MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-23-g0a50776a7239) initialized Starting run at 18:24:07 UTC on 2022-05-17. Successfully read inputs file ... Castro git describe: 22.05-22-gbfc26edf7 AMReX git describe: 22.05-23-g0a50776a7 Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013605084 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.346705653 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.340599832 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.339292974 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.341363044 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.343027363 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.354452743 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.336311871 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.334178461 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.33475453 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.334077377 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009804154 seconds Ending run at 18:24:11 UTC on 2022-05-17. Run time = 3.607381241 Run time without initialization = 3.416638072 Average number of zones advanced per microsecond: 0.767 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.605 ... 3.607 ... 3.607 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0888 2.3732 2.4784 68.70% Castro::do_advance_ctu() 10 0.03348 0.1392 0.4259 11.81% Gravity::make_radial_gravity() 21 0.3375 0.351 0.3796 10.52% Castro::initData() 1 0.03796 0.08188 0.1244 3.45% FabArray::ParallelCopy_finish() 41 0.04427 0.06219 0.1241 3.44% Castro::estTimeStep() 21 0.02551 0.07279 0.1169 3.24% FabArray::setVal() 143 0.05798 0.06854 0.07112 1.97% Castro::reset_internal_energy(Fab) 1008 0.04875 0.05025 0.05164 1.43% FabArray::ParallelCopy_nowait() 41 0.02596 0.04332 0.04904 1.36% StateData::FillBoundary(geom) 41 0.03491 0.04145 0.04567 1.27% Castro::normalize_species() 62 0.04025 0.04174 0.04226 1.17% FillPatchIterator::Initialize 41 0.01964 0.03247 0.03673 1.02% Gravity::interpolate_monopole_grav() 21 0.02673 0.02765 0.02839 0.79% Castro::construct_new_gravity_source() 10 0.01845 0.02341 0.02457 0.68% Castro::expand_state() 10 0.009488 0.01908 0.02244 0.62% Castro::computeTemp() 63 0.01812 0.01931 0.0203 0.56% Castro::initialize_do_advance() 10 0.008445 0.01678 0.01838 0.51% MultiFab::Saxpy() 20 0.008621 0.01442 0.01655 0.46% VisMF::Write(FabArray) 2 0.01073 0.01201 0.01564 0.43% FabArray::setDomainBndry() 41 0.004968 0.0119 0.01509 0.42% Amr::writePlotFile() 2 0.007989 0.01152 0.01306 0.36% Gravity::get_new_grav_vector() 11 0.009109 0.01163 0.01285 0.36% MultiFab::contains_nan() 20 0.009641 0.01094 0.01198 0.33% Castro::construct_old_gravity_source() 10 0.004888 0.01006 0.01184 0.33% Castro::initialize_advance() 10 0.00693 0.01003 0.01155 0.32% Gravity::get_old_grav_vector() 10 0.005499 0.00985 0.01099 0.30% Castro::initMFs() 1 0.005502 0.006527 0.008444 0.23% Castro::enforce_min_density() 62 0.006089 0.006818 0.007165 0.20% Castro::construct_new_source() 50 0.004898 0.006545 0.00709 0.20% StateData::define() 4 0.004532 0.005248 0.006614 0.18% main() 1 0.003826 0.005384 0.005867 0.16% Castro::swap_state_time_levels() 10 0.002688 0.003661 0.003979 0.11% Castro::buildMetrics() 1 0.0013 0.001496 0.001896 0.05% Amr::coarseTimeStep() 10 0.0004692 0.0007829 0.001471 0.04% Castro::finalize_do_advance() 10 0.0005691 0.001213 0.001438 0.04% Amr::timeStep() 10 0.000168 0.0002341 0.0005169 0.01% Amr::InitAmr() 1 0.0002876 0.0003535 0.0004757 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003164 0.0003319 0.0003653 0.01% DistributionMapping::LeastUsedCPUs() 1 8.031e-06 0.000153 0.0002343 0.01% Castro::clean_state() 62 0.0001484 0.0001777 0.0001985 0.01% StateDataPhysBCFunct::() 41 0.0001085 0.0001375 0.0001573 0.00% Castro::enforce_consistent_e() 1 7.948e-05 9.045e-05 0.0001055 0.00% Castro::construct_old_source() 50 4.506e-05 7.546e-05 9.336e-05 0.00% Castro::do_new_sources() 10 4.882e-05 7.035e-05 8.775e-05 0.00% FabArray::ParallelCopy() 41 6.532e-05 7.229e-05 8.67e-05 0.00% Castro::do_old_sources() 10 4.594e-05 6.757e-05 8.181e-05 0.00% Amr::FinalizeInit() 1 3.932e-06 1.395e-05 7.946e-05 0.00% FillPatchSingleLevel 41 6.282e-05 6.959e-05 7.733e-05 0.00% Castro::Castro() 1 5.12e-05 5.827e-05 7.702e-05 0.00% FabArrayBase::getCPC() 41 5.276e-05 5.806e-05 7.137e-05 0.00% Amr::writeSmallPlotFile() 1 3.067e-05 5.834e-05 6.763e-05 0.00% Castro::construct_new_gravity() 10 4.309e-05 5.097e-05 6.558e-05 0.00% Castro::construct_old_gravity() 10 3.946e-05 5.452e-05 6.136e-05 0.00% Castro::advance() 10 3.247e-05 4.493e-05 5.943e-05 0.00% Castro::finalize_advance() 10 5.08e-05 5.447e-05 5.751e-05 0.00% Castro::subcycle_advance_ctu() 10 4.214e-05 5.046e-05 5.448e-05 0.00% Castro::apply_source_to_state() 20 3.916e-05 4.706e-05 5.147e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.291e-05 2.316e-05 4.599e-05 0.00% Castro::post_timestep() 10 9.652e-06 2.171e-05 4.019e-05 0.00% Amr::defBaseLevel() 1 2.484e-05 3.221e-05 3.947e-05 0.00% Castro::check_for_nan() 20 2.176e-05 2.557e-05 3.371e-05 0.00% Castro::enforce_speed_limit() 62 2.546e-05 2.877e-05 3.29e-05 0.00% FabArrayBase::CPC::define() 2 2.257e-05 2.617e-05 2.968e-05 0.00% Gravity::set_mass_offset() 10 6.983e-06 1.642e-05 2.949e-05 0.00% Gravity::swapTimeLevels() 10 8.306e-06 1.334e-05 1.703e-05 0.00% Castro::post_init() 1 8.178e-06 1.022e-05 1.473e-05 0.00% Amr::initSubcycle() 1 8.187e-06 1.048e-05 1.464e-05 0.00% Castro::computeNewDt() 9 6.759e-06 9.752e-06 1.236e-05 0.00% Castro::create_source_corrector() 10 6.709e-06 9.371e-06 1.177e-05 0.00% Castro::FluxRegCrseInit 10 6.253e-06 9.675e-06 1.153e-05 0.00% Amr::InitializeInit() 1 2.064e-06 2.977e-06 7.292e-06 0.00% Castro::retry_advance_ctu() 10 4.127e-06 5.84e-06 6.894e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.134e-06 4.6e-06 5.424e-06 0.00% Castro::computeInitialDt() 2 2.553e-06 4.063e-06 5.061e-06 0.00% Castro::post_regrid() 1 1.628e-06 3.299e-06 4.698e-06 0.00% Castro::FluxRegFineAdd() 10 1.809e-06 2.102e-06 2.546e-06 0.00% Amr::init() 1 1.905e-06 2.287e-06 2.523e-06 0.00% Amr::initialInit() 1 1.339e-06 1.603e-06 2.054e-06 0.00% DistributionMapping::Distribute() 1 1.008e-06 1.206e-06 1.46e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.605 3.607 3.607 100.00% Amr::coarseTimeStep() 10 3.401 3.401 3.401 94.28% Amr::timeStep() 10 3.388 3.39 3.392 94.03% Castro::advance() 10 3.372 3.373 3.373 93.51% Castro::subcycle_advance_ctu() 10 3.298 3.302 3.309 91.73% Castro::do_advance_ctu() 10 3.298 3.302 3.309 91.73% Castro::construct_ctu_hydro_source() 10 2.089 2.373 2.478 68.70% Gravity::make_radial_gravity() 21 0.3375 0.351 0.3796 10.52% Castro::construct_old_gravity() 10 0.1998 0.2116 0.2334 6.47% Gravity::get_new_grav_vector() 11 0.2287 0.2309 0.233 6.46% Gravity::get_old_grav_vector() 10 0.1988 0.2107 0.2329 6.46% FillPatchIterator::Initialize 41 0.1865 0.1917 0.211 5.85% Castro::construct_new_gravity() 10 0.2027 0.2042 0.2059 5.71% Amr::init() 1 0.1901 0.1903 0.1903 5.28% FillPatchSingleLevel 41 0.1356 0.1473 0.1864 5.17% Castro::initialize_do_advance() 10 0.1611 0.1746 0.1828 5.07% Amr::initialInit() 1 0.1762 0.1766 0.1768 4.90% FabArray::ParallelCopy() 41 0.09272 0.1057 0.1503 4.17% Amr::InitializeInit() 1 0.05555 0.1013 0.1467 4.07% Amr::defBaseLevel() 1 0.05555 0.1013 0.1467 4.07% Castro::expand_state() 10 0.1148 0.1275 0.1343 3.72% Castro::initData() 1 0.04189 0.08578 0.128 3.55% FabArray::ParallelCopy_finish() 41 0.04427 0.06219 0.1241 3.44% Amr::FinalizeInit() 1 0.02947 0.07535 0.1212 3.36% Castro::clean_state() 62 0.1129 0.1177 0.1198 3.32% Castro::estTimeStep() 21 0.02551 0.07279 0.1169 3.24% Castro::computeInitialDt() 2 0.001596 0.04722 0.09301 2.58% Castro::initialize_advance() 10 0.06251 0.07084 0.07443 2.06% Castro::computeTemp() 63 0.06721 0.06989 0.07145 1.98% FabArray::setVal() 143 0.05798 0.06854 0.07112 1.97% Castro::do_new_sources() 10 0.05208 0.06338 0.06631 1.84% Castro::reset_internal_energy(MultiFab) 63 0.04909 0.05058 0.052 1.44% Castro::reset_internal_energy(Fab) 1008 0.04875 0.05025 0.05164 1.43% FabArray::ParallelCopy_nowait() 41 0.02606 0.04341 0.04912 1.36% Castro::do_old_sources() 10 0.03277 0.04565 0.04893 1.36% StateDataPhysBCFunct::() 41 0.03502 0.04159 0.04583 1.27% StateData::FillBoundary(geom) 41 0.03491 0.04145 0.04567 1.27% Castro::normalize_species() 62 0.04025 0.04174 0.04226 1.17% Castro::construct_new_source() 50 0.02335 0.02995 0.03148 0.87% Gravity::interpolate_monopole_grav() 21 0.02673 0.02765 0.02839 0.79% Castro::post_init() 1 0.027 0.02741 0.02767 0.77% Castro::construct_new_gravity_source() 10 0.01845 0.02341 0.02457 0.68% Amr::writePlotFile() 2 0.02336 0.02353 0.02379 0.66% Castro::post_timestep() 10 0.01584 0.01669 0.0184 0.51% Castro::apply_source_to_state() 20 0.008666 0.01446 0.0166 0.46% MultiFab::Saxpy() 20 0.008621 0.01442 0.01655 0.46% VisMF::Write(FabArray) 2 0.01073 0.01201 0.01564 0.43% FabArray::setDomainBndry() 41 0.004968 0.0119 0.01509 0.42% Castro::Castro() 1 0.008833 0.01001 0.01211 0.34% Castro::check_for_nan() 20 0.009663 0.01096 0.01201 0.33% MultiFab::contains_nan() 20 0.009641 0.01094 0.01198 0.33% Castro::construct_old_source() 50 0.004934 0.01013 0.01193 0.33% Castro::construct_old_gravity_source() 10 0.004888 0.01006 0.01184 0.33% Castro::computeNewDt() 9 0.006962 0.009742 0.01124 0.31% Castro::initMFs() 1 0.005502 0.006527 0.008444 0.23% Castro::enforce_min_density() 62 0.006089 0.006818 0.007165 0.20% AmrLevel::AmrLevel(dm) 1 0.004547 0.005271 0.006634 0.18% StateData::define() 4 0.004532 0.005248 0.006614 0.18% Castro::swap_state_time_levels() 10 0.002688 0.003661 0.003979 0.11% Castro::buildMetrics() 1 0.001411 0.001641 0.002114 0.06% Castro::post_regrid() 1 0.001533 0.00163 0.001887 0.05% Castro::finalize_do_advance() 10 0.0005691 0.001213 0.001438 0.04% Amr::InitAmr() 1 0.0002967 0.000364 0.0004899 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.419e-05 0.0001588 0.0002408 0.01% DistributionMapping::LeastUsedCPUs() 1 8.031e-06 0.000153 0.0002343 0.01% Castro::enforce_consistent_e() 1 7.948e-05 9.045e-05 0.0001055 0.00% FabArrayBase::getCPC() 41 7.831e-05 8.423e-05 9.874e-05 0.00% Castro::finalize_advance() 10 6.044e-05 6.624e-05 7.07e-05 0.00% Amr::writeSmallPlotFile() 1 3.067e-05 5.834e-05 6.763e-05 0.00% Castro::enforce_speed_limit() 62 2.546e-05 2.877e-05 3.29e-05 0.00% FabArrayBase::CPC::define() 2 2.257e-05 2.617e-05 2.968e-05 0.00% Gravity::set_mass_offset() 10 6.983e-06 1.642e-05 2.949e-05 0.00% Gravity::swapTimeLevels() 10 8.306e-06 1.334e-05 1.703e-05 0.00% Amr::initSubcycle() 1 8.187e-06 1.048e-05 1.464e-05 0.00% Castro::create_source_corrector() 10 6.709e-06 9.371e-06 1.177e-05 0.00% Castro::FluxRegCrseInit 10 6.253e-06 9.675e-06 1.153e-05 0.00% Castro::retry_advance_ctu() 10 4.127e-06 5.84e-06 6.894e-06 0.00% Castro::FluxRegFineAdd() 10 1.809e-06 2.102e-06 2.546e-06 0.00% DistributionMapping::Distribute() 1 1.008e-06 1.206e-06 1.46e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-23-g0a50776a7239) finalized