MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-22-g843a7dff2662) initialized Starting run at 05:38:30 UTC on 2022-05-17. Successfully read inputs file ... Castro git describe: 22.05-21-gd98f2bb40 AMReX git describe: 22.05-22-g843a7dff2 Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013668401 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365844078 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338211046 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337128928 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335414602 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.346311439 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.340178872 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.330527673 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.331095672 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.330772397 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.331417102 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009396599 seconds Ending run at 05:38:34 UTC on 2022-05-17. Run time = 3.601170747 Run time without initialization = 3.401441204 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.599 ... 3.601 ... 3.601 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0618 2.3365 2.4468 67.94% Castro::do_advance_ctu() 10 0.03039 0.1472 0.4248 11.80% Gravity::make_radial_gravity() 21 0.3401 0.3555 0.3775 10.48% Castro::initData() 1 0.03845 0.08335 0.1355 3.76% Castro::estTimeStep() 21 0.02863 0.08205 0.1312 3.64% FabArray::ParallelCopy_finish() 41 0.041 0.06088 0.1047 2.91% FabArray::setVal() 143 0.06802 0.07211 0.07433 2.06% Castro::reset_internal_energy(Fab) 1008 0.04548 0.04936 0.05182 1.44% StateData::FillBoundary(geom) 41 0.03598 0.04315 0.04982 1.38% FabArray::ParallelCopy_nowait() 41 0.03051 0.04421 0.04919 1.37% Castro::normalize_species() 62 0.03982 0.04174 0.04329 1.20% FillPatchIterator::Initialize 41 0.02108 0.03278 0.03738 1.04% Gravity::interpolate_monopole_grav() 21 0.02532 0.02728 0.0283 0.79% Castro::construct_new_gravity_source() 10 0.02391 0.02441 0.02536 0.70% Castro::expand_state() 10 0.01274 0.01938 0.02293 0.64% Castro::computeTemp() 63 0.01741 0.01898 0.02011 0.56% Castro::initialize_do_advance() 10 0.01476 0.0175 0.01899 0.53% MultiFab::Saxpy() 20 0.01231 0.01522 0.01688 0.47% FabArray::setDomainBndry() 41 0.006377 0.01219 0.0152 0.42% VisMF::Write(FabArray) 2 0.01066 0.01145 0.01393 0.39% Gravity::get_new_grav_vector() 11 0.009308 0.01182 0.01306 0.36% MultiFab::contains_nan() 20 0.009876 0.01135 0.01275 0.35% Amr::writePlotFile() 2 0.009357 0.01181 0.01271 0.35% Castro::construct_old_gravity_source() 10 0.00743 0.01085 0.01236 0.34% Gravity::get_old_grav_vector() 10 0.00623 0.009803 0.01142 0.32% Castro::initialize_advance() 10 0.01002 0.01069 0.01092 0.30% Castro::enforce_min_density() 62 0.006249 0.006789 0.0074 0.21% Castro::construct_new_source() 50 0.005075 0.006576 0.007229 0.20% Castro::initMFs() 1 0.005529 0.005981 0.006225 0.17% main() 1 0.003519 0.005086 0.005566 0.15% StateData::define() 4 0.004488 0.004819 0.005008 0.14% Castro::swap_state_time_levels() 10 0.002977 0.003913 0.004354 0.12% Amr::coarseTimeStep() 10 0.0003511 0.0007473 0.002313 0.06% Castro::finalize_do_advance() 10 0.001075 0.00132 0.001486 0.04% Castro::buildMetrics() 1 0.001293 0.001395 0.001469 0.04% Amr::timeStep() 10 0.0001676 0.0002271 0.0004686 0.01% Amr::InitAmr() 1 0.0002599 0.0003034 0.0004518 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002874 0.0003017 0.0003175 0.01% DistributionMapping::LeastUsedCPUs() 1 1.016e-05 0.0001969 0.000252 0.01% Castro::clean_state() 62 0.0001547 0.0001704 0.0001931 0.01% StateDataPhysBCFunct::() 41 0.0001222 0.0001459 0.0001749 0.00% Castro::enforce_consistent_e() 1 8.474e-05 9.095e-05 0.0001084 0.00% Castro::Castro() 1 5.602e-05 7.037e-05 9.595e-05 0.00% Castro::construct_old_source() 50 4.602e-05 7.838e-05 9.483e-05 0.00% Amr::FinalizeInit() 1 3.786e-06 1.62e-05 9.278e-05 0.00% FabArray::ParallelCopy() 41 6.507e-05 7.465e-05 8.557e-05 0.00% FillPatchSingleLevel 41 6.8e-05 7.366e-05 8.491e-05 0.00% Castro::do_new_sources() 10 4.667e-05 6.814e-05 8.458e-05 0.00% Castro::do_old_sources() 10 4.291e-05 6.987e-05 8.389e-05 0.00% FabArrayBase::getCPC() 41 4.298e-05 5.65e-05 7.304e-05 0.00% Amr::writeSmallPlotFile() 1 3.231e-05 4.952e-05 7.049e-05 0.00% Castro::construct_old_gravity() 10 4.086e-05 5.669e-05 6.862e-05 0.00% Castro::subcycle_advance_ctu() 10 3.882e-05 5.267e-05 6.416e-05 0.00% Castro::apply_source_to_state() 20 3.929e-05 5.027e-05 6.177e-05 0.00% Castro::construct_new_gravity() 10 3.974e-05 4.766e-05 5.543e-05 0.00% Castro::finalize_advance() 10 4.587e-05 4.949e-05 5.163e-05 0.00% Castro::advance() 10 3.097e-05 3.792e-05 4.789e-05 0.00% Castro::enforce_speed_limit() 62 2.015e-05 2.729e-05 3.546e-05 0.00% FabArrayBase::CPC::define() 2 2.227e-05 2.694e-05 3.343e-05 0.00% Amr::defBaseLevel() 1 2.519e-05 2.816e-05 3.301e-05 0.00% Castro::check_for_nan() 20 2.139e-05 2.437e-05 2.607e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.255e-05 1.693e-05 2.454e-05 0.00% Castro::post_timestep() 10 8.676e-06 1.236e-05 1.792e-05 0.00% Gravity::swapTimeLevels() 10 7.203e-06 1.289e-05 1.744e-05 0.00% Castro::create_source_corrector() 10 8.042e-06 1.124e-05 1.361e-05 0.00% Gravity::set_mass_offset() 10 7.059e-06 9.988e-06 1.246e-05 0.00% Castro::post_init() 1 8.135e-06 9.887e-06 1.244e-05 0.00% Castro::FluxRegCrseInit 10 6.513e-06 9.553e-06 1.138e-05 0.00% Castro::computeNewDt() 9 7.649e-06 9.054e-06 1.121e-05 0.00% Amr::initSubcycle() 1 8.059e-06 8.921e-06 9.509e-06 0.00% Amr::initialInit() 1 1.085e-06 2.054e-06 6.986e-06 0.00% Amr::InitializeInit() 1 1.939e-06 2.747e-06 6.623e-06 0.00% Castro::retry_advance_ctu() 10 4.309e-06 5.513e-06 6.239e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.617e-06 4.853e-06 5.987e-06 0.00% Castro::post_regrid() 1 2.171e-06 3.359e-06 5.543e-06 0.00% Castro::computeInitialDt() 2 3.711e-06 3.949e-06 4.364e-06 0.00% Castro::FluxRegFineAdd() 10 1.694e-06 2.206e-06 2.527e-06 0.00% Amr::init() 1 1.942e-06 2.144e-06 2.428e-06 0.00% DistributionMapping::Distribute() 1 9.09e-07 1.242e-06 1.783e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.599 3.601 3.601 100.00% Amr::coarseTimeStep() 10 3.387 3.387 3.387 94.04% Amr::timeStep() 10 3.376 3.377 3.378 93.80% Castro::advance() 10 3.361 3.361 3.361 93.34% Castro::subcycle_advance_ctu() 10 3.285 3.288 3.293 91.44% Castro::do_advance_ctu() 10 3.285 3.288 3.293 91.44% Castro::construct_ctu_hydro_source() 10 2.062 2.337 2.447 67.94% Gravity::make_radial_gravity() 21 0.3401 0.3555 0.3775 10.48% Gravity::get_new_grav_vector() 11 0.2322 0.2337 0.2352 6.53% Castro::construct_old_gravity() 10 0.2006 0.2136 0.2295 6.37% Gravity::get_old_grav_vector() 10 0.1998 0.2127 0.2285 6.35% Castro::construct_new_gravity() 10 0.2055 0.207 0.2082 5.78% FillPatchIterator::Initialize 41 0.1831 0.1936 0.2039 5.66% Amr::init() 1 0.1991 0.1993 0.1993 5.54% Amr::initialInit() 1 0.1852 0.1855 0.1857 5.16% Castro::initialize_do_advance() 10 0.1635 0.176 0.185 5.14% FillPatchSingleLevel 41 0.1319 0.1486 0.1762 4.89% Amr::InitializeInit() 1 0.05652 0.1026 0.1555 4.32% Amr::defBaseLevel() 1 0.05651 0.1026 0.1555 4.32% Castro::initData() 1 0.04277 0.08749 0.1397 3.88% FabArray::ParallelCopy() 41 0.08959 0.1053 0.1371 3.81% Castro::expand_state() 10 0.1197 0.1278 0.1354 3.76% Castro::estTimeStep() 21 0.02863 0.08205 0.1312 3.64% Amr::FinalizeInit() 1 0.03011 0.08292 0.1291 3.58% Castro::clean_state() 62 0.1094 0.1164 0.1213 3.37% FabArray::ParallelCopy_finish() 41 0.041 0.06088 0.1047 2.91% Castro::computeInitialDt() 2 0.001716 0.05465 0.1008 2.80% Castro::initialize_advance() 10 0.06804 0.07292 0.07577 2.10% FabArray::setVal() 143 0.06802 0.07211 0.07433 2.06% Castro::computeTemp() 63 0.06344 0.06864 0.07221 2.01% Castro::do_new_sources() 10 0.06525 0.06577 0.06619 1.84% Castro::reset_internal_energy(MultiFab) 63 0.04577 0.04967 0.05214 1.45% Castro::reset_internal_energy(Fab) 1008 0.04548 0.04936 0.05182 1.44% Castro::do_old_sources() 10 0.03847 0.04693 0.05029 1.40% StateDataPhysBCFunct::() 41 0.0361 0.0433 0.05 1.39% StateData::FillBoundary(geom) 41 0.03598 0.04315 0.04982 1.38% FabArray::ParallelCopy_nowait() 41 0.03058 0.0443 0.04928 1.37% Castro::normalize_species() 62 0.03982 0.04174 0.04329 1.20% Castro::construct_new_source() 50 0.03011 0.03099 0.03186 0.88% Gravity::interpolate_monopole_grav() 21 0.02532 0.02728 0.0283 0.79% Castro::post_init() 1 0.02721 0.02748 0.02773 0.77% Castro::construct_new_gravity_source() 10 0.02391 0.02441 0.02536 0.70% Amr::writePlotFile() 2 0.02311 0.02326 0.02362 0.66% Castro::apply_source_to_state() 20 0.01235 0.01527 0.01694 0.47% MultiFab::Saxpy() 20 0.01231 0.01522 0.01688 0.47% Castro::post_timestep() 10 0.01437 0.01567 0.0165 0.46% FabArray::setDomainBndry() 41 0.006377 0.01219 0.0152 0.42% VisMF::Write(FabArray) 2 0.01066 0.01145 0.01393 0.39% Castro::check_for_nan() 20 0.0099 0.01138 0.01277 0.35% MultiFab::contains_nan() 20 0.009876 0.01135 0.01275 0.35% Castro::construct_old_source() 50 0.007476 0.01093 0.01246 0.35% Castro::construct_old_gravity_source() 10 0.00743 0.01085 0.01236 0.34% Castro::Castro() 1 0.008819 0.01 0.01057 0.29% Castro::computeNewDt() 9 0.007076 0.007817 0.009318 0.26% Castro::enforce_min_density() 62 0.006249 0.006789 0.0074 0.21% Castro::initMFs() 1 0.005529 0.005981 0.006225 0.17% AmrLevel::AmrLevel(dm) 1 0.004503 0.004835 0.005026 0.14% StateData::define() 4 0.004488 0.004819 0.005008 0.14% Castro::swap_state_time_levels() 10 0.002977 0.003913 0.004354 0.12% Castro::post_regrid() 1 0.001554 0.001679 0.001845 0.05% Castro::buildMetrics() 1 0.001407 0.001533 0.001617 0.04% Castro::finalize_do_advance() 10 0.001075 0.00132 0.001486 0.04% Amr::InitAmr() 1 0.0002682 0.0003123 0.0004613 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.749e-05 0.000203 0.0002587 0.01% DistributionMapping::LeastUsedCPUs() 1 1.016e-05 0.0001969 0.000252 0.01% Castro::enforce_consistent_e() 1 8.474e-05 9.095e-05 0.0001084 0.00% FabArrayBase::getCPC() 41 6.765e-05 8.344e-05 0.0001065 0.00% Amr::writeSmallPlotFile() 1 3.231e-05 4.952e-05 7.049e-05 0.00% Castro::finalize_advance() 10 5.423e-05 6.125e-05 6.44e-05 0.00% Castro::enforce_speed_limit() 62 2.015e-05 2.729e-05 3.546e-05 0.00% FabArrayBase::CPC::define() 2 2.227e-05 2.694e-05 3.343e-05 0.00% Gravity::swapTimeLevels() 10 7.203e-06 1.289e-05 1.744e-05 0.00% Castro::create_source_corrector() 10 8.042e-06 1.124e-05 1.361e-05 0.00% Gravity::set_mass_offset() 10 7.059e-06 9.988e-06 1.246e-05 0.00% Castro::FluxRegCrseInit 10 6.513e-06 9.553e-06 1.138e-05 0.00% Amr::initSubcycle() 1 8.059e-06 8.921e-06 9.509e-06 0.00% Castro::retry_advance_ctu() 10 4.309e-06 5.513e-06 6.239e-06 0.00% Castro::FluxRegFineAdd() 10 1.694e-06 2.206e-06 2.527e-06 0.00% DistributionMapping::Distribute() 1 9.09e-07 1.242e-06 1.783e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-22-g843a7dff2662) finalized