MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-23-g0a50776a7239) initialized Starting run at 16:22:53 UTC on 2022-05-17. Successfully read inputs file ... Castro git describe: 22.05-21-ge3a5a8d60 AMReX git describe: 22.05-23-g0a50776a7 Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013336451 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362626608 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.337047348 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337009979 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336219754 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.335543124 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342676688 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.332067336 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.332585236 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.332415889 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.332510972 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009652819 seconds Ending run at 16:22:57 UTC on 2022-05-17. Run time = 3.573582947 Run time without initialization = 3.395356369 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.571 ... 3.573 ... 3.574 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1239 2.3563 2.4404 68.29% Gravity::make_radial_gravity() 21 0.345 0.3586 0.3838 10.74% Castro::do_advance_ctu() 10 0.05502 0.14 0.374 10.47% FabArray::ParallelCopy_finish() 41 0.03075 0.05635 0.1312 3.67% Castro::initData() 1 0.03793 0.07858 0.1156 3.24% Castro::estTimeStep() 21 0.02679 0.0626 0.1012 2.83% FabArray::setVal() 143 0.04755 0.06689 0.07252 2.03% Castro::reset_internal_energy(Fab) 1008 0.04882 0.05048 0.05176 1.45% FabArray::ParallelCopy_nowait() 41 0.02574 0.04328 0.04855 1.36% StateData::FillBoundary(geom) 41 0.03524 0.04156 0.04632 1.30% Castro::normalize_species() 62 0.0407 0.04198 0.04299 1.20% FillPatchIterator::Initialize 41 0.02018 0.03246 0.0367 1.03% Gravity::interpolate_monopole_grav() 21 0.02684 0.02769 0.02796 0.78% Castro::construct_new_gravity_source() 10 0.01782 0.02283 0.02416 0.68% Castro::expand_state() 10 0.00961 0.01869 0.02152 0.60% Castro::computeTemp() 63 0.01816 0.01914 0.01995 0.56% Castro::initialize_do_advance() 10 0.009017 0.01658 0.01957 0.55% MultiFab::Saxpy() 20 0.008678 0.01433 0.01632 0.46% FabArray::setDomainBndry() 41 0.004902 0.01202 0.01587 0.44% VisMF::Write(FabArray) 2 0.01133 0.01198 0.01403 0.39% Gravity::get_new_grav_vector() 11 0.008581 0.01143 0.01278 0.36% MultiFab::contains_nan() 20 0.009523 0.01116 0.01246 0.35% Amr::writePlotFile() 2 0.009168 0.01122 0.01197 0.34% Castro::construct_old_gravity_source() 10 0.004897 0.01005 0.01178 0.33% Gravity::get_old_grav_vector() 10 0.005651 0.009643 0.01116 0.31% Castro::initialize_advance() 10 0.003195 0.008835 0.009846 0.28% Castro::enforce_min_density() 62 0.006119 0.006765 0.007331 0.21% Castro::construct_new_source() 50 0.00487 0.00651 0.007256 0.20% Castro::initMFs() 1 0.005592 0.005934 0.007068 0.20% main() 1 0.003449 0.005227 0.00565 0.16% StateData::define() 4 0.004634 0.00479 0.005175 0.14% Castro::swap_state_time_levels() 10 0.002894 0.003703 0.003945 0.11% Castro::buildMetrics() 1 0.00133 0.001374 0.001501 0.04% Amr::coarseTimeStep() 10 0.000351 0.0006548 0.001472 0.04% Castro::finalize_do_advance() 10 0.0005415 0.001029 0.001261 0.04% Amr::timeStep() 10 0.0001827 0.0002436 0.0004698 0.01% Amr::InitAmr() 1 0.0002549 0.0002784 0.0003726 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003232 0.0003369 0.0003625 0.01% Castro::clean_state() 62 0.0001552 0.0001737 0.0002029 0.01% StateDataPhysBCFunct::() 41 0.0001223 0.0001476 0.0001959 0.01% Castro::enforce_consistent_e() 1 7.752e-05 9.29e-05 0.0001344 0.00% DistributionMapping::LeastUsedCPUs() 1 6.423e-06 0.0001012 0.0001274 0.00% FillPatchSingleLevel 41 6.767e-05 7.757e-05 0.0001028 0.00% Castro::construct_old_source() 50 3.979e-05 7.611e-05 9.653e-05 0.00% Castro::do_new_sources() 10 4.531e-05 6.98e-05 9.079e-05 0.00% Castro::Castro() 1 5.021e-05 7.196e-05 9.043e-05 0.00% Amr::FinalizeInit() 1 3.612e-06 1.41e-05 8.249e-05 0.00% FabArray::ParallelCopy() 41 6.022e-05 7.316e-05 8.023e-05 0.00% Castro::do_old_sources() 10 4.566e-05 6.782e-05 7.77e-05 0.00% FabArrayBase::getCPC() 41 5.302e-05 6.365e-05 7.578e-05 0.00% Castro::subcycle_advance_ctu() 10 4.906e-05 5.84e-05 7.317e-05 0.00% Castro::finalize_advance() 10 4.631e-05 5.313e-05 7.149e-05 0.00% Amr::writeSmallPlotFile() 1 2.558e-05 5.029e-05 6.977e-05 0.00% Castro::construct_old_gravity() 10 3.64e-05 5.539e-05 6.852e-05 0.00% Castro::construct_new_gravity() 10 3.804e-05 4.798e-05 5.755e-05 0.00% Castro::apply_source_to_state() 20 4.167e-05 4.922e-05 5.413e-05 0.00% Castro::advance() 10 3.212e-05 4.139e-05 4.48e-05 0.00% FabArrayBase::CPC::define() 2 2.448e-05 2.869e-05 3.623e-05 0.00% Castro::enforce_speed_limit() 62 2.426e-05 2.85e-05 3.285e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.557e-05 2.236e-05 3.022e-05 0.00% Castro::check_for_nan() 20 1.993e-05 2.401e-05 2.883e-05 0.00% Amr::defBaseLevel() 1 2.218e-05 2.449e-05 2.644e-05 0.00% Gravity::swapTimeLevels() 10 7.986e-06 1.214e-05 1.677e-05 0.00% Castro::create_source_corrector() 10 6.595e-06 1.114e-05 1.444e-05 0.00% Gravity::set_mass_offset() 10 7.039e-06 1.047e-05 1.326e-05 0.00% Castro::post_timestep() 10 9.292e-06 1.071e-05 1.32e-05 0.00% Castro::FluxRegCrseInit 10 6.785e-06 9.339e-06 1.288e-05 0.00% Castro::post_init() 1 8.852e-06 9.701e-06 1.198e-05 0.00% Castro::computeNewDt() 9 7.465e-06 9.049e-06 1.182e-05 0.00% Amr::initSubcycle() 1 8.216e-06 8.678e-06 9.514e-06 0.00% Castro::computeInitialDt() 2 3.252e-06 4.465e-06 8.549e-06 0.00% Castro::retry_advance_ctu() 10 3.872e-06 5.724e-06 7.322e-06 0.00% Amr::InitializeInit() 1 1.97e-06 3.274e-06 6.226e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.467e-06 4.189e-06 5.745e-06 0.00% Castro::post_regrid() 1 2.079e-06 3.251e-06 4.113e-06 0.00% Amr::init() 1 1.859e-06 2.291e-06 3.096e-06 0.00% Castro::FluxRegFineAdd() 10 1.57e-06 2.078e-06 2.719e-06 0.00% Amr::initialInit() 1 1.186e-06 1.554e-06 2.322e-06 0.00% DistributionMapping::Distribute() 1 9.13e-07 1.043e-06 1.147e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.571 3.573 3.574 100.00% Amr::coarseTimeStep() 10 3.38 3.38 3.38 94.58% Amr::timeStep() 10 3.369 3.371 3.371 94.34% Castro::advance() 10 3.354 3.354 3.354 93.87% Castro::subcycle_advance_ctu() 10 3.281 3.287 3.307 92.54% Castro::do_advance_ctu() 10 3.281 3.287 3.307 92.54% Castro::construct_ctu_hydro_source() 10 2.124 2.356 2.44 68.29% Gravity::make_radial_gravity() 21 0.345 0.3586 0.3838 10.74% Castro::construct_old_gravity() 10 0.2045 0.2169 0.2366 6.62% Gravity::get_old_grav_vector() 10 0.2037 0.2161 0.236 6.60% Gravity::get_new_grav_vector() 11 0.2302 0.2321 0.2333 6.53% FillPatchIterator::Initialize 41 0.173 0.1861 0.2191 6.13% Castro::construct_new_gravity() 10 0.2049 0.2065 0.2076 5.81% FillPatchSingleLevel 41 0.1214 0.1416 0.194 5.43% Amr::init() 1 0.1777 0.1778 0.1778 4.98% Castro::initialize_do_advance() 10 0.1606 0.1692 0.1742 4.87% Amr::initialInit() 1 0.1642 0.1643 0.1645 4.60% FabArray::ParallelCopy() 41 0.07837 0.0998 0.1571 4.40% Amr::InitializeInit() 1 0.05658 0.09775 0.1356 3.80% Amr::defBaseLevel() 1 0.05658 0.09775 0.1356 3.80% Castro::expand_state() 10 0.1106 0.1219 0.1331 3.72% FabArray::ParallelCopy_finish() 41 0.03075 0.05635 0.1312 3.67% Castro::initData() 1 0.04205 0.08282 0.1211 3.39% Castro::clean_state() 62 0.1137 0.1179 0.1209 3.38% Amr::FinalizeInit() 1 0.0287 0.06658 0.1076 3.01% Castro::estTimeStep() 21 0.02679 0.0626 0.1012 2.83% Castro::computeInitialDt() 2 0.001738 0.0396 0.0808 2.26% Castro::initialize_advance() 10 0.04646 0.06714 0.07262 2.03% FabArray::setVal() 143 0.04755 0.06689 0.07252 2.03% Castro::computeTemp() 63 0.06731 0.06996 0.07204 2.02% Castro::do_new_sources() 10 0.05175 0.06279 0.06606 1.85% Castro::reset_internal_energy(MultiFab) 63 0.04914 0.05082 0.0521 1.46% Castro::reset_internal_energy(Fab) 1008 0.04882 0.05048 0.05176 1.45% Castro::do_old_sources() 10 0.0333 0.04584 0.0496 1.39% FabArray::ParallelCopy_nowait() 41 0.02584 0.04338 0.04865 1.36% StateDataPhysBCFunct::() 41 0.03536 0.04171 0.04647 1.30% StateData::FillBoundary(geom) 41 0.03524 0.04156 0.04632 1.30% Castro::normalize_species() 62 0.0407 0.04198 0.04299 1.20% Castro::construct_new_source() 50 0.02269 0.02934 0.03098 0.87% Gravity::interpolate_monopole_grav() 21 0.02684 0.02769 0.02796 0.78% Castro::post_init() 1 0.02606 0.02628 0.02642 0.74% Castro::construct_new_gravity_source() 10 0.01782 0.02283 0.02416 0.68% Amr::writePlotFile() 2 0.02309 0.02321 0.02335 0.65% Castro::post_timestep() 10 0.01548 0.0163 0.01671 0.47% Castro::apply_source_to_state() 20 0.00872 0.01438 0.01637 0.46% MultiFab::Saxpy() 20 0.008678 0.01433 0.01632 0.46% FabArray::setDomainBndry() 41 0.004902 0.01202 0.01587 0.44% VisMF::Write(FabArray) 2 0.01133 0.01198 0.01403 0.39% Castro::check_for_nan() 20 0.009545 0.01118 0.01248 0.35% MultiFab::contains_nan() 20 0.009523 0.01116 0.01246 0.35% Castro::construct_old_source() 50 0.004936 0.01013 0.01187 0.33% Castro::construct_old_gravity_source() 10 0.004897 0.01005 0.01178 0.33% Castro::Castro() 1 0.00967 0.00999 0.01084 0.30% Castro::computeNewDt() 9 0.00728 0.007845 0.009215 0.26% Castro::enforce_min_density() 62 0.006119 0.006765 0.007331 0.21% Castro::initMFs() 1 0.005592 0.005934 0.007068 0.20% AmrLevel::AmrLevel(dm) 1 0.004654 0.004812 0.005199 0.15% StateData::define() 4 0.004634 0.00479 0.005175 0.14% Castro::swap_state_time_levels() 10 0.002894 0.003703 0.003945 0.11% Castro::post_regrid() 1 0.001506 0.001605 0.001814 0.05% Castro::buildMetrics() 1 0.001447 0.0015 0.001645 0.05% Castro::finalize_do_advance() 10 0.0005415 0.001029 0.001261 0.04% Amr::InitAmr() 1 0.0002632 0.0002871 0.0003808 0.01% Castro::enforce_consistent_e() 1 7.752e-05 9.29e-05 0.0001344 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 1.094e-05 0.0001064 0.0001342 0.00% DistributionMapping::LeastUsedCPUs() 1 6.423e-06 0.0001012 0.0001274 0.00% FabArrayBase::getCPC() 41 7.936e-05 9.234e-05 0.000107 0.00% Castro::finalize_advance() 10 5.535e-05 6.455e-05 8.678e-05 0.00% Amr::writeSmallPlotFile() 1 2.558e-05 5.029e-05 6.977e-05 0.00% FabArrayBase::CPC::define() 2 2.448e-05 2.869e-05 3.623e-05 0.00% Castro::enforce_speed_limit() 62 2.426e-05 2.85e-05 3.285e-05 0.00% Gravity::swapTimeLevels() 10 7.986e-06 1.214e-05 1.677e-05 0.00% Castro::create_source_corrector() 10 6.595e-06 1.114e-05 1.444e-05 0.00% Gravity::set_mass_offset() 10 7.039e-06 1.047e-05 1.326e-05 0.00% Castro::FluxRegCrseInit 10 6.785e-06 9.339e-06 1.288e-05 0.00% Amr::initSubcycle() 1 8.216e-06 8.678e-06 9.514e-06 0.00% Castro::retry_advance_ctu() 10 3.872e-06 5.724e-06 7.322e-06 0.00% Castro::FluxRegFineAdd() 10 1.57e-06 2.078e-06 2.719e-06 0.00% DistributionMapping::Distribute() 1 9.13e-07 1.043e-06 1.147e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-23-g0a50776a7239) finalized