22.05-5-g3ca867b8c Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013269111 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.352727784 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.330490887 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.348099535 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328346007 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.327357019 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.349946253 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310579425 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.303841165 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.359459506 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31717293 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009890045 seconds Ending run at 05:38:05 UTC on 2022-05-09. Run time = 3.541855419 Run time without initialization = 3.342025842 Average number of zones advanced per microsecond: 0.784 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.541 ... 3.542 ... 3.542 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1889 2.2984 2.3722 66.98% Gravity::make_radial_gravity() 21 0.3474 0.3549 0.3667 10.35% Castro::do_advance_ctu() 10 0.06957 0.1466 0.2585 7.30% Castro::initData() 1 0.03837 0.08185 0.1361 3.84% Castro::estTimeStep() 21 0.02533 0.07819 0.1209 3.41% FabArray::setVal() 143 0.07108 0.075 0.08013 2.26% FabArray::ParallelCopy_finish() 41 0.03277 0.04839 0.05919 1.67% Castro::reset_internal_energy(Fab) 1008 0.04855 0.0499 0.05127 1.45% StateData::FillBoundary(geom) 41 0.03885 0.04196 0.04553 1.29% FabArray::ParallelCopy_nowait() 41 0.03859 0.04178 0.04469 1.26% Castro::normalize_species() 62 0.04093 0.04197 0.04323 1.22% FillPatchIterator::Initialize 41 0.02441 0.0317 0.03464 0.98% Gravity::interpolate_monopole_grav() 21 0.02748 0.02808 0.02928 0.83% Castro::construct_new_gravity_source() 10 0.02301 0.02426 0.02552 0.72% Castro::expand_state() 10 0.0139 0.01924 0.02044 0.58% Castro::computeTemp() 63 0.01798 0.01879 0.01972 0.56% Castro::initialize_do_advance() 10 0.01448 0.01686 0.01815 0.51% MultiFab::Saxpy() 20 0.01489 0.01585 0.01748 0.49% VisMF::Write(FabArray) 2 0.01154 0.01205 0.01459 0.41% Castro::initialize_advance() 10 0.01077 0.01259 0.0145 0.41% MultiFab::contains_nan() 20 0.01074 0.0119 0.01394 0.39% Castro::construct_old_gravity_source() 10 0.01013 0.01134 0.01292 0.36% Gravity::get_new_grav_vector() 11 0.01035 0.01151 0.01286 0.36% Amr::writePlotFile() 2 0.008785 0.01146 0.01211 0.34% FabArray::setDomainBndry() 41 0.007188 0.01036 0.01164 0.33% Gravity::get_old_grav_vector() 10 0.009021 0.009825 0.01113 0.31% Castro::enforce_min_density() 62 0.005971 0.006387 0.007113 0.20% Castro::construct_new_source() 50 0.006513 0.006699 0.006891 0.19% Castro::initMFs() 1 0.005409 0.005833 0.006281 0.18% StateData::define() 4 0.004364 0.004699 0.004997 0.14% Castro::swap_state_time_levels() 10 0.002939 0.003808 0.004299 0.12% main() 1 0.003355 0.003845 0.004064 0.11% Castro::buildMetrics() 1 0.001227 0.001337 0.001425 0.04% Castro::finalize_do_advance() 10 0.0009531 0.001185 0.001283 0.04% Amr::coarseTimeStep() 10 0.0004116 0.0006778 0.001034 0.03% Amr::timeStep() 10 0.0001563 0.0002185 0.0004986 0.01% Amr::InitAmr() 1 0.0002581 0.0003031 0.0004199 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002875 0.0003106 0.0003589 0.01% StateDataPhysBCFunct::() 41 0.0001223 0.0001418 0.000183 0.01% DistributionMapping::LeastUsedCPUs() 1 7.451e-06 0.0001344 0.0001751 0.00% Castro::clean_state() 62 0.0001482 0.0001613 0.0001723 0.00% Castro::enforce_consistent_e() 1 7.396e-05 8.467e-05 9.969e-05 0.00% Castro::construct_old_source() 50 5.748e-05 7.746e-05 9.019e-05 0.00% FillPatchSingleLevel 41 7.147e-05 7.709e-05 8.873e-05 0.00% FabArray::ParallelCopy() 41 6.193e-05 7.168e-05 8.724e-05 0.00% Amr::FinalizeInit() 1 4.252e-06 1.439e-05 8.06e-05 0.00% Castro::Castro() 1 5.372e-05 6.428e-05 7.971e-05 0.00% Castro::do_old_sources() 10 5.759e-05 6.605e-05 7.616e-05 0.00% Castro::subcycle_advance_ctu() 10 4.235e-05 5.98e-05 7.469e-05 0.00% Castro::do_new_sources() 10 5.877e-05 6.633e-05 7.338e-05 0.00% Amr::writeSmallPlotFile() 1 3.062e-05 5.624e-05 6.93e-05 0.00% Castro::advance() 10 4.017e-05 4.641e-05 6.041e-05 0.00% Castro::construct_old_gravity() 10 4.717e-05 5.18e-05 5.914e-05 0.00% Castro::finalize_advance() 10 4.97e-05 5.371e-05 5.851e-05 0.00% FabArrayBase::getCPC() 41 4.449e-05 5.121e-05 5.828e-05 0.00% Castro::construct_new_gravity() 10 3.996e-05 5.089e-05 5.747e-05 0.00% Castro::apply_source_to_state() 20 4.278e-05 4.717e-05 5.397e-05 0.00% Castro::enforce_speed_limit() 62 2.6e-05 3.064e-05 4.882e-05 0.00% Amr::defBaseLevel() 1 2.657e-05 2.91e-05 3.332e-05 0.00% FabArrayBase::CPC::define() 2 2.253e-05 2.625e-05 3.28e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.554e-05 2.196e-05 2.998e-05 0.00% Castro::check_for_nan() 20 2.058e-05 2.522e-05 2.981e-05 0.00% Gravity::swapTimeLevels() 10 1.216e-05 1.331e-05 1.527e-05 0.00% Castro::post_timestep() 10 9.461e-06 1.083e-05 1.352e-05 0.00% Castro::post_init() 1 8.489e-06 1.013e-05 1.306e-05 0.00% Castro::create_source_corrector() 10 8.636e-06 1.027e-05 1.269e-05 0.00% Gravity::set_mass_offset() 10 8.054e-06 9.921e-06 1.197e-05 0.00% Castro::FluxRegCrseInit 10 7.09e-06 9.194e-06 1.049e-05 0.00% Amr::initSubcycle() 1 8.38e-06 9.41e-06 9.903e-06 0.00% Castro::computeNewDt() 9 7.105e-06 8.262e-06 8.894e-06 0.00% Castro::retry_advance_ctu() 10 4.418e-06 5.554e-06 6.638e-06 0.00% Amr::InitializeInit() 1 2.212e-06 2.803e-06 6.134e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.049e-06 4.504e-06 5.614e-06 0.00% Castro::computeInitialDt() 2 2.976e-06 4.136e-06 4.925e-06 0.00% Castro::post_regrid() 1 2.291e-06 3.245e-06 4.666e-06 0.00% Castro::FluxRegFineAdd() 10 2.059e-06 2.589e-06 3.17e-06 0.00% Amr::init() 1 1.573e-06 2.076e-06 2.985e-06 0.00% Amr::initialInit() 1 1.229e-06 1.604e-06 1.87e-06 0.00% DistributionMapping::Distribute() 1 9.5e-07 1.123e-06 1.404e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.541 3.542 3.542 100.00% Amr::coarseTimeStep() 10 3.328 3.328 3.328 93.96% Amr::timeStep() 10 3.319 3.319 3.319 93.72% Castro::advance() 10 3.303 3.303 3.303 93.26% Castro::subcycle_advance_ctu() 10 3.224 3.226 3.228 91.14% Castro::do_advance_ctu() 10 3.224 3.226 3.228 91.13% Castro::construct_ctu_hydro_source() 10 2.189 2.298 2.372 66.98% Gravity::make_radial_gravity() 21 0.3474 0.3549 0.3667 10.35% Castro::construct_old_gravity() 10 0.2136 0.2193 0.2303 6.50% Gravity::get_old_grav_vector() 10 0.2126 0.2185 0.2295 6.48% Gravity::get_new_grav_vector() 11 0.2242 0.2262 0.2278 6.43% Castro::construct_new_gravity() 10 0.1989 0.1999 0.2008 5.67% Amr::init() 1 0.1993 0.1994 0.1994 5.63% FillPatchIterator::Initialize 41 0.1609 0.1746 0.1862 5.26% Amr::initialInit() 1 0.1856 0.1858 0.186 5.25% Castro::initialize_do_advance() 10 0.1485 0.1586 0.1664 4.70% Amr::InitializeInit() 1 0.05592 0.1004 0.1559 4.40% Amr::defBaseLevel() 1 0.05592 0.1004 0.1559 4.40% FillPatchSingleLevel 41 0.1162 0.1325 0.1417 4.00% Castro::initData() 1 0.04245 0.0858 0.1403 3.96% Amr::FinalizeInit() 1 0.03008 0.08547 0.1299 3.67% Castro::estTimeStep() 21 0.02533 0.07819 0.1209 3.41% Castro::clean_state() 62 0.1141 0.1166 0.1187 3.35% Castro::expand_state() 10 0.1032 0.1108 0.1169 3.30% Castro::computeInitialDt() 2 0.00197 0.05751 0.102 2.88% FabArray::ParallelCopy() 41 0.07567 0.09032 0.09989 2.82% FabArray::setVal() 143 0.07108 0.075 0.08013 2.26% Castro::initialize_advance() 10 0.07467 0.07644 0.07862 2.22% Castro::computeTemp() 63 0.06741 0.069 0.07131 2.01% Castro::do_new_sources() 10 0.06158 0.06488 0.06781 1.91% FabArray::ParallelCopy_finish() 41 0.03277 0.04839 0.05919 1.67% Castro::do_old_sources() 10 0.04637 0.04988 0.05482 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04885 0.05021 0.05159 1.46% Castro::reset_internal_energy(Fab) 1008 0.04855 0.0499 0.05127 1.45% StateDataPhysBCFunct::() 41 0.03898 0.0421 0.04567 1.29% StateData::FillBoundary(geom) 41 0.03885 0.04196 0.04553 1.29% FabArray::ParallelCopy_nowait() 41 0.03868 0.04186 0.04476 1.26% Castro::normalize_species() 62 0.04093 0.04197 0.04323 1.22% Castro::construct_new_source() 50 0.02952 0.03096 0.03225 0.91% Gravity::interpolate_monopole_grav() 21 0.02748 0.02808 0.02928 0.83% Castro::post_init() 1 0.02722 0.02737 0.02764 0.78% Castro::construct_new_gravity_source() 10 0.02301 0.02426 0.02552 0.72% Amr::writePlotFile() 2 0.02331 0.02351 0.02373 0.67% Castro::apply_source_to_state() 20 0.01494 0.0159 0.01752 0.49% MultiFab::Saxpy() 20 0.01489 0.01585 0.01748 0.49% Castro::post_timestep() 10 0.01547 0.01574 0.01606 0.45% VisMF::Write(FabArray) 2 0.01154 0.01205 0.01459 0.41% Castro::check_for_nan() 20 0.01076 0.01192 0.01396 0.39% MultiFab::contains_nan() 20 0.01074 0.0119 0.01394 0.39% Castro::construct_old_source() 50 0.0102 0.01142 0.013 0.37% Castro::construct_old_gravity_source() 10 0.01013 0.01134 0.01292 0.36% FabArray::setDomainBndry() 41 0.007188 0.01036 0.01164 0.33% Castro::Castro() 1 0.008772 0.009667 0.01037 0.29% Castro::computeNewDt() 9 0.006965 0.007416 0.007767 0.22% Castro::enforce_min_density() 62 0.005971 0.006387 0.007113 0.20% Castro::initMFs() 1 0.005409 0.005833 0.006281 0.18% AmrLevel::AmrLevel(dm) 1 0.004384 0.004721 0.005027 0.14% StateData::define() 4 0.004364 0.004699 0.004997 0.14% Castro::swap_state_time_levels() 10 0.002939 0.003808 0.004299 0.12% Castro::post_regrid() 1 0.00151 0.001604 0.001889 0.05% Castro::buildMetrics() 1 0.001347 0.001472 0.001578 0.04% Castro::finalize_do_advance() 10 0.0009531 0.001185 0.001283 0.04% Amr::InitAmr() 1 0.0002668 0.0003126 0.0004296 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.276e-05 0.0001401 0.0001811 0.01% DistributionMapping::LeastUsedCPUs() 1 7.451e-06 0.0001344 0.0001751 0.00% Castro::enforce_consistent_e() 1 7.396e-05 8.467e-05 9.969e-05 0.00% FabArrayBase::getCPC() 41 6.87e-05 7.745e-05 8.539e-05 0.00% Amr::writeSmallPlotFile() 1 3.062e-05 5.624e-05 6.93e-05 0.00% Castro::finalize_advance() 10 6.155e-05 6.55e-05 6.913e-05 0.00% Castro::enforce_speed_limit() 62 2.6e-05 3.064e-05 4.882e-05 0.00% FabArrayBase::CPC::define() 2 2.253e-05 2.625e-05 3.28e-05 0.00% Gravity::swapTimeLevels() 10 1.216e-05 1.331e-05 1.527e-05 0.00% Castro::create_source_corrector() 10 8.636e-06 1.027e-05 1.269e-05 0.00% Gravity::set_mass_offset() 10 8.054e-06 9.921e-06 1.197e-05 0.00% Castro::FluxRegCrseInit 10 7.09e-06 9.194e-06 1.049e-05 0.00% Amr::initSubcycle() 1 8.38e-06 9.41e-06 9.903e-06 0.00% Castro::retry_advance_ctu() 10 4.418e-06 5.554e-06 6.638e-06 0.00% Castro::FluxRegFineAdd() 10 2.059e-06 2.589e-06 3.17e-06 0.00% DistributionMapping::Distribute() 1 9.5e-07 1.123e-06 1.404e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-5-g3ca867b8cce8) finalized