MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-23-g0a50776a7239) initialized Starting run at 05:38:13 UTC on 2022-05-18. Successfully read inputs file ... Castro git describe: 22.05-22-g2d25c3ccb AMReX git describe: 22.05-23-g0a50776a7 Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013919064 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.348391454 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339537423 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338507544 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.338634112 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.352909947 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.350328732 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.331406419 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.332082805 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.3313402 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.332888561 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010047303 seconds Ending run at 05:38:16 UTC on 2022-05-18. Run time = 3.604376543 Run time without initialization = 3.409321834 Average number of zones advanced per microsecond: 0.769 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.602 ... 3.604 ... 3.604 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0040 2.3485 2.4576 68.18% Castro::do_advance_ctu() 10 0.03001 0.1401 0.4887 13.56% Gravity::make_radial_gravity() 21 0.3394 0.3519 0.3833 10.63% Castro::initData() 1 0.04108 0.08401 0.1313 3.64% FabArray::ParallelCopy_finish() 41 0.04569 0.06341 0.1254 3.48% Castro::estTimeStep() 21 0.03032 0.08267 0.1225 3.40% FabArray::setVal() 143 0.05946 0.06903 0.07192 2.00% Castro::reset_internal_energy(Fab) 1008 0.04616 0.05 0.05197 1.44% FabArray::ParallelCopy_nowait() 41 0.0254 0.04375 0.04932 1.37% StateData::FillBoundary(geom) 41 0.03467 0.04283 0.04807 1.33% Castro::normalize_species() 62 0.03892 0.04165 0.04315 1.20% FillPatchIterator::Initialize 41 0.01889 0.03331 0.03691 1.02% Castro::construct_new_gravity_source() 10 0.01772 0.02401 0.02956 0.82% Gravity::interpolate_monopole_grav() 21 0.0257 0.02731 0.02788 0.77% Castro::expand_state() 10 0.009347 0.01964 0.02316 0.64% Castro::computeTemp() 63 0.01768 0.01914 0.01987 0.55% Castro::initialize_do_advance() 10 0.008291 0.01762 0.01949 0.54% MultiFab::Saxpy() 20 0.01018 0.01466 0.01618 0.45% FabArray::setDomainBndry() 41 0.006027 0.01263 0.01576 0.44% VisMF::Write(FabArray) 2 0.01112 0.0117 0.01424 0.40% Gravity::get_new_grav_vector() 11 0.008911 0.01194 0.01371 0.38% Amr::writePlotFile() 2 0.009959 0.01235 0.01295 0.36% Castro::construct_old_gravity_source() 10 0.00486 0.01016 0.01196 0.33% MultiFab::contains_nan() 20 0.01033 0.01112 0.01192 0.33% Castro::initialize_advance() 10 0.00991 0.01077 0.01161 0.32% Gravity::get_old_grav_vector() 10 0.005225 0.009756 0.01122 0.31% Castro::initMFs() 1 0.005479 0.006056 0.007326 0.20% Castro::enforce_min_density() 62 0.006113 0.006731 0.00713 0.20% Castro::construct_new_source() 50 0.00476 0.006473 0.007024 0.19% main() 1 0.003357 0.005218 0.006068 0.17% StateData::define() 4 0.004478 0.004838 0.005442 0.15% Castro::swap_state_time_levels() 10 0.002915 0.003819 0.004023 0.11% Amr::coarseTimeStep() 10 0.0004419 0.001351 0.003252 0.09% Castro::finalize_do_advance() 10 0.0005318 0.001325 0.00162 0.04% Castro::buildMetrics() 1 0.001283 0.001397 0.001599 0.04% Amr::timeStep() 10 0.0001699 0.0002317 0.0005136 0.01% Amr::InitAmr() 1 0.0002629 0.0002925 0.0003713 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002831 0.0002995 0.0003196 0.01% StateDataPhysBCFunct::() 41 0.0001474 0.0001686 0.0002183 0.01% Castro::clean_state() 62 0.0001353 0.0001575 0.0001734 0.00% DistributionMapping::LeastUsedCPUs() 1 8.821e-06 8.845e-05 0.0001201 0.00% Castro::enforce_consistent_e() 1 8.1e-05 8.66e-05 9.709e-05 0.00% Castro::do_new_sources() 10 3.825e-05 6.743e-05 9.507e-05 0.00% Castro::construct_old_source() 50 3.523e-05 7.354e-05 9.065e-05 0.00% FillPatchSingleLevel 41 6.195e-05 7.34e-05 8.606e-05 0.00% Castro::finalize_advance() 10 4.912e-05 5.858e-05 8.321e-05 0.00% Amr::FinalizeInit() 1 4.09e-06 1.436e-05 8.15e-05 0.00% FabArray::ParallelCopy() 41 5.19e-05 7.08e-05 7.922e-05 0.00% Castro::do_old_sources() 10 3.637e-05 6.622e-05 7.76e-05 0.00% Castro::Castro() 1 4.663e-05 6.423e-05 7.474e-05 0.00% Castro::subcycle_advance_ctu() 10 3.869e-05 5.517e-05 7.448e-05 0.00% Castro::construct_old_gravity() 10 4.002e-05 5.787e-05 7.022e-05 0.00% Amr::writeSmallPlotFile() 1 2.952e-05 4.941e-05 6.474e-05 0.00% FabArrayBase::getCPC() 41 4.735e-05 5.249e-05 5.904e-05 0.00% Castro::apply_source_to_state() 20 3.617e-05 4.69e-05 5.26e-05 0.00% Castro::construct_new_gravity() 10 3.849e-05 4.579e-05 4.957e-05 0.00% Castro::advance() 10 3.018e-05 4.134e-05 4.935e-05 0.00% Amr::defBaseLevel() 1 2.578e-05 2.939e-05 3.513e-05 0.00% FabArrayBase::CPC::define() 2 2.14e-05 2.641e-05 3.497e-05 0.00% Castro::enforce_speed_limit() 62 2.041e-05 2.619e-05 3.137e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.659e-05 2.036e-05 2.976e-05 0.00% Castro::post_timestep() 10 1.22e-05 1.935e-05 2.74e-05 0.00% Castro::computeNewDt() 9 7.76e-06 1.153e-05 2.551e-05 0.00% Castro::check_for_nan() 20 1.869e-05 2.284e-05 2.549e-05 0.00% Castro::retry_advance_ctu() 10 3.764e-06 8.193e-06 2.284e-05 0.00% Castro::FluxRegCrseInit 10 8.909e-06 1.365e-05 1.891e-05 0.00% Gravity::set_mass_offset() 10 7.629e-06 1.204e-05 1.846e-05 0.00% Castro::post_init() 1 8.841e-06 1.135e-05 1.634e-05 0.00% Gravity::swapTimeLevels() 10 5.722e-06 1.21e-05 1.615e-05 0.00% Castro::create_source_corrector() 10 9.105e-06 1.148e-05 1.357e-05 0.00% Amr::initSubcycle() 1 8.077e-06 9.334e-06 1.07e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.946e-06 4.807e-06 6.788e-06 0.00% Amr::InitializeInit() 1 2.111e-06 2.772e-06 6.471e-06 0.00% Castro::post_regrid() 1 2.251e-06 3.21e-06 5.755e-06 0.00% Castro::computeInitialDt() 2 2.895e-06 4.146e-06 4.911e-06 0.00% Amr::init() 1 1.915e-06 2.195e-06 2.882e-06 0.00% Castro::FluxRegFineAdd() 10 1.757e-06 2.195e-06 2.565e-06 0.00% Amr::initialInit() 1 1.041e-06 1.458e-06 2.217e-06 0.00% DistributionMapping::Distribute() 1 9.99e-07 1.074e-06 1.162e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.602 3.604 3.604 100.00% Amr::coarseTimeStep() 10 3.393 3.393 3.393 94.14% Amr::timeStep() 10 3.379 3.381 3.382 93.83% Castro::advance() 10 3.364 3.364 3.365 93.35% Castro::subcycle_advance_ctu() 10 3.29 3.292 3.296 91.45% Castro::do_advance_ctu() 10 3.289 3.292 3.296 91.45% Castro::construct_ctu_hydro_source() 10 2.004 2.349 2.458 68.18% Gravity::make_radial_gravity() 21 0.3394 0.3519 0.3833 10.63% Castro::construct_old_gravity() 10 0.2003 0.211 0.2346 6.51% Gravity::get_new_grav_vector() 11 0.231 0.2326 0.2342 6.50% Gravity::get_old_grav_vector() 10 0.1994 0.2101 0.2341 6.49% FillPatchIterator::Initialize 41 0.1884 0.1963 0.2108 5.85% Castro::construct_new_gravity() 10 0.2042 0.2056 0.2072 5.75% Amr::init() 1 0.1946 0.1946 0.1947 5.40% FillPatchSingleLevel 41 0.1364 0.1504 0.1859 5.16% Castro::initialize_do_advance() 10 0.1588 0.1785 0.1853 5.14% Amr::initialInit() 1 0.1805 0.1807 0.1808 5.02% FabArray::ParallelCopy() 41 0.0939 0.1073 0.151 4.19% Amr::InitializeInit() 1 0.05866 0.1028 0.1505 4.18% Amr::defBaseLevel() 1 0.05865 0.1028 0.1505 4.18% Castro::initData() 1 0.04518 0.08803 0.1353 3.75% Castro::expand_state() 10 0.1239 0.1306 0.135 3.75% FabArray::ParallelCopy_finish() 41 0.04569 0.06341 0.1254 3.48% Castro::estTimeStep() 21 0.03032 0.08267 0.1225 3.40% Amr::FinalizeInit() 1 0.0303 0.0779 0.1218 3.38% Castro::clean_state() 62 0.1092 0.117 0.1209 3.35% Castro::computeInitialDt() 2 0.001738 0.04946 0.09353 2.59% Castro::initialize_advance() 10 0.06715 0.07201 0.07457 2.07% Castro::computeTemp() 63 0.06413 0.06944 0.07205 2.00% FabArray::setVal() 143 0.05946 0.06903 0.07192 2.00% Castro::do_new_sources() 10 0.05011 0.06358 0.06682 1.85% Castro::reset_internal_energy(MultiFab) 63 0.04645 0.0503 0.05227 1.45% Castro::reset_internal_energy(Fab) 1008 0.04616 0.05 0.05197 1.44% FabArray::ParallelCopy_nowait() 41 0.02549 0.04383 0.04939 1.37% Castro::do_old_sources() 10 0.03345 0.0456 0.04908 1.36% StateDataPhysBCFunct::() 41 0.03482 0.043 0.04827 1.34% StateData::FillBoundary(geom) 41 0.03467 0.04283 0.04807 1.33% Castro::normalize_species() 62 0.03892 0.04165 0.04315 1.20% Castro::construct_new_source() 50 0.02248 0.03048 0.03501 0.97% Castro::construct_new_gravity_source() 10 0.01772 0.02401 0.02956 0.82% Gravity::interpolate_monopole_grav() 21 0.0257 0.02731 0.02788 0.77% Castro::post_init() 1 0.02741 0.02763 0.02787 0.77% Amr::writePlotFile() 2 0.02391 0.02405 0.02429 0.67% Castro::post_timestep() 10 0.01467 0.01657 0.01722 0.48% Castro::apply_source_to_state() 20 0.01022 0.01471 0.01623 0.45% MultiFab::Saxpy() 20 0.01018 0.01466 0.01618 0.45% FabArray::setDomainBndry() 41 0.006027 0.01263 0.01576 0.44% VisMF::Write(FabArray) 2 0.01112 0.0117 0.01424 0.40% Castro::computeNewDt() 9 0.007353 0.009809 0.01243 0.34% Castro::construct_old_source() 50 0.004895 0.01023 0.01205 0.33% Castro::construct_old_gravity_source() 10 0.00486 0.01016 0.01196 0.33% Castro::check_for_nan() 20 0.01035 0.01115 0.01194 0.33% MultiFab::contains_nan() 20 0.01033 0.01112 0.01192 0.33% Castro::Castro() 1 0.008834 0.009792 0.01079 0.30% Castro::initMFs() 1 0.005479 0.006056 0.007326 0.20% Castro::enforce_min_density() 62 0.006113 0.006731 0.00713 0.20% AmrLevel::AmrLevel(dm) 1 0.004497 0.004858 0.005464 0.15% StateData::define() 4 0.004478 0.004838 0.005442 0.15% Castro::swap_state_time_levels() 10 0.002915 0.003819 0.004023 0.11% Castro::post_regrid() 1 0.001594 0.001729 0.001975 0.05% Castro::buildMetrics() 1 0.001401 0.001532 0.001764 0.05% Castro::finalize_do_advance() 10 0.0005318 0.001325 0.00162 0.04% Amr::InitAmr() 1 0.0002716 0.0003019 0.0003794 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.382e-05 9.433e-05 0.0001277 0.00% DistributionMapping::LeastUsedCPUs() 1 8.821e-06 8.845e-05 0.0001201 0.00% Castro::finalize_advance() 10 6.15e-05 7.442e-05 9.866e-05 0.00% Castro::enforce_consistent_e() 1 8.1e-05 8.66e-05 9.709e-05 0.00% FabArrayBase::getCPC() 41 7.228e-05 7.89e-05 8.669e-05 0.00% Amr::writeSmallPlotFile() 1 2.952e-05 4.941e-05 6.474e-05 0.00% FabArrayBase::CPC::define() 2 2.14e-05 2.641e-05 3.497e-05 0.00% Castro::enforce_speed_limit() 62 2.041e-05 2.619e-05 3.137e-05 0.00% Castro::retry_advance_ctu() 10 3.764e-06 8.193e-06 2.284e-05 0.00% Castro::FluxRegCrseInit 10 8.909e-06 1.365e-05 1.891e-05 0.00% Gravity::set_mass_offset() 10 7.629e-06 1.204e-05 1.846e-05 0.00% Gravity::swapTimeLevels() 10 5.722e-06 1.21e-05 1.615e-05 0.00% Castro::create_source_corrector() 10 9.105e-06 1.148e-05 1.357e-05 0.00% Amr::initSubcycle() 1 8.077e-06 9.334e-06 1.07e-05 0.00% Castro::FluxRegFineAdd() 10 1.757e-06 2.195e-06 2.565e-06 0.00% DistributionMapping::Distribute() 1 9.99e-07 1.074e-06 1.162e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-23-g0a50776a7239) finalized