MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-5-g3ca867b8cce8) initialized Starting run at 05:38:10 UTC on 2022-05-10. Successfully read inputs file ... Castro git describe: 22.05-12-gb79cf4624 AMReX git describe: 22.05-5-g3ca867b8c Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.012610228 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.344568273 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339043737 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.322760854 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.323511189 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.325209961 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.353482819 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309325748 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.298954667 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.299733784 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.301667713 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009275496 seconds Ending run at 05:38:13 UTC on 2022-05-10. Run time = 3.405465591 Run time without initialization = 3.23087553 Average number of zones advanced per microsecond: 0.811 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.405 ... 3.405 ... 3.406 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2265 2.2751 2.3445 68.85% Gravity::make_radial_gravity() 21 0.3311 0.3436 0.3604 10.58% Castro::do_advance_ctu() 10 0.02924 0.09672 0.1422 4.17% Castro::initData() 1 0.03867 0.07757 0.1144 3.36% Castro::estTimeStep() 21 0.01773 0.06019 0.1051 3.09% FabArray::ParallelCopy_finish() 41 0.03135 0.04381 0.0899 2.64% FabArray::setVal() 143 0.05082 0.06688 0.07328 2.15% Castro::reset_internal_energy(Fab) 1008 0.04711 0.04924 0.05147 1.51% StateData::FillBoundary(geom) 41 0.03931 0.04133 0.04685 1.38% FabArray::ParallelCopy_nowait() 41 0.03336 0.04082 0.04274 1.26% Castro::normalize_species() 62 0.04073 0.04152 0.04262 1.25% FillPatchIterator::Initialize 41 0.02265 0.03066 0.03361 0.99% Gravity::interpolate_monopole_grav() 21 0.02716 0.02745 0.0277 0.81% Castro::construct_new_gravity_source() 10 0.02059 0.02373 0.02623 0.77% Castro::expand_state() 10 0.01174 0.0179 0.02057 0.60% Castro::computeTemp() 63 0.01715 0.01856 0.01942 0.57% Castro::initialize_do_advance() 10 0.01007 0.01597 0.01803 0.53% MultiFab::Saxpy() 20 0.01285 0.01454 0.01613 0.47% VisMF::Write(FabArray) 2 0.01039 0.01159 0.01374 0.40% Gravity::get_new_grav_vector() 11 0.009655 0.01104 0.01321 0.39% Castro::initialize_advance() 10 0.0038 0.01023 0.0131 0.38% MultiFab::contains_nan() 20 0.01037 0.0112 0.0122 0.36% Amr::writePlotFile() 2 0.008363 0.01064 0.01199 0.35% Castro::construct_old_gravity_source() 10 0.007008 0.01066 0.01187 0.35% FabArray::setDomainBndry() 41 0.006582 0.01004 0.01151 0.34% Gravity::get_old_grav_vector() 10 0.006724 0.009047 0.01065 0.31% Castro::initMFs() 1 0.005303 0.005665 0.006827 0.20% Castro::construct_new_source() 50 0.005795 0.006331 0.006611 0.19% Castro::enforce_min_density() 62 0.00559 0.006073 0.006432 0.19% StateData::define() 4 0.004364 0.004511 0.004889 0.14% main() 1 0.003715 0.003918 0.004096 0.12% Castro::swap_state_time_levels() 10 0.00245 0.00352 0.003845 0.11% Castro::buildMetrics() 1 0.00124 0.001289 0.001429 0.04% Castro::finalize_do_advance() 10 0.0004581 0.001017 0.001198 0.04% Amr::coarseTimeStep() 10 0.0004281 0.0006131 0.001045 0.03% Amr::timeStep() 10 0.0001713 0.0002273 0.0004929 0.01% Amr::InitAmr() 1 0.0002632 0.0002928 0.0003825 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002914 0.0003006 0.0003098 0.01% Castro::clean_state() 62 0.0001574 0.0001649 0.0001747 0.01% StateDataPhysBCFunct::() 41 0.0001189 0.0001343 0.0001613 0.00% DistributionMapping::LeastUsedCPUs() 1 7.207e-06 9.732e-05 0.0001196 0.00% Castro::enforce_consistent_e() 1 7.953e-05 8.81e-05 9.979e-05 0.00% Castro::Castro() 1 4.863e-05 6.329e-05 8.874e-05 0.00% Amr::FinalizeInit() 1 3.737e-06 1.522e-05 8.536e-05 0.00% Castro::construct_old_source() 50 4.522e-05 6.662e-05 8.358e-05 0.00% FillPatchSingleLevel 41 6.532e-05 7.048e-05 7.492e-05 0.00% FabArray::ParallelCopy() 41 5.79e-05 6.345e-05 7.347e-05 0.00% Castro::subcycle_advance_ctu() 10 5.097e-05 6.012e-05 7.266e-05 0.00% Castro::do_old_sources() 10 4.161e-05 5.857e-05 7.243e-05 0.00% Castro::do_new_sources() 10 4.885e-05 5.959e-05 7.006e-05 0.00% FabArrayBase::getCPC() 41 4.455e-05 5.217e-05 6.099e-05 0.00% Amr::writeSmallPlotFile() 1 5.288e-05 5.717e-05 6.01e-05 0.00% Castro::finalize_advance() 10 4.966e-05 5.354e-05 5.937e-05 0.00% Castro::advance() 10 3.519e-05 4.199e-05 5.35e-05 0.00% Castro::construct_old_gravity() 10 3.886e-05 4.705e-05 5.301e-05 0.00% Castro::apply_source_to_state() 20 3.564e-05 4.363e-05 4.904e-05 0.00% Castro::construct_new_gravity() 10 3.904e-05 4.284e-05 4.684e-05 0.00% Amr::defBaseLevel() 1 2.735e-05 3.451e-05 4.091e-05 0.00% FabArrayBase::CPC::define() 2 2.29e-05 2.598e-05 3.254e-05 0.00% Castro::enforce_speed_limit() 62 2.488e-05 2.735e-05 3.053e-05 0.00% Castro::check_for_nan() 20 1.907e-05 2.193e-05 2.536e-05 0.00% Castro::computeNewDt() 9 7.705e-06 1.06e-05 2.397e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.494e-05 1.676e-05 1.932e-05 0.00% Gravity::swapTimeLevels() 10 1.054e-05 1.255e-05 1.616e-05 0.00% Castro::post_init() 1 8.359e-06 1.026e-05 1.348e-05 0.00% Castro::post_timestep() 10 9.38e-06 1.095e-05 1.332e-05 0.00% Castro::FluxRegCrseInit 10 8.656e-06 9.902e-06 1.288e-05 0.00% Castro::create_source_corrector() 10 8.035e-06 1.019e-05 1.146e-05 0.00% Gravity::set_mass_offset() 10 9.287e-06 1.032e-05 1.137e-05 0.00% Amr::initSubcycle() 1 8.359e-06 9.087e-06 1.006e-05 0.00% Castro::post_regrid() 1 2.26e-06 4.223e-06 8.267e-06 0.00% Castro::retry_advance_ctu() 10 4.306e-06 5.713e-06 7.836e-06 0.00% Amr::InitializeInit() 1 2.091e-06 2.962e-06 6.551e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.854e-06 5.076e-06 6.475e-06 0.00% Castro::computeInitialDt() 2 3.338e-06 4.348e-06 5.52e-06 0.00% Amr::init() 1 2.059e-06 2.399e-06 2.87e-06 0.00% Castro::FluxRegFineAdd() 10 1.981e-06 2.341e-06 2.588e-06 0.00% Amr::initialInit() 1 1.207e-06 1.539e-06 1.811e-06 0.00% DistributionMapping::Distribute() 1 9.24e-07 1.093e-06 1.244e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.405 3.405 3.405 100.00% Amr::coarseTimeStep() 10 3.218 3.218 3.218 94.48% Amr::timeStep() 10 3.208 3.208 3.209 94.23% Castro::advance() 10 3.192 3.193 3.193 93.75% Castro::subcycle_advance_ctu() 10 3.119 3.124 3.142 92.28% Castro::do_advance_ctu() 10 3.119 3.124 3.142 92.27% Castro::construct_ctu_hydro_source() 10 2.227 2.275 2.345 68.85% Gravity::make_radial_gravity() 21 0.3311 0.3436 0.3604 10.58% Gravity::get_new_grav_vector() 11 0.2213 0.223 0.2251 6.61% Castro::construct_old_gravity() 10 0.1973 0.2057 0.2196 6.45% Gravity::get_old_grav_vector() 10 0.1965 0.205 0.219 6.43% Castro::construct_new_gravity() 10 0.1966 0.1977 0.1991 5.85% FillPatchIterator::Initialize 41 0.157 0.167 0.1929 5.66% Amr::init() 1 0.174 0.1741 0.1742 5.11% FillPatchSingleLevel 41 0.1143 0.1263 0.1636 4.81% Castro::initialize_do_advance() 10 0.1454 0.1546 0.1623 4.77% Amr::initialInit() 1 0.1611 0.1613 0.1615 4.74% Amr::InitializeInit() 1 0.05757 0.09586 0.1326 3.89% Amr::defBaseLevel() 1 0.05757 0.09586 0.1326 3.89% Castro::expand_state() 10 0.09858 0.1084 0.1242 3.65% FabArray::ParallelCopy() 41 0.07362 0.08477 0.1234 3.62% Castro::initData() 1 0.04225 0.08162 0.1187 3.49% Castro::clean_state() 62 0.1112 0.1149 0.118 3.47% Castro::estTimeStep() 21 0.01773 0.06019 0.1051 3.09% Amr::FinalizeInit() 1 0.02881 0.06541 0.1035 3.04% FabArray::ParallelCopy_finish() 41 0.03135 0.04381 0.0899 2.64% Castro::computeInitialDt() 2 0.001701 0.03844 0.07672 2.25% Castro::initialize_advance() 10 0.04941 0.06843 0.07339 2.16% FabArray::setVal() 143 0.05082 0.06688 0.07328 2.15% Castro::computeTemp() 63 0.06473 0.0681 0.07111 2.09% Castro::do_new_sources() 10 0.0571 0.06238 0.06769 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04741 0.04954 0.05177 1.52% Castro::reset_internal_energy(Fab) 1008 0.04711 0.04924 0.05147 1.51% Castro::do_old_sources() 10 0.03987 0.04625 0.04763 1.40% StateDataPhysBCFunct::() 41 0.03947 0.04147 0.04698 1.38% StateData::FillBoundary(geom) 41 0.03931 0.04133 0.04685 1.38% FabArray::ParallelCopy_nowait() 41 0.03345 0.0409 0.04283 1.26% Castro::normalize_species() 62 0.04073 0.04152 0.04262 1.25% Castro::construct_new_source() 50 0.02638 0.03006 0.03282 0.96% Gravity::interpolate_monopole_grav() 21 0.02716 0.02745 0.0277 0.81% Castro::post_init() 1 0.02573 0.02623 0.02648 0.78% Castro::construct_new_gravity_source() 10 0.02059 0.02373 0.02623 0.77% Amr::writePlotFile() 2 0.02205 0.02223 0.0224 0.66% Castro::apply_source_to_state() 20 0.01289 0.01458 0.01618 0.48% MultiFab::Saxpy() 20 0.01285 0.01454 0.01613 0.47% Castro::post_timestep() 10 0.0152 0.0156 0.01605 0.47% VisMF::Write(FabArray) 2 0.01039 0.01159 0.01374 0.40% Castro::check_for_nan() 20 0.01039 0.01122 0.01222 0.36% MultiFab::contains_nan() 20 0.01037 0.0112 0.0122 0.36% Castro::construct_old_source() 50 0.007053 0.01073 0.01195 0.35% Castro::construct_old_gravity_source() 10 0.007008 0.01066 0.01187 0.35% FabArray::setDomainBndry() 41 0.006582 0.01004 0.01151 0.34% Castro::Castro() 1 0.009222 0.009569 0.01045 0.31% Castro::computeNewDt() 9 0.006912 0.007648 0.008364 0.25% Castro::initMFs() 1 0.005303 0.005665 0.006827 0.20% Castro::enforce_min_density() 62 0.00559 0.006073 0.006432 0.19% AmrLevel::AmrLevel(dm) 1 0.00438 0.004528 0.004905 0.14% StateData::define() 4 0.004364 0.004511 0.004889 0.14% Castro::swap_state_time_levels() 10 0.00245 0.00352 0.003845 0.11% Castro::post_regrid() 1 0.001557 0.001631 0.00198 0.06% Castro::buildMetrics() 1 0.001363 0.001423 0.001582 0.05% Castro::finalize_do_advance() 10 0.0004581 0.001017 0.001198 0.04% Amr::InitAmr() 1 0.0002716 0.0003019 0.0003909 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.221e-05 0.0001035 0.0001272 0.00% DistributionMapping::LeastUsedCPUs() 1 7.207e-06 9.732e-05 0.0001196 0.00% Castro::enforce_consistent_e() 1 7.953e-05 8.81e-05 9.979e-05 0.00% FabArrayBase::getCPC() 41 6.745e-05 7.815e-05 8.748e-05 0.00% Castro::finalize_advance() 10 6.28e-05 6.578e-05 7.053e-05 0.00% Amr::writeSmallPlotFile() 1 5.288e-05 5.717e-05 6.01e-05 0.00% FabArrayBase::CPC::define() 2 2.29e-05 2.598e-05 3.254e-05 0.00% Castro::enforce_speed_limit() 62 2.488e-05 2.735e-05 3.053e-05 0.00% Gravity::swapTimeLevels() 10 1.054e-05 1.255e-05 1.616e-05 0.00% Castro::FluxRegCrseInit 10 8.656e-06 9.902e-06 1.288e-05 0.00% Castro::create_source_corrector() 10 8.035e-06 1.019e-05 1.146e-05 0.00% Gravity::set_mass_offset() 10 9.287e-06 1.032e-05 1.137e-05 0.00% Amr::initSubcycle() 1 8.359e-06 9.087e-06 1.006e-05 0.00% Castro::retry_advance_ctu() 10 4.306e-06 5.713e-06 7.836e-06 0.00% Castro::FluxRegFineAdd() 10 1.981e-06 2.341e-06 2.588e-06 0.00% DistributionMapping::Distribute() 1 9.24e-07 1.093e-06 1.244e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-5-g3ca867b8cce8) finalized