MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-10-g0b485513b4de) initialized Starting run at 05:38:20 UTC on 2022-05-12. Successfully read inputs file ... Castro git describe: 22.05-14-g587b076f4 AMReX git describe: 22.05-10-g0b485513b Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013796827 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.343346756 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336217954 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335597241 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336066978 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.34653311 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342738307 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.334978672 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.333235528 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.334100715 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.335153674 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009579465 seconds Ending run at 05:38:24 UTC on 2022-05-12. Run time = 3.605155079 Run time without initialization = 3.392998331 Average number of zones advanced per microsecond: 0.773 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.603 ... 3.605 ... 3.605 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0950 2.3422 2.4549 68.09% Castro::do_advance_ctu() 10 0.02334 0.1411 0.3907 10.84% Gravity::make_radial_gravity() 21 0.3448 0.3597 0.3886 10.78% Castro::initData() 1 0.04729 0.09209 0.1449 4.02% Castro::estTimeStep() 21 0.0345 0.08636 0.1308 3.63% FabArray::ParallelCopy_finish() 41 0.03815 0.06101 0.1284 3.56% FabArray::setVal() 143 0.05405 0.06628 0.07073 1.96% Castro::reset_internal_energy(Fab) 1008 0.04704 0.05 0.05163 1.43% FabArray::ParallelCopy_nowait() 41 0.0249 0.04287 0.04859 1.35% StateData::FillBoundary(geom) 41 0.03506 0.04195 0.04654 1.29% Castro::normalize_species() 62 0.0396 0.04193 0.04327 1.20% FillPatchIterator::Initialize 41 0.01934 0.03224 0.03762 1.04% Castro::construct_new_gravity_source() 10 0.02004 0.02428 0.02916 0.81% Gravity::interpolate_monopole_grav() 21 0.02653 0.02771 0.02827 0.78% Castro::expand_state() 10 0.009364 0.01834 0.02191 0.61% Castro::computeTemp() 63 0.01783 0.01905 0.01979 0.55% Castro::initialize_do_advance() 10 0.00828 0.01627 0.01844 0.51% MultiFab::Saxpy() 20 0.008779 0.01428 0.01615 0.45% FabArray::setDomainBndry() 41 0.005888 0.01194 0.01518 0.42% VisMF::Write(FabArray) 2 0.01059 0.01141 0.01415 0.39% Amr::writePlotFile() 2 0.009456 0.01264 0.01358 0.38% Gravity::get_new_grav_vector() 11 0.006966 0.01105 0.01248 0.35% MultiFab::contains_nan() 20 0.009283 0.011 0.01224 0.34% Castro::construct_old_gravity_source() 10 0.005173 0.01011 0.01197 0.33% Gravity::get_old_grav_vector() 10 0.005627 0.009457 0.01087 0.30% Castro::initialize_advance() 10 0.003208 0.008588 0.009521 0.26% Castro::initMFs() 1 0.005435 0.006922 0.00807 0.22% Castro::construct_new_source() 50 0.00483 0.006676 0.008033 0.22% Castro::enforce_min_density() 62 0.006018 0.00683 0.007266 0.20% StateData::define() 4 0.004554 0.005812 0.006702 0.19% main() 1 0.003423 0.005055 0.005539 0.15% Castro::swap_state_time_levels() 10 0.002582 0.003623 0.003913 0.11% Amr::coarseTimeStep() 10 0.0003729 0.0007724 0.002364 0.07% Castro::buildMetrics() 1 0.001317 0.001654 0.001928 0.05% Castro::finalize_do_advance() 10 0.0005345 0.001059 0.001237 0.03% Amr::timeStep() 10 0.0001596 0.0002227 0.0005271 0.01% Amr::InitAmr() 1 0.0002759 0.0003876 0.0004607 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002913 0.0003044 0.000325 0.01% DistributionMapping::LeastUsedCPUs() 1 6.927e-06 8.831e-05 0.0002226 0.01% StateDataPhysBCFunct::() 41 0.0001236 0.0001369 0.0001803 0.01% Castro::clean_state() 62 0.0001284 0.0001536 0.0001693 0.00% Castro::enforce_consistent_e() 1 8.126e-05 9.712e-05 0.0001431 0.00% Castro::construct_old_source() 50 2.873e-05 7.518e-05 0.0001049 0.00% Castro::do_new_sources() 10 3.751e-05 6.342e-05 8.697e-05 0.00% Castro::do_old_sources() 10 3.394e-05 6.481e-05 8.066e-05 0.00% Amr::FinalizeInit() 1 3.458e-06 1.307e-05 7.522e-05 0.00% FabArray::ParallelCopy() 41 4.479e-05 6.412e-05 7.404e-05 0.00% Castro::Castro() 1 4.871e-05 5.795e-05 7.053e-05 0.00% FillPatchSingleLevel 41 5.108e-05 6.3e-05 7.004e-05 0.00% Amr::writeSmallPlotFile() 1 2.958e-05 5.081e-05 6.996e-05 0.00% Castro::construct_old_gravity() 10 3.248e-05 5.275e-05 6.698e-05 0.00% Castro::finalize_advance() 10 4.521e-05 5.155e-05 6.551e-05 0.00% Castro::apply_source_to_state() 20 3.164e-05 5.028e-05 6.179e-05 0.00% Castro::subcycle_advance_ctu() 10 3.09e-05 4.822e-05 5.798e-05 0.00% FabArrayBase::getCPC() 41 4.781e-05 5.243e-05 5.703e-05 0.00% Castro::construct_new_gravity() 10 3.346e-05 4.297e-05 5.033e-05 0.00% Castro::advance() 10 2.6e-05 3.824e-05 4.416e-05 0.00% Amr::defBaseLevel() 1 2.681e-05 3.354e-05 3.972e-05 0.00% FabArrayBase::CPC::define() 2 2.089e-05 2.496e-05 3.044e-05 0.00% Castro::check_for_nan() 20 2.056e-05 2.499e-05 2.877e-05 0.00% Castro::enforce_speed_limit() 62 2.06e-05 2.48e-05 2.703e-05 0.00% Castro::post_timestep() 10 9.547e-06 1.41e-05 2.227e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.438e-05 1.709e-05 2.003e-05 0.00% Castro::FluxRegCrseInit 10 7.694e-06 1.168e-05 1.788e-05 0.00% Gravity::swapTimeLevels() 10 7.603e-06 1.242e-05 1.59e-05 0.00% Gravity::set_mass_offset() 10 7.369e-06 9.921e-06 1.535e-05 0.00% Castro::post_init() 1 7.148e-06 9.666e-06 1.532e-05 0.00% Castro::create_source_corrector() 10 6.738e-06 1.117e-05 1.478e-05 0.00% Amr::initSubcycle() 1 8.988e-06 1.231e-05 1.418e-05 0.00% Castro::computeNewDt() 9 6.953e-06 8.716e-06 1.06e-05 0.00% Castro::computeInitialDt() 2 2.881e-06 4.568e-06 1.049e-05 0.00% Amr::InitializeInit() 1 2.258e-06 3.276e-06 7.683e-06 0.00% Castro::retry_advance_ctu() 10 4.068e-06 5.66e-06 6.821e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.264e-06 5.016e-06 6.639e-06 0.00% Castro::post_regrid() 1 1.83e-06 2.943e-06 5.393e-06 0.00% Castro::FluxRegFineAdd() 10 1.687e-06 2.366e-06 2.993e-06 0.00% Amr::init() 1 1.646e-06 2e-06 2.44e-06 0.00% Amr::initialInit() 1 1.079e-06 1.515e-06 2.044e-06 0.00% DistributionMapping::Distribute() 1 1.03e-06 1.194e-06 1.421e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.603 3.605 3.605 100.00% Amr::coarseTimeStep() 10 3.378 3.378 3.378 93.70% Amr::timeStep() 10 3.367 3.368 3.369 93.45% Castro::advance() 10 3.351 3.352 3.352 92.98% Castro::subcycle_advance_ctu() 10 3.281 3.284 3.298 91.47% Castro::do_advance_ctu() 10 3.281 3.284 3.298 91.47% Castro::construct_ctu_hydro_source() 10 2.095 2.342 2.455 68.09% Gravity::make_radial_gravity() 21 0.3448 0.3597 0.3886 10.78% Castro::construct_old_gravity() 10 0.2025 0.2153 0.2379 6.60% Gravity::get_old_grav_vector() 10 0.2016 0.2145 0.2374 6.58% Gravity::get_new_grav_vector() 11 0.2319 0.2334 0.2347 6.51% FillPatchIterator::Initialize 41 0.1829 0.1903 0.214 5.93% Amr::init() 1 0.2115 0.2116 0.2118 5.87% Castro::construct_new_gravity() 10 0.2059 0.2072 0.2082 5.78% Amr::initialInit() 1 0.197 0.1972 0.1976 5.48% FillPatchSingleLevel 41 0.1314 0.1462 0.1886 5.23% Castro::initialize_do_advance() 10 0.1632 0.173 0.1803 5.00% Amr::InitializeInit() 1 0.06607 0.1126 0.1679 4.66% Amr::defBaseLevel() 1 0.06606 0.1126 0.1679 4.66% FabArray::ParallelCopy() 41 0.08688 0.104 0.1534 4.25% Castro::initData() 1 0.05146 0.09613 0.1489 4.13% Amr::FinalizeInit() 1 0.02914 0.0846 0.1316 3.65% Castro::expand_state() 10 0.1197 0.1262 0.1315 3.65% Castro::estTimeStep() 21 0.0345 0.08636 0.1308 3.63% FabArray::ParallelCopy_finish() 41 0.03815 0.06101 0.1284 3.56% Castro::clean_state() 62 0.11 0.1173 0.1199 3.33% Castro::computeInitialDt() 2 0.001728 0.05705 0.1036 2.87% Castro::computeTemp() 63 0.06517 0.06936 0.07169 1.99% Castro::initialize_advance() 10 0.05343 0.06764 0.071 1.97% FabArray::setVal() 143 0.05405 0.06628 0.07073 1.96% Castro::do_new_sources() 10 0.05281 0.06406 0.06707 1.86% Castro::reset_internal_energy(MultiFab) 63 0.04734 0.05031 0.05194 1.44% Castro::reset_internal_energy(Fab) 1008 0.04704 0.05 0.05163 1.43% Castro::do_old_sources() 10 0.03317 0.04552 0.04916 1.36% FabArray::ParallelCopy_nowait() 41 0.02497 0.04295 0.04867 1.35% StateDataPhysBCFunct::() 41 0.03519 0.04208 0.04667 1.29% StateData::FillBoundary(geom) 41 0.03506 0.04195 0.04654 1.29% Castro::normalize_species() 62 0.0396 0.04193 0.04327 1.20% Castro::construct_new_source() 50 0.02487 0.03095 0.03527 0.98% Castro::construct_new_gravity_source() 10 0.02004 0.02428 0.02916 0.81% Gravity::interpolate_monopole_grav() 21 0.02653 0.02771 0.02827 0.78% Castro::post_init() 1 0.02672 0.02694 0.02713 0.75% Amr::writePlotFile() 2 0.02361 0.02404 0.02431 0.67% Castro::post_timestep() 10 0.01497 0.01627 0.01678 0.47% Castro::apply_source_to_state() 20 0.008811 0.01433 0.0162 0.45% MultiFab::Saxpy() 20 0.008779 0.01428 0.01615 0.45% FabArray::setDomainBndry() 41 0.005888 0.01194 0.01518 0.42% VisMF::Write(FabArray) 2 0.01059 0.01141 0.01415 0.39% Castro::Castro() 1 0.00816 0.01054 0.0123 0.34% Castro::check_for_nan() 20 0.009304 0.01103 0.01226 0.34% MultiFab::contains_nan() 20 0.009283 0.011 0.01224 0.34% Castro::construct_old_source() 50 0.005202 0.01019 0.01208 0.34% Castro::construct_old_gravity_source() 10 0.005173 0.01011 0.01197 0.33% Castro::computeNewDt() 9 0.007222 0.00781 0.00938 0.26% Castro::initMFs() 1 0.005435 0.006922 0.00807 0.22% Castro::enforce_min_density() 62 0.006018 0.00683 0.007266 0.20% AmrLevel::AmrLevel(dm) 1 0.004568 0.005829 0.006722 0.19% StateData::define() 4 0.004554 0.005812 0.006702 0.19% Castro::swap_state_time_levels() 10 0.002582 0.003623 0.003913 0.11% Castro::buildMetrics() 1 0.001424 0.001826 0.002151 0.06% Castro::post_regrid() 1 0.001423 0.001593 0.001951 0.05% Castro::finalize_do_advance() 10 0.0005345 0.001059 0.001237 0.03% Amr::InitAmr() 1 0.0002849 0.0003999 0.0004743 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.263e-05 9.452e-05 0.0002304 0.01% DistributionMapping::LeastUsedCPUs() 1 6.927e-06 8.831e-05 0.0002226 0.01% Castro::enforce_consistent_e() 1 8.126e-05 9.712e-05 0.0001431 0.00% FabArrayBase::getCPC() 41 7.274e-05 7.738e-05 8.411e-05 0.00% Castro::finalize_advance() 10 5.459e-05 6.561e-05 7.651e-05 0.00% Amr::writeSmallPlotFile() 1 2.958e-05 5.081e-05 6.996e-05 0.00% FabArrayBase::CPC::define() 2 2.089e-05 2.496e-05 3.044e-05 0.00% Castro::enforce_speed_limit() 62 2.06e-05 2.48e-05 2.703e-05 0.00% Castro::FluxRegCrseInit 10 7.694e-06 1.168e-05 1.788e-05 0.00% Gravity::swapTimeLevels() 10 7.603e-06 1.242e-05 1.59e-05 0.00% Gravity::set_mass_offset() 10 7.369e-06 9.921e-06 1.535e-05 0.00% Castro::create_source_corrector() 10 6.738e-06 1.117e-05 1.478e-05 0.00% Amr::initSubcycle() 1 8.988e-06 1.231e-05 1.418e-05 0.00% Castro::retry_advance_ctu() 10 4.068e-06 5.66e-06 6.821e-06 0.00% Castro::FluxRegFineAdd() 10 1.687e-06 2.366e-06 2.993e-06 0.00% DistributionMapping::Distribute() 1 1.03e-06 1.194e-06 1.421e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-10-g0b485513b4de) finalized