MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-19-g11cd801494b6) initialized Starting run at 17:54:45 UTC on 2022-05-16. Successfully read inputs file ... Castro git describe: 22.05-19-gfc3ef08e3 AMReX git describe: 22.05-19-g11cd80149 Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014341941 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.349026681 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.3425229 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335357002 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334822683 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.333846633 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.340314481 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.330062494 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.33044104 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.330602937 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.331167285 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.065021661 seconds Ending run at 17:54:49 UTC on 2022-05-16. Run time = 3.618571899 Run time without initialization = 3.428793019 Average number of zones advanced per microsecond: 0.765 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.618 ... 3.618 ... 3.619 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0288 2.3314 2.4444 67.55% Castro::do_advance_ctu() 10 0.03394 0.1478 0.4536 12.54% Gravity::make_radial_gravity() 21 0.3413 0.3557 0.3871 10.70% FabArray::ParallelCopy_finish() 41 0.03995 0.0584 0.1292 3.57% Castro::initData() 1 0.0405 0.08057 0.1251 3.46% Castro::estTimeStep() 21 0.02012 0.06885 0.1168 3.23% FabArray::setVal() 143 0.05028 0.06842 0.07339 2.03% Amr::writePlotFile() 2 0.06291 0.06709 0.06805 1.88% Castro::reset_internal_energy(Fab) 1008 0.04414 0.04909 0.05225 1.44% FabArray::ParallelCopy_nowait() 41 0.02494 0.04283 0.0483 1.33% StateData::FillBoundary(geom) 41 0.03368 0.04248 0.04756 1.31% Castro::normalize_species() 62 0.0389 0.04142 0.04295 1.19% FillPatchIterator::Initialize 41 0.0195 0.03203 0.03702 1.02% Gravity::interpolate_monopole_grav() 21 0.02583 0.02735 0.02813 0.78% Castro::construct_new_gravity_source() 10 0.01745 0.02267 0.02401 0.66% Castro::expand_state() 10 0.009508 0.01841 0.02143 0.59% Castro::computeTemp() 63 0.01619 0.01834 0.01979 0.55% Castro::initialize_do_advance() 10 0.008366 0.01675 0.0194 0.54% VisMF::Write(FabArray) 2 0.01177 0.01267 0.01669 0.46% MultiFab::Saxpy() 20 0.008357 0.01427 0.01631 0.45% FabArray::setDomainBndry() 41 0.006136 0.0115 0.0146 0.40% Gravity::get_new_grav_vector() 11 0.008232 0.01123 0.01218 0.34% MultiFab::contains_nan() 20 0.009894 0.01098 0.01198 0.33% Castro::construct_old_gravity_source() 10 0.004882 0.009891 0.01157 0.32% Gravity::get_old_grav_vector() 10 0.005366 0.009554 0.01089 0.30% Castro::initialize_advance() 10 0.006589 0.01018 0.01084 0.30% Castro::construct_new_source() 50 0.004689 0.006412 0.007006 0.19% Castro::initMFs() 1 0.005593 0.005927 0.006578 0.18% Castro::enforce_min_density() 62 0.005246 0.006107 0.006467 0.18% main() 1 0.005099 0.005465 0.005759 0.16% StateData::define() 4 0.004578 0.00484 0.005073 0.14% Castro::swap_state_time_levels() 10 0.002774 0.003716 0.004313 0.12% Amr::coarseTimeStep() 10 0.0003981 0.000822 0.001716 0.05% Castro::finalize_do_advance() 10 0.0004793 0.001243 0.00152 0.04% Castro::buildMetrics() 1 0.001317 0.001381 0.001473 0.04% Amr::timeStep() 10 0.0001716 0.0002342 0.0004962 0.01% Amr::InitAmr() 1 0.0002649 0.0003107 0.000439 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003072 0.0003311 0.0004125 0.01% DistributionMapping::LeastUsedCPUs() 1 8.529e-06 0.0001555 0.000205 0.01% Castro::clean_state() 62 0.0001482 0.0001767 0.0001963 0.01% StateDataPhysBCFunct::() 41 0.0001131 0.0001451 0.0001862 0.01% Castro::enforce_consistent_e() 1 7.673e-05 9.026e-05 0.0001103 0.00% Castro::construct_old_source() 50 4.373e-05 7.349e-05 9.602e-05 0.00% Castro::do_new_sources() 10 4.184e-05 7.056e-05 9.179e-05 0.00% Castro::Castro() 1 5.023e-05 6.591e-05 8.441e-05 0.00% FabArray::ParallelCopy() 41 6.4e-05 7.561e-05 8.325e-05 0.00% Castro::subcycle_advance_ctu() 10 4.477e-05 6.033e-05 8.291e-05 0.00% Amr::FinalizeInit() 1 3.711e-06 1.452e-05 8.12e-05 0.00% FillPatchSingleLevel 41 6.249e-05 7.29e-05 8.026e-05 0.00% Castro::do_old_sources() 10 3.747e-05 6.481e-05 7.795e-05 0.00% FabArrayBase::getCPC() 41 5.426e-05 6.106e-05 6.867e-05 0.00% Castro::construct_old_gravity() 10 3.869e-05 5.583e-05 6.719e-05 0.00% Amr::writeSmallPlotFile() 1 3.064e-05 5.094e-05 6.039e-05 0.00% Castro::advance() 10 3.844e-05 5.025e-05 5.975e-05 0.00% Castro::apply_source_to_state() 20 3.47e-05 4.768e-05 5.735e-05 0.00% Castro::finalize_advance() 10 4.969e-05 5.372e-05 5.643e-05 0.00% Castro::construct_new_gravity() 10 4.128e-05 4.782e-05 5.229e-05 0.00% Castro::enforce_speed_limit() 62 2.493e-05 3.003e-05 3.387e-05 0.00% Amr::defBaseLevel() 1 2.706e-05 3.026e-05 3.36e-05 0.00% FabArrayBase::CPC::define() 2 2.24e-05 2.596e-05 3.005e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.496e-05 2.213e-05 2.917e-05 0.00% Castro::check_for_nan() 20 2.467e-05 2.635e-05 2.853e-05 0.00% Gravity::swapTimeLevels() 10 5.411e-06 1.284e-05 1.749e-05 0.00% Castro::FluxRegCrseInit 10 5.772e-06 1.051e-05 1.432e-05 0.00% Castro::post_timestep() 10 8.867e-06 1.077e-05 1.392e-05 0.00% Castro::create_source_corrector() 10 6.602e-06 1.064e-05 1.378e-05 0.00% Amr::initSubcycle() 1 7.802e-06 9.422e-06 1.373e-05 0.00% Gravity::set_mass_offset() 10 6.48e-06 1.048e-05 1.274e-05 0.00% Castro::computeNewDt() 9 7.15e-06 9.811e-06 1.162e-05 0.00% Castro::post_init() 1 8.093e-06 9.594e-06 1.083e-05 0.00% Castro::retry_advance_ctu() 10 4.161e-06 6.147e-06 8.021e-06 0.00% Amr::InitializeInit() 1 2.106e-06 3.632e-06 7.861e-06 0.00% Castro::computeInitialDt() 2 3.061e-06 4.346e-06 5.773e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.579e-06 4.305e-06 4.919e-06 0.00% Castro::post_regrid() 1 1.939e-06 3.393e-06 4.728e-06 0.00% Castro::FluxRegFineAdd() 10 1.804e-06 2.192e-06 3.079e-06 0.00% Amr::init() 1 1.865e-06 2.062e-06 2.267e-06 0.00% Amr::initialInit() 1 1.171e-06 1.366e-06 1.533e-06 0.00% DistributionMapping::Distribute() 1 9.8e-07 1.16e-06 1.374e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.618 3.618 3.619 100.00% Amr::coarseTimeStep() 10 3.358 3.358 3.358 92.80% Amr::timeStep() 10 3.349 3.349 3.349 92.56% Castro::advance() 10 3.332 3.333 3.333 92.12% Castro::subcycle_advance_ctu() 10 3.258 3.263 3.28 90.64% Castro::do_advance_ctu() 10 3.258 3.263 3.28 90.64% Castro::construct_ctu_hydro_source() 10 2.029 2.331 2.444 67.55% Gravity::make_radial_gravity() 21 0.3413 0.3557 0.3871 10.70% Castro::construct_old_gravity() 10 0.2033 0.2152 0.2388 6.60% Gravity::get_old_grav_vector() 10 0.2025 0.2144 0.2383 6.59% Gravity::get_new_grav_vector() 11 0.2282 0.23 0.2308 6.38% FillPatchIterator::Initialize 41 0.1802 0.1876 0.2142 5.92% Castro::construct_new_gravity() 10 0.202 0.2032 0.204 5.64% Amr::init() 1 0.1892 0.1893 0.1894 5.23% FillPatchSingleLevel 41 0.1305 0.1441 0.1885 5.21% Castro::initialize_do_advance() 10 0.1567 0.1698 0.1762 4.87% Amr::initialInit() 1 0.1744 0.1747 0.175 4.84% FabArray::ParallelCopy() 41 0.08703 0.1014 0.1543 4.26% Amr::InitializeInit() 1 0.05971 0.09969 0.1448 4.00% Amr::defBaseLevel() 1 0.0597 0.09968 0.1448 4.00% FabArray::ParallelCopy_finish() 41 0.03995 0.0584 0.1292 3.57% Castro::initData() 1 0.04409 0.08466 0.1287 3.56% Castro::expand_state() 10 0.1122 0.1233 0.1281 3.54% Castro::clean_state() 62 0.1055 0.1145 0.1199 3.31% Castro::estTimeStep() 21 0.02012 0.06885 0.1168 3.23% Amr::FinalizeInit() 1 0.02965 0.075 0.115 3.18% Castro::computeInitialDt() 2 0.001589 0.04667 0.0865 2.39% Amr::writePlotFile() 2 0.07947 0.07975 0.08002 2.21% Castro::initialize_advance() 10 0.05223 0.06957 0.07516 2.08% FabArray::setVal() 143 0.05028 0.06842 0.07339 2.03% Castro::computeTemp() 63 0.06063 0.06776 0.07246 2.00% Castro::do_new_sources() 10 0.04989 0.06191 0.06529 1.80% Castro::reset_internal_energy(MultiFab) 63 0.04445 0.04942 0.05267 1.46% Castro::reset_internal_energy(Fab) 1008 0.04414 0.04909 0.05225 1.44% Castro::do_old_sources() 10 0.03182 0.04534 0.04914 1.36% FabArray::ParallelCopy_nowait() 41 0.02504 0.04291 0.04839 1.34% StateDataPhysBCFunct::() 41 0.03379 0.04263 0.0477 1.32% StateData::FillBoundary(geom) 41 0.03368 0.04248 0.04756 1.31% Castro::normalize_species() 62 0.0389 0.04142 0.04295 1.19% Castro::construct_new_source() 50 0.02214 0.02908 0.03102 0.86% Gravity::interpolate_monopole_grav() 21 0.02583 0.02735 0.02813 0.78% Castro::post_init() 1 0.02737 0.02756 0.02788 0.77% Castro::construct_new_gravity_source() 10 0.01745 0.02267 0.02401 0.66% VisMF::Write(FabArray) 2 0.01177 0.01267 0.01669 0.46% Castro::apply_source_to_state() 20 0.008404 0.01431 0.01636 0.45% MultiFab::Saxpy() 20 0.008357 0.01427 0.01631 0.45% Castro::post_timestep() 10 0.01516 0.01565 0.0161 0.44% FabArray::setDomainBndry() 41 0.006136 0.0115 0.0146 0.40% Castro::check_for_nan() 20 0.009921 0.01101 0.01201 0.33% MultiFab::contains_nan() 20 0.009894 0.01098 0.01198 0.33% Castro::construct_old_source() 50 0.004926 0.009965 0.01167 0.32% Castro::construct_old_gravity_source() 10 0.004882 0.009891 0.01157 0.32% Castro::Castro() 1 0.009425 0.009969 0.01075 0.30% Castro::computeNewDt() 9 0.006907 0.007403 0.008039 0.22% Castro::initMFs() 1 0.005593 0.005927 0.006578 0.18% Castro::enforce_min_density() 62 0.005246 0.006107 0.006467 0.18% AmrLevel::AmrLevel(dm) 1 0.004606 0.004863 0.005097 0.14% StateData::define() 4 0.004578 0.00484 0.005073 0.14% Castro::swap_state_time_levels() 10 0.002774 0.003716 0.004313 0.12% Castro::post_regrid() 1 0.001568 0.001661 0.00187 0.05% Castro::buildMetrics() 1 0.00144 0.001511 0.001615 0.04% Castro::finalize_do_advance() 10 0.0004793 0.001243 0.00152 0.04% Amr::InitAmr() 1 0.0002731 0.0003201 0.0004481 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.392e-05 0.000161 0.0002111 0.01% DistributionMapping::LeastUsedCPUs() 1 8.529e-06 0.0001555 0.000205 0.01% Castro::enforce_consistent_e() 1 7.673e-05 9.026e-05 0.0001103 0.00% FabArrayBase::getCPC() 41 7.748e-05 8.703e-05 9.825e-05 0.00% Castro::finalize_advance() 10 6.019e-05 6.642e-05 7.151e-05 0.00% Amr::writeSmallPlotFile() 1 3.064e-05 5.094e-05 6.039e-05 0.00% Castro::enforce_speed_limit() 62 2.493e-05 3.003e-05 3.387e-05 0.00% FabArrayBase::CPC::define() 2 2.24e-05 2.596e-05 3.005e-05 0.00% Gravity::swapTimeLevels() 10 5.411e-06 1.284e-05 1.749e-05 0.00% Castro::FluxRegCrseInit 10 5.772e-06 1.051e-05 1.432e-05 0.00% Castro::create_source_corrector() 10 6.602e-06 1.064e-05 1.378e-05 0.00% Amr::initSubcycle() 1 7.802e-06 9.422e-06 1.373e-05 0.00% Gravity::set_mass_offset() 10 6.48e-06 1.048e-05 1.274e-05 0.00% Castro::retry_advance_ctu() 10 4.161e-06 6.147e-06 8.021e-06 0.00% Castro::FluxRegFineAdd() 10 1.804e-06 2.192e-06 3.079e-06 0.00% DistributionMapping::Distribute() 1 9.8e-07 1.16e-06 1.374e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-19-g11cd801494b6) finalized