MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (22.05-25-g0540fed3576f) initialized Starting run at 05:38:06 UTC on 2022-05-23. Successfully read inputs file ... Castro git describe: 22.05-29-gf507f242f AMReX git describe: 22.05-25-g0540fed35 Microphysics git describe: 22.05-1-g39742967 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013299938 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.345174658 [STEP 1] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336356053 [STEP 2] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336251557 [STEP 3] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336087888 [STEP 4] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.336497146 [STEP 5] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342738082 [STEP 6] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.332519228 [STEP 7] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.342680387 [STEP 8] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.337346782 [STEP 9] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.332978287 [STEP 10] FAB kilobyte spread across MPI nodes: [58394 ... 58394] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009813628 seconds Ending run at 05:38:09 UTC on 2022-05-23. Run time = 3.578336737 Run time without initialization = 3.394430071 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.576 ... 3.578 ... 3.578 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0358 2.3495 2.4670 68.94% Castro::do_advance_ctu() 10 0.02931 0.1485 0.4651 13.00% Gravity::make_radial_gravity() 21 0.3424 0.3522 0.3797 10.61% Castro::initData() 1 0.04023 0.08049 0.1203 3.36% FabArray::ParallelCopy_finish() 41 0.03658 0.05533 0.1148 3.21% Castro::estTimeStep() 21 0.02028 0.06393 0.105 2.93% FabArray::setVal() 143 0.05344 0.06985 0.07498 2.10% Castro::reset_internal_energy(Fab) 1008 0.04481 0.04943 0.05146 1.44% FabArray::ParallelCopy_nowait() 41 0.02695 0.04307 0.04878 1.36% StateData::FillBoundary(geom) 41 0.03676 0.04171 0.0453 1.27% Castro::normalize_species() 62 0.0398 0.04174 0.04398 1.23% FillPatchIterator::Initialize 41 0.01998 0.03226 0.03672 1.03% Gravity::interpolate_monopole_grav() 21 0.02583 0.02737 0.02793 0.78% Castro::construct_new_gravity_source() 10 0.01781 0.02295 0.02488 0.70% Castro::expand_state() 10 0.009626 0.01936 0.02297 0.64% Castro::computeTemp() 63 0.01632 0.01879 0.02 0.56% Castro::initialize_do_advance() 10 0.008942 0.01661 0.01921 0.54% MultiFab::Saxpy() 20 0.01281 0.01529 0.01634 0.46% FabArray::setDomainBndry() 41 0.005026 0.01235 0.01533 0.43% VisMF::Write(FabArray) 2 0.01066 0.01148 0.0138 0.39% Gravity::get_new_grav_vector() 11 0.008578 0.01145 0.0127 0.35% Amr::writePlotFile() 2 0.009558 0.012 0.0127 0.35% MultiFab::contains_nan() 20 0.01057 0.01122 0.01223 0.34% Castro::construct_old_gravity_source() 10 0.004802 0.01048 0.01202 0.34% Castro::initialize_advance() 10 0.011 0.01119 0.01144 0.32% Gravity::get_old_grav_vector() 10 0.005353 0.009762 0.0111 0.31% Castro::construct_new_source() 50 0.004895 0.006553 0.007128 0.20% Castro::enforce_min_density() 62 0.005926 0.006691 0.007036 0.20% Castro::initMFs() 1 0.005439 0.005881 0.006206 0.17% Castro::swap_state_time_levels() 10 0.002996 0.004022 0.005451 0.15% main() 1 0.00339 0.004693 0.005289 0.15% StateData::define() 4 0.004592 0.004934 0.005265 0.15% Amr::coarseTimeStep() 10 0.0009228 0.00173 0.003713 0.10% Castro::buildMetrics() 1 0.001301 0.001419 0.001509 0.04% Castro::finalize_do_advance() 10 0.000467 0.001101 0.001366 0.04% Amr::timeStep() 10 0.0001771 0.0002483 0.0005436 0.02% Amr::InitAmr() 1 0.0002722 0.0003072 0.0004372 0.01% Amr::writeSmallPlotFile() 1 3.122e-05 0.0001014 0.0004183 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002829 0.0003065 0.0003278 0.01% Castro::clean_state() 62 0.0001387 0.0001633 0.000189 0.01% DistributionMapping::LeastUsedCPUs() 1 8.027e-06 0.0001445 0.0001742 0.00% StateDataPhysBCFunct::() 41 0.0001241 0.0001398 0.0001588 0.00% Castro::enforce_consistent_e() 1 8.296e-05 8.824e-05 9.444e-05 0.00% Castro::construct_old_source() 50 3.527e-05 7.31e-05 9.058e-05 0.00% Castro::do_new_sources() 10 4.221e-05 6.814e-05 8.946e-05 0.00% Amr::FinalizeInit() 1 4.033e-06 1.472e-05 8.575e-05 0.00% Castro::Castro() 1 4.89e-05 6.349e-05 8.566e-05 0.00% FillPatchSingleLevel 41 5.789e-05 7.169e-05 8.519e-05 0.00% FabArray::ParallelCopy() 41 5.933e-05 7.367e-05 8.346e-05 0.00% Castro::do_old_sources() 10 3.986e-05 6.557e-05 8.286e-05 0.00% Castro::subcycle_advance_ctu() 10 5.038e-05 6.089e-05 7.763e-05 0.00% Castro::construct_old_gravity() 10 3.498e-05 5.51e-05 6.984e-05 0.00% Castro::advance() 10 2.935e-05 4.3e-05 6.217e-05 0.00% FabArrayBase::getCPC() 41 4.682e-05 5.156e-05 5.864e-05 0.00% Castro::apply_source_to_state() 20 3.468e-05 4.767e-05 5.624e-05 0.00% Castro::check_for_nan() 20 2.115e-05 2.96e-05 5.593e-05 0.00% Castro::finalize_advance() 10 4.864e-05 5.184e-05 5.53e-05 0.00% Castro::construct_new_gravity() 10 4.152e-05 4.457e-05 4.913e-05 0.00% FabArrayBase::CPC::define() 2 2.338e-05 2.714e-05 3.703e-05 0.00% Amr::defBaseLevel() 1 2.396e-05 2.838e-05 3.599e-05 0.00% Castro::enforce_speed_limit() 62 2.817e-05 3.058e-05 3.317e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.255e-05 1.75e-05 2.921e-05 0.00% Castro::post_timestep() 10 1.201e-05 1.853e-05 2.414e-05 0.00% Castro::create_source_corrector() 10 7.772e-06 1.302e-05 2.047e-05 0.00% Gravity::swapTimeLevels() 10 9.405e-06 1.322e-05 1.774e-05 0.00% Castro::post_init() 1 8.925e-06 1.062e-05 1.414e-05 0.00% Castro::computeNewDt() 9 7.559e-06 1.023e-05 1.323e-05 0.00% Gravity::set_mass_offset() 10 7.184e-06 1.039e-05 1.26e-05 0.00% Castro::FluxRegCrseInit 10 6.498e-06 9.018e-06 1.153e-05 0.00% Amr::initSubcycle() 1 8.98e-06 9.309e-06 9.766e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.042e-06 4.471e-06 6.361e-06 0.00% Castro::retry_advance_ctu() 10 4.431e-06 5.512e-06 6.331e-06 0.00% Amr::InitializeInit() 1 2.129e-06 3.257e-06 6.147e-06 0.00% Castro::computeInitialDt() 2 2.974e-06 3.935e-06 4.79e-06 0.00% Castro::post_regrid() 1 1.667e-06 3.109e-06 4.006e-06 0.00% Castro::FluxRegFineAdd() 10 1.501e-06 2.251e-06 3.171e-06 0.00% Amr::init() 1 1.691e-06 2.24e-06 3.084e-06 0.00% Amr::initialInit() 1 1.27e-06 1.784e-06 2.272e-06 0.00% DistributionMapping::Distribute() 1 9.98e-07 1.203e-06 1.616e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.576 3.578 3.578 100.00% Amr::coarseTimeStep() 10 3.379 3.379 3.379 94.44% Amr::timeStep() 10 3.368 3.37 3.37 94.19% Castro::advance() 10 3.353 3.354 3.354 93.73% Castro::subcycle_advance_ctu() 10 3.277 3.281 3.292 92.00% Castro::do_advance_ctu() 10 3.277 3.281 3.292 92.00% Castro::construct_ctu_hydro_source() 10 2.036 2.349 2.467 68.94% Gravity::make_radial_gravity() 21 0.3424 0.3522 0.3797 10.61% Castro::construct_old_gravity() 10 0.2051 0.2125 0.2334 6.52% Gravity::get_old_grav_vector() 10 0.2042 0.2117 0.2328 6.51% Gravity::get_new_grav_vector() 11 0.2284 0.23 0.2314 6.47% Castro::construct_new_gravity() 10 0.202 0.2033 0.2044 5.71% FillPatchIterator::Initialize 41 0.1787 0.1851 0.2039 5.70% Amr::init() 1 0.1833 0.1834 0.1835 5.13% FillPatchSingleLevel 41 0.1268 0.1405 0.1789 5.00% Amr::initialInit() 1 0.1697 0.1699 0.17 4.75% Castro::initialize_do_advance() 10 0.1531 0.1659 0.1698 4.75% FabArray::ParallelCopy() 41 0.08351 0.09856 0.1419 3.97% Amr::InitializeInit() 1 0.05962 0.09953 0.1399 3.91% Amr::defBaseLevel() 1 0.05961 0.09953 0.1399 3.91% Castro::initData() 1 0.04409 0.08462 0.1242 3.47% Castro::clean_state() 62 0.1065 0.1162 0.1212 3.39% Castro::expand_state() 10 0.1161 0.1188 0.1207 3.37% FabArray::ParallelCopy_finish() 41 0.03658 0.05533 0.1148 3.21% Amr::FinalizeInit() 1 0.02988 0.07032 0.1102 3.08% Castro::estTimeStep() 21 0.02028 0.06393 0.105 2.93% Castro::computeInitialDt() 2 0.001724 0.04208 0.08186 2.29% Castro::initialize_advance() 10 0.06113 0.07223 0.07632 2.13% FabArray::setVal() 143 0.05344 0.06985 0.07498 2.10% Castro::computeTemp() 63 0.06142 0.06853 0.07178 2.01% Castro::do_new_sources() 10 0.05201 0.06309 0.06641 1.86% Castro::reset_internal_energy(MultiFab) 63 0.04509 0.04974 0.05178 1.45% Castro::reset_internal_energy(Fab) 1008 0.04481 0.04943 0.05146 1.44% Castro::do_old_sources() 10 0.03697 0.04702 0.04975 1.39% FabArray::ParallelCopy_nowait() 41 0.02703 0.04315 0.04886 1.37% StateDataPhysBCFunct::() 41 0.03688 0.04185 0.04545 1.27% StateData::FillBoundary(geom) 41 0.03676 0.04171 0.0453 1.27% Castro::normalize_species() 62 0.0398 0.04174 0.04398 1.23% Castro::construct_new_source() 50 0.02271 0.02951 0.03192 0.89% Gravity::interpolate_monopole_grav() 21 0.02583 0.02737 0.02793 0.78% Castro::post_init() 1 0.02718 0.02753 0.02769 0.77% Castro::construct_new_gravity_source() 10 0.01781 0.02295 0.02488 0.70% Amr::writePlotFile() 2 0.02335 0.02348 0.02362 0.66% Castro::apply_source_to_state() 20 0.01285 0.01534 0.01639 0.46% Castro::post_timestep() 10 0.01393 0.01568 0.01635 0.46% MultiFab::Saxpy() 20 0.01281 0.01529 0.01634 0.46% FabArray::setDomainBndry() 41 0.005026 0.01235 0.01533 0.43% VisMF::Write(FabArray) 2 0.01066 0.01148 0.0138 0.39% Castro::check_for_nan() 20 0.0106 0.01125 0.01228 0.34% MultiFab::contains_nan() 20 0.01057 0.01122 0.01223 0.34% Castro::construct_old_source() 50 0.004837 0.01055 0.01211 0.34% Castro::construct_old_gravity_source() 10 0.004802 0.01048 0.01202 0.34% Castro::Castro() 1 0.008778 0.009778 0.01037 0.29% Castro::computeNewDt() 9 0.007127 0.007134 0.007139 0.20% Castro::enforce_min_density() 62 0.005926 0.006691 0.007036 0.20% Castro::initMFs() 1 0.005439 0.005881 0.006206 0.17% Castro::swap_state_time_levels() 10 0.002996 0.004022 0.005451 0.15% AmrLevel::AmrLevel(dm) 1 0.004607 0.004952 0.005283 0.15% StateData::define() 4 0.004592 0.004934 0.005265 0.15% Castro::post_regrid() 1 0.001518 0.001639 0.001942 0.05% Castro::buildMetrics() 1 0.001419 0.001557 0.001653 0.05% Castro::finalize_do_advance() 10 0.000467 0.001101 0.001366 0.04% Amr::InitAmr() 1 0.0002812 0.0003166 0.0004467 0.01% Amr::writeSmallPlotFile() 1 3.122e-05 0.0001014 0.0004183 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.39e-05 0.0001502 0.0001811 0.01% DistributionMapping::LeastUsedCPUs() 1 8.027e-06 0.0001445 0.0001742 0.00% Castro::enforce_consistent_e() 1 8.296e-05 8.824e-05 9.444e-05 0.00% FabArrayBase::getCPC() 41 7.291e-05 7.87e-05 9.119e-05 0.00% Castro::finalize_advance() 10 5.947e-05 6.31e-05 6.761e-05 0.00% FabArrayBase::CPC::define() 2 2.338e-05 2.714e-05 3.703e-05 0.00% Castro::enforce_speed_limit() 62 2.817e-05 3.058e-05 3.317e-05 0.00% Castro::create_source_corrector() 10 7.772e-06 1.302e-05 2.047e-05 0.00% Gravity::swapTimeLevels() 10 9.405e-06 1.322e-05 1.774e-05 0.00% Gravity::set_mass_offset() 10 7.184e-06 1.039e-05 1.26e-05 0.00% Castro::FluxRegCrseInit 10 6.498e-06 9.018e-06 1.153e-05 0.00% Amr::initSubcycle() 1 8.98e-06 9.309e-06 9.766e-06 0.00% Castro::retry_advance_ctu() 10 4.431e-06 5.512e-06 6.331e-06 0.00% Castro::FluxRegFineAdd() 10 1.501e-06 2.251e-06 3.171e-06 0.00% DistributionMapping::Distribute() 1 9.98e-07 1.203e-06 1.616e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] AMReX (22.05-25-g0540fed3576f) finalized