MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-6-gc4ad207584b0) initialized Starting run at 14:08:35 UTC on 2022-05-11. Successfully read inputs file ... Castro git describe: 22.05-21-ge341a51d4 AMReX git describe: 22.05-6-gc4ad20758 Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.0155265 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.412172385 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.351200647 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334451868 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326556706 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.348922426 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.319188014 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.302313331 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.30485697 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.301019261 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.29948354 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009362839 seconds Ending run at 14:08:39 UTC on 2022-05-11. Run time = 3.550196933 Run time without initialization = 3.313438278 Average number of zones advanced per microsecond: 0.791 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.55 ... 3.55 ... 3.55 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2670 2.2949 2.3340 65.74% Gravity::make_radial_gravity() 21 0.3616 0.3691 0.3793 10.68% Castro::initData() 1 0.04629 0.09225 0.1545 4.35% Castro::do_advance_ctu() 10 0.08691 0.1244 0.1544 4.35% Castro::estTimeStep() 21 0.02001 0.0917 0.1344 3.79% FabArray::setVal() 143 0.065 0.07098 0.07975 2.25% Castro::reset_internal_energy(Fab) 1008 0.04793 0.05071 0.0543 1.53% FabArray::ParallelCopy_finish() 41 0.04171 0.04642 0.05085 1.43% StateData::FillBoundary(geom) 41 0.04017 0.04286 0.04516 1.27% Castro::normalize_species() 62 0.04095 0.0422 0.04409 1.24% FabArray::ParallelCopy_nowait() 41 0.03916 0.04116 0.04254 1.20% FillPatchIterator::Initialize 41 0.02614 0.03121 0.03447 0.97% Gravity::interpolate_monopole_grav() 21 0.02712 0.02791 0.02951 0.83% Castro::construct_new_gravity_source() 10 0.02166 0.02425 0.0267 0.75% Castro::expand_state() 10 0.01532 0.01912 0.02095 0.59% Castro::computeTemp() 63 0.01799 0.01937 0.02077 0.59% Castro::initialize_do_advance() 10 0.01684 0.01771 0.01883 0.53% MultiFab::Saxpy() 20 0.01362 0.01482 0.01593 0.45% Amr::writePlotFile() 2 0.01011 0.01404 0.01561 0.44% VisMF::Write(FabArray) 2 0.01125 0.01205 0.01507 0.42% Castro::initialize_advance() 10 0.009649 0.01157 0.01351 0.38% Gravity::get_new_grav_vector() 11 0.00994 0.01116 0.0125 0.35% MultiFab::contains_nan() 20 0.01044 0.01135 0.01204 0.34% FabArray::setDomainBndry() 41 0.007627 0.01022 0.01124 0.32% Castro::construct_old_gravity_source() 10 0.01032 0.01064 0.011 0.31% Gravity::get_old_grav_vector() 10 0.008112 0.009269 0.01028 0.29% Castro::initMFs() 1 0.005356 0.006493 0.008367 0.24% Castro::enforce_min_density() 62 0.006506 0.007009 0.007473 0.21% Castro::construct_new_source() 50 0.006265 0.006406 0.006546 0.18% StateData::define() 4 0.004436 0.005207 0.006408 0.18% Castro::swap_state_time_levels() 10 0.003522 0.003937 0.004942 0.14% main() 1 0.003364 0.003826 0.004067 0.11% Castro::buildMetrics() 1 0.001258 0.001483 0.001839 0.05% Amr::coarseTimeStep() 10 0.0003363 0.0006004 0.001217 0.03% Castro::finalize_do_advance() 10 0.0008074 0.001019 0.001112 0.03% Amr::InitAmr() 1 0.000274 0.00035 0.000593 0.02% Amr::timeStep() 10 0.0001594 0.0002225 0.0004792 0.01% DistributionMapping::LeastUsedCPUs() 1 1.06e-05 0.000306 0.0004004 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002864 0.0003125 0.0003577 0.01% Castro::clean_state() 62 0.0001431 0.0001669 0.0001888 0.01% StateDataPhysBCFunct::() 41 0.0001246 0.0001544 0.0001876 0.01% Castro::enforce_consistent_e() 1 8.022e-05 9.718e-05 0.0001409 0.00% Castro::do_new_sources() 10 5.853e-05 6.893e-05 8.728e-05 0.00% Castro::do_old_sources() 10 5.435e-05 6.595e-05 8.453e-05 0.00% Castro::construct_old_source() 50 6.988e-05 7.481e-05 8.332e-05 0.00% FillPatchSingleLevel 41 6.416e-05 7.38e-05 8.013e-05 0.00% FabArray::ParallelCopy() 41 6.019e-05 6.997e-05 7.671e-05 0.00% Amr::writeSmallPlotFile() 1 2.52e-05 5.115e-05 7.292e-05 0.00% Amr::FinalizeInit() 1 3.56e-06 1.314e-05 7.241e-05 0.00% Castro::Castro() 1 5.535e-05 6.39e-05 7.137e-05 0.00% Castro::subcycle_advance_ctu() 10 5.025e-05 5.87e-05 6.987e-05 0.00% FabArrayBase::getCPC() 41 4.779e-05 5.419e-05 6.174e-05 0.00% Castro::finalize_advance() 10 4.914e-05 5.298e-05 5.981e-05 0.00% Castro::advance() 10 3.44e-05 4.291e-05 5.887e-05 0.00% Castro::apply_source_to_state() 20 4.26e-05 4.958e-05 5.712e-05 0.00% Castro::construct_old_gravity() 10 4.558e-05 5.235e-05 5.603e-05 0.00% Castro::construct_new_gravity() 10 3.472e-05 4.592e-05 5.448e-05 0.00% FabArrayBase::CPC::define() 2 1.995e-05 2.915e-05 4.056e-05 0.00% Castro::enforce_speed_limit() 62 2.534e-05 3.11e-05 4.043e-05 0.00% Amr::defBaseLevel() 1 2.232e-05 2.637e-05 2.999e-05 0.00% Castro::check_for_nan() 20 2.198e-05 2.577e-05 2.885e-05 0.00% Castro::post_init() 1 8.038e-06 1.247e-05 2.309e-05 0.00% Gravity::swapTimeLevels() 10 1.206e-05 1.404e-05 1.677e-05 0.00% Amr::initSubcycle() 1 8.791e-06 1.099e-05 1.586e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.593e-06 9.47e-06 1.376e-05 0.00% Castro::post_timestep() 10 8.998e-06 1.061e-05 1.259e-05 0.00% Castro::create_source_corrector() 10 9.275e-06 1.112e-05 1.259e-05 0.00% Gravity::set_mass_offset() 10 9.227e-06 1.003e-05 1.089e-05 0.00% Castro::FluxRegCrseInit 10 8.581e-06 9.337e-06 1.07e-05 0.00% Castro::computeNewDt() 9 8.282e-06 9.229e-06 1.024e-05 0.00% Amr::InitializeInit() 1 2.223e-06 3.45e-06 1.001e-05 0.00% Castro::retry_advance_ctu() 10 4.527e-06 5.45e-06 6.215e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.125e-06 4.66e-06 5.729e-06 0.00% Castro::computeInitialDt() 2 3.065e-06 4.296e-06 5.362e-06 0.00% Castro::post_regrid() 1 2.076e-06 3.424e-06 5.241e-06 0.00% Castro::FluxRegFineAdd() 10 2.213e-06 2.661e-06 3.118e-06 0.00% Amr::init() 1 1.965e-06 2.356e-06 3.047e-06 0.00% Amr::initialInit() 1 1.246e-06 1.618e-06 2.378e-06 0.00% DistributionMapping::Distribute() 1 1.131e-06 1.304e-06 1.642e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.55 3.55 3.55 100.00% Amr::coarseTimeStep() 10 3.3 3.3 3.3 92.95% Amr::timeStep() 10 3.29 3.291 3.291 92.70% Castro::advance() 10 3.274 3.274 3.275 92.24% Castro::subcycle_advance_ctu() 10 3.196 3.2 3.205 90.28% Castro::do_advance_ctu() 10 3.196 3.2 3.205 90.28% Castro::construct_ctu_hydro_source() 10 2.267 2.295 2.334 65.74% Gravity::make_radial_gravity() 21 0.3616 0.3691 0.3793 10.68% Gravity::get_new_grav_vector() 11 0.2361 0.2373 0.2387 6.72% Amr::init() 1 0.236 0.2363 0.2363 6.66% Castro::construct_old_gravity() 10 0.214 0.2195 0.227 6.39% Gravity::get_old_grav_vector() 10 0.2132 0.2188 0.2263 6.37% Amr::initialInit() 1 0.2189 0.2196 0.2202 6.20% Castro::construct_new_gravity() 10 0.1996 0.2002 0.201 5.66% FillPatchIterator::Initialize 41 0.164 0.1723 0.1812 5.10% Amr::InitializeInit() 1 0.06561 0.1122 0.1783 5.02% Amr::defBaseLevel() 1 0.06561 0.1122 0.1783 5.02% Castro::initialize_do_advance() 10 0.1522 0.1616 0.1691 4.76% Castro::initData() 1 0.05057 0.09658 0.1596 4.50% Amr::FinalizeInit() 1 0.04193 0.1074 0.1533 4.32% FillPatchSingleLevel 41 0.1282 0.1308 0.1363 3.84% Castro::estTimeStep() 21 0.02001 0.0917 0.1344 3.79% Castro::clean_state() 62 0.1133 0.1187 0.1249 3.52% Castro::expand_state() 10 0.1032 0.1129 0.1192 3.36% Castro::computeInitialDt() 2 0.002487 0.06863 0.1153 3.25% FabArray::ParallelCopy() 41 0.08435 0.08773 0.09219 2.60% FabArray::setVal() 143 0.065 0.07098 0.07975 2.25% Castro::initialize_advance() 10 0.06938 0.07397 0.07823 2.20% Castro::computeTemp() 63 0.06621 0.0704 0.07474 2.11% Castro::do_new_sources() 10 0.05947 0.06506 0.07132 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04822 0.05103 0.05466 1.54% Castro::reset_internal_energy(Fab) 1008 0.04793 0.05071 0.0543 1.53% FabArray::ParallelCopy_finish() 41 0.04171 0.04642 0.05085 1.43% Castro::do_old_sources() 10 0.04543 0.0466 0.0486 1.37% StateDataPhysBCFunct::() 41 0.04034 0.04302 0.04528 1.28% StateData::FillBoundary(geom) 41 0.04017 0.04286 0.04516 1.27% Castro::normalize_species() 62 0.04095 0.0422 0.04409 1.24% FabArray::ParallelCopy_nowait() 41 0.03925 0.04124 0.04262 1.20% Castro::post_init() 1 0.03749 0.03813 0.0387 1.09% Castro::construct_new_source() 50 0.028 0.03066 0.03307 0.93% Gravity::interpolate_monopole_grav() 21 0.02712 0.02791 0.02951 0.83% Amr::writePlotFile() 2 0.02518 0.02609 0.02686 0.76% Castro::construct_new_gravity_source() 10 0.02166 0.02425 0.0267 0.75% Castro::post_timestep() 10 0.01547 0.01588 0.01625 0.46% Castro::apply_source_to_state() 20 0.01366 0.01487 0.01599 0.45% MultiFab::Saxpy() 20 0.01362 0.01482 0.01593 0.45% VisMF::Write(FabArray) 2 0.01125 0.01205 0.01507 0.42% Castro::check_for_nan() 20 0.01047 0.01137 0.01207 0.34% MultiFab::contains_nan() 20 0.01044 0.01135 0.01204 0.34% Castro::Castro() 1 0.00796 0.0101 0.01201 0.34% FabArray::setDomainBndry() 41 0.007627 0.01022 0.01124 0.32% Castro::construct_old_source() 50 0.01039 0.01071 0.01108 0.31% Castro::construct_old_gravity_source() 10 0.01032 0.01064 0.011 0.31% Castro::initMFs() 1 0.005356 0.006493 0.008367 0.24% Castro::computeNewDt() 9 0.006982 0.007504 0.007755 0.22% Castro::enforce_min_density() 62 0.006506 0.007009 0.007473 0.21% AmrLevel::AmrLevel(dm) 1 0.004445 0.005216 0.006419 0.18% StateData::define() 4 0.004436 0.005207 0.006408 0.18% Castro::swap_state_time_levels() 10 0.003522 0.003937 0.004942 0.14% Castro::post_regrid() 1 0.001557 0.002003 0.002942 0.08% Castro::buildMetrics() 1 0.001381 0.001645 0.002069 0.06% Castro::finalize_do_advance() 10 0.0008074 0.001019 0.001112 0.03% Amr::InitAmr() 1 0.0002828 0.000361 0.0006082 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.669e-05 0.000312 0.0004073 0.01% DistributionMapping::LeastUsedCPUs() 1 1.06e-05 0.000306 0.0004004 0.01% Castro::enforce_consistent_e() 1 8.022e-05 9.718e-05 0.0001409 0.00% FabArrayBase::getCPC() 41 7.13e-05 8.334e-05 9.332e-05 0.00% Amr::writeSmallPlotFile() 1 2.52e-05 5.115e-05 7.292e-05 0.00% Castro::finalize_advance() 10 6.04e-05 6.498e-05 7.151e-05 0.00% FabArrayBase::CPC::define() 2 1.995e-05 2.915e-05 4.056e-05 0.00% Castro::enforce_speed_limit() 62 2.534e-05 3.11e-05 4.043e-05 0.00% Gravity::swapTimeLevels() 10 1.206e-05 1.404e-05 1.677e-05 0.00% Amr::initSubcycle() 1 8.791e-06 1.099e-05 1.586e-05 0.00% Castro::create_source_corrector() 10 9.275e-06 1.112e-05 1.259e-05 0.00% Gravity::set_mass_offset() 10 9.227e-06 1.003e-05 1.089e-05 0.00% Castro::FluxRegCrseInit 10 8.581e-06 9.337e-06 1.07e-05 0.00% Castro::retry_advance_ctu() 10 4.527e-06 5.45e-06 6.215e-06 0.00% Castro::FluxRegFineAdd() 10 2.213e-06 2.661e-06 3.118e-06 0.00% DistributionMapping::Distribute() 1 1.131e-06 1.304e-06 1.642e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-6-gc4ad207584b0) finalized