MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-25-g0540fed3576f) initialized Starting run at 17:19:57 UTC on 2022-05-20. Successfully read inputs file ... Castro git describe: 22.05-32-g824dd79b5 AMReX git describe: 22.05-25-g0540fed35 Microphysics git describe: 22.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013615216 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.346933587 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.33376788 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335094063 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334878311 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.335380846 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.340587485 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.329701174 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.329907858 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.330150062 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.330815684 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009818727 seconds Ending run at 17:20:01 UTC on 2022-05-20. Run time = 3.543597653 Run time without initialization = 3.363805522 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.541 ... 3.543 ... 3.544 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0377 2.3376 2.4337 68.68% Castro::do_advance_ctu() 10 0.03029 0.1295 0.4329 12.22% Gravity::make_radial_gravity() 21 0.3387 0.3511 0.3799 10.72% Castro::initData() 1 0.04017 0.07956 0.1193 3.37% FabArray::ParallelCopy_finish() 41 0.03266 0.05245 0.1146 3.24% Castro::estTimeStep() 21 0.01828 0.06274 0.1076 3.04% FabArray::setVal() 143 0.05383 0.07046 0.07519 2.12% Castro::reset_internal_energy(Fab) 1008 0.04605 0.04881 0.05198 1.47% FabArray::ParallelCopy_nowait() 41 0.0266 0.04338 0.04903 1.38% StateData::FillBoundary(geom) 41 0.03643 0.04241 0.04722 1.33% Castro::normalize_species() 62 0.03876 0.04141 0.04306 1.22% FillPatchIterator::Initialize 41 0.01942 0.03242 0.03675 1.04% Gravity::interpolate_monopole_grav() 21 0.02632 0.02755 0.02815 0.79% Castro::construct_new_gravity_source() 10 0.0182 0.02299 0.02429 0.69% Castro::expand_state() 10 0.009544 0.02038 0.023 0.65% Castro::initialize_do_advance() 10 0.008358 0.01661 0.01957 0.55% Castro::computeTemp() 63 0.01751 0.01818 0.01949 0.55% MultiFab::Saxpy() 20 0.01064 0.01479 0.01644 0.46% FabArray::setDomainBndry() 41 0.004981 0.01257 0.01591 0.45% VisMF::Write(FabArray) 2 0.01095 0.01166 0.01405 0.40% MultiFab::contains_nan() 20 0.01061 0.01162 0.01299 0.37% Amr::writePlotFile() 2 0.009583 0.01212 0.01276 0.36% Gravity::get_new_grav_vector() 11 0.008833 0.01148 0.01248 0.35% Castro::construct_old_gravity_source() 10 0.004837 0.01025 0.01192 0.34% Castro::initialize_advance() 10 0.01107 0.01135 0.01192 0.34% Gravity::get_old_grav_vector() 10 0.005409 0.009678 0.01099 0.31% Castro::construct_new_source() 50 0.005034 0.006591 0.007179 0.20% Castro::enforce_min_density() 62 0.005944 0.006655 0.007068 0.20% Castro::initMFs() 1 0.005546 0.005914 0.006572 0.19% main() 1 0.003345 0.005207 0.005999 0.17% StateData::define() 4 0.004508 0.004764 0.005055 0.14% Castro::swap_state_time_levels() 10 0.003073 0.003965 0.004156 0.12% Amr::coarseTimeStep() 10 0.001039 0.001702 0.003243 0.09% Castro::buildMetrics() 1 0.001271 0.001349 0.001486 0.04% Castro::finalize_do_advance() 10 0.0005399 0.001203 0.001398 0.04% Amr::timeStep() 10 0.0001653 0.0002299 0.0005214 0.01% Amr::InitAmr() 1 0.0002634 0.0003081 0.0003974 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002917 0.0003095 0.00032 0.01% Castro::clean_state() 62 0.0001242 0.0001641 0.0001771 0.00% StateDataPhysBCFunct::() 41 0.0001083 0.0001475 0.0001646 0.00% DistributionMapping::LeastUsedCPUs() 1 7.478e-06 9.339e-05 0.0001238 0.00% Castro::enforce_consistent_e() 1 7.494e-05 8.383e-05 9.393e-05 0.00% Castro::construct_old_source() 50 2.999e-05 7.409e-05 9.378e-05 0.00% Castro::Castro() 1 5.372e-05 7.223e-05 9.246e-05 0.00% FabArray::ParallelCopy() 41 5.275e-05 7.188e-05 8.312e-05 0.00% FillPatchSingleLevel 41 5.216e-05 6.864e-05 7.796e-05 0.00% Castro::subcycle_advance_ctu() 10 4.789e-05 6.471e-05 7.723e-05 0.00% Castro::do_new_sources() 10 3.694e-05 6.305e-05 7.621e-05 0.00% Castro::do_old_sources() 10 3.232e-05 6.44e-05 7.472e-05 0.00% Amr::writeSmallPlotFile() 1 5.339e-05 6.318e-05 6.995e-05 0.00% Amr::FinalizeInit() 1 4.035e-06 1.283e-05 6.858e-05 0.00% Castro::advance() 10 3.249e-05 4.663e-05 6.636e-05 0.00% Castro::construct_old_gravity() 10 3.382e-05 5.007e-05 6.238e-05 0.00% FabArrayBase::getCPC() 41 4.708e-05 5.207e-05 6.04e-05 0.00% Castro::finalize_advance() 10 4.566e-05 5.152e-05 5.543e-05 0.00% Castro::apply_source_to_state() 20 3.742e-05 4.712e-05 5.438e-05 0.00% Castro::construct_new_gravity() 10 3.516e-05 4.387e-05 4.785e-05 0.00% Amr::defBaseLevel() 1 2.542e-05 2.984e-05 3.651e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.755e-05 2.623e-05 3.469e-05 0.00% FabArrayBase::CPC::define() 2 2.441e-05 2.728e-05 3.344e-05 0.00% Castro::enforce_speed_limit() 62 2.356e-05 2.816e-05 3.106e-05 0.00% Castro::check_for_nan() 20 1.905e-05 2.377e-05 2.826e-05 0.00% Castro::post_timestep() 10 1.153e-05 1.819e-05 2.183e-05 0.00% Gravity::swapTimeLevels() 10 6.848e-06 1.385e-05 2.163e-05 0.00% Castro::post_init() 1 8.201e-06 1.11e-05 1.726e-05 0.00% Castro::create_source_corrector() 10 7.155e-06 1.024e-05 1.385e-05 0.00% Gravity::set_mass_offset() 10 7.707e-06 1.064e-05 1.33e-05 0.00% Castro::computeNewDt() 9 6.583e-06 9.3e-06 1.153e-05 0.00% Castro::FluxRegCrseInit 10 6.971e-06 9.327e-06 1.074e-05 0.00% Amr::initSubcycle() 1 7.998e-06 8.941e-06 9.91e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.021e-06 5.073e-06 6.471e-06 0.00% Castro::retry_advance_ctu() 10 3.615e-06 5.344e-06 6.164e-06 0.00% Amr::InitializeInit() 1 1.923e-06 2.645e-06 5.366e-06 0.00% Castro::computeInitialDt() 2 3.515e-06 4.088e-06 4.786e-06 0.00% Castro::post_regrid() 1 1.952e-06 3.381e-06 4.542e-06 0.00% Castro::FluxRegFineAdd() 10 1.856e-06 2.224e-06 2.897e-06 0.00% Amr::init() 1 1.782e-06 2.276e-06 2.632e-06 0.00% Amr::initialInit() 1 1.301e-06 1.614e-06 2.035e-06 0.00% DistributionMapping::Distribute() 1 9.76e-07 1.21e-06 1.382e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.541 3.543 3.544 100.00% Amr::coarseTimeStep() 10 3.348 3.348 3.348 94.48% Amr::timeStep() 10 3.337 3.338 3.339 94.23% Castro::advance() 10 3.322 3.322 3.323 93.76% Castro::subcycle_advance_ctu() 10 3.245 3.25 3.259 91.96% Castro::do_advance_ctu() 10 3.245 3.249 3.259 91.95% Castro::construct_ctu_hydro_source() 10 2.038 2.338 2.434 68.68% Gravity::make_radial_gravity() 21 0.3387 0.3511 0.3799 10.72% Castro::construct_old_gravity() 10 0.2044 0.214 0.2361 6.66% Gravity::get_old_grav_vector() 10 0.2035 0.2132 0.2356 6.65% Gravity::get_new_grav_vector() 11 0.2259 0.2276 0.2287 6.45% Castro::construct_new_gravity() 10 0.2023 0.2037 0.2047 5.78% FillPatchIterator::Initialize 41 0.1766 0.1836 0.2026 5.72% Amr::init() 1 0.1792 0.1793 0.1794 5.06% FillPatchSingleLevel 41 0.1243 0.1386 0.1782 5.03% Castro::initialize_do_advance() 10 0.1522 0.1672 0.1715 4.84% Amr::initialInit() 1 0.1652 0.1654 0.1655 4.67% FabArray::ParallelCopy() 41 0.08014 0.09598 0.1414 3.99% Amr::InitializeInit() 1 0.05818 0.0983 0.1385 3.91% Amr::defBaseLevel() 1 0.05817 0.09829 0.1385 3.91% Castro::expand_state() 10 0.1174 0.1206 0.1234 3.48% Castro::initData() 1 0.04426 0.08353 0.1228 3.47% Castro::clean_state() 62 0.1078 0.1146 0.1209 3.41% FabArray::ParallelCopy_finish() 41 0.03266 0.05245 0.1146 3.24% Castro::estTimeStep() 21 0.01828 0.06274 0.1076 3.04% Amr::FinalizeInit() 1 0.02687 0.06713 0.1073 3.03% Castro::computeInitialDt() 2 0.001595 0.04183 0.08186 2.31% Castro::initialize_advance() 10 0.06358 0.07275 0.07696 2.17% FabArray::setVal() 143 0.05383 0.07046 0.07519 2.12% Castro::computeTemp() 63 0.06408 0.0673 0.07179 2.03% Castro::do_new_sources() 10 0.0518 0.06273 0.06582 1.86% Castro::reset_internal_energy(MultiFab) 63 0.04634 0.04912 0.0523 1.48% Castro::reset_internal_energy(Fab) 1008 0.04605 0.04881 0.05198 1.47% Castro::do_old_sources() 10 0.03355 0.04591 0.04929 1.39% FabArray::ParallelCopy_nowait() 41 0.02667 0.04346 0.04912 1.39% StateDataPhysBCFunct::() 41 0.03654 0.04255 0.04739 1.34% StateData::FillBoundary(geom) 41 0.03643 0.04241 0.04722 1.33% Castro::normalize_species() 62 0.03876 0.04141 0.04306 1.22% Castro::construct_new_source() 50 0.02324 0.02958 0.03134 0.88% Gravity::interpolate_monopole_grav() 21 0.02632 0.02755 0.02815 0.79% Castro::post_init() 1 0.02444 0.02463 0.02477 0.70% Castro::construct_new_gravity_source() 10 0.0182 0.02299 0.02429 0.69% Amr::writePlotFile() 2 0.02363 0.02379 0.02404 0.68% Castro::apply_source_to_state() 20 0.01068 0.01484 0.0165 0.47% Castro::post_timestep() 10 0.0149 0.01573 0.01645 0.46% MultiFab::Saxpy() 20 0.01064 0.01479 0.01644 0.46% FabArray::setDomainBndry() 41 0.004981 0.01257 0.01591 0.45% VisMF::Write(FabArray) 2 0.01095 0.01166 0.01405 0.40% Castro::check_for_nan() 20 0.01064 0.01164 0.01301 0.37% MultiFab::contains_nan() 20 0.01061 0.01162 0.01299 0.37% Castro::construct_old_source() 50 0.004867 0.01033 0.01201 0.34% Castro::construct_old_gravity_source() 10 0.004837 0.01025 0.01192 0.34% Castro::Castro() 1 0.009235 0.009843 0.01062 0.30% Castro::computeNewDt() 9 0.007071 0.007076 0.00708 0.20% Castro::enforce_min_density() 62 0.005944 0.006655 0.007068 0.20% Castro::initMFs() 1 0.005546 0.005914 0.006572 0.19% AmrLevel::AmrLevel(dm) 1 0.004537 0.00479 0.005078 0.14% StateData::define() 4 0.004508 0.004764 0.005055 0.14% Castro::swap_state_time_levels() 10 0.003073 0.003965 0.004156 0.12% Castro::buildMetrics() 1 0.001392 0.001484 0.001651 0.05% Castro::post_regrid() 1 0.001527 0.001572 0.001631 0.05% Castro::finalize_do_advance() 10 0.0005399 0.001203 0.001398 0.04% Amr::InitAmr() 1 0.0002713 0.000317 0.0004055 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.247e-05 9.967e-05 0.0001314 0.00% DistributionMapping::LeastUsedCPUs() 1 7.478e-06 9.339e-05 0.0001238 0.00% Castro::enforce_consistent_e() 1 7.494e-05 8.383e-05 9.393e-05 0.00% FabArrayBase::getCPC() 41 7.384e-05 7.936e-05 8.722e-05 0.00% Amr::writeSmallPlotFile() 1 5.339e-05 6.318e-05 6.995e-05 0.00% Castro::finalize_advance() 10 5.595e-05 6.307e-05 6.718e-05 0.00% FabArrayBase::CPC::define() 2 2.441e-05 2.728e-05 3.344e-05 0.00% Castro::enforce_speed_limit() 62 2.356e-05 2.816e-05 3.106e-05 0.00% Gravity::swapTimeLevels() 10 6.848e-06 1.385e-05 2.163e-05 0.00% Castro::create_source_corrector() 10 7.155e-06 1.024e-05 1.385e-05 0.00% Gravity::set_mass_offset() 10 7.707e-06 1.064e-05 1.33e-05 0.00% Castro::FluxRegCrseInit 10 6.971e-06 9.327e-06 1.074e-05 0.00% Amr::initSubcycle() 1 7.998e-06 8.941e-06 9.91e-06 0.00% Castro::retry_advance_ctu() 10 3.615e-06 5.344e-06 6.164e-06 0.00% Castro::FluxRegFineAdd() 10 1.856e-06 2.224e-06 2.897e-06 0.00% DistributionMapping::Distribute() 1 9.76e-07 1.21e-06 1.382e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-25-g0540fed3576f) finalized